Wall clock time and date at job start Wed Apr 1 2020 02:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47202 * 2 1 4 4 C 1.38350 * 120.34489 * 90.00885 * 3 2 1 5 5 N 1.31930 * 121.07896 * 180.02562 * 4 3 2 6 6 C 1.31696 * 121.87720 * 359.97438 * 5 4 3 7 7 C 1.39515 * 120.56916 * 0.02562 * 6 5 4 8 8 C 1.47839 * 120.56149 * 180.02562 * 7 6 5 9 9 O 1.21556 * 119.99720 * 8.23657 * 8 7 6 10 10 N 1.34770 * 120.00019 * 188.24624 * 8 7 6 11 11 C 1.47080 * 125.63127 * 354.72122 * 10 8 7 12 12 C 1.54455 * 107.29933 * 179.05021 * 11 10 8 13 13 C 1.54391 * 102.87222 * 338.49912 * 12 11 10 14 14 C 1.47580 * 125.62650 * 174.76797 * 10 8 7 15 15 C 1.52099 * 110.51609 * 276.65460 * 13 12 11 16 16 C 1.53331 * 109.45249 * 295.88964 * 15 13 12 17 17 N 1.46935 * 108.69345 * 306.70900 * 16 15 13 18 18 C 1.36931 * 120.55398 * 234.32251 * 17 16 15 19 19 H 1.08005 * 119.99471 * 152.71035 * 18 17 16 20 20 C 1.38807 * 120.00499 * 332.70762 * 18 17 16 21 21 N 1.31620 * 119.99798 * 338.67898 * 20 18 17 22 22 Si 1.86808 * 120.00227 * 158.68010 * 20 18 17 23 23 H 1.48495 * 109.46913 * 94.61636 * 22 20 18 24 24 H 1.48497 * 109.46966 * 214.61475 * 22 20 18 25 25 H 1.48502 * 109.46897 * 334.61582 * 22 20 18 26 26 C 1.46938 * 118.88529 * 54.34755 * 17 16 15 27 27 C 1.52113 * 110.50533 * 152.62717 * 13 12 11 28 28 C 1.38358 * 120.34913 * 270.30563 * 3 2 1 29 29 H 1.08996 * 109.47836 * 59.99509 * 1 2 3 30 30 H 1.09005 * 109.47234 * 180.02562 * 1 2 3 31 31 H 1.09011 * 109.46739 * 299.99493 * 1 2 3 32 32 H 1.09011 * 109.46739 * 240.00507 * 2 1 3 33 33 H 1.08996 * 109.47836 * 120.00491 * 2 1 3 34 34 H 1.08000 * 119.46359 * 359.97438 * 4 3 2 35 35 H 1.08007 * 119.71142 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.87896 * 59.62453 * 11 10 8 37 37 H 1.08996 * 109.87967 * 298.47485 * 11 10 8 38 38 H 1.09005 * 110.73284 * 220.15584 * 12 11 10 39 39 H 1.08994 * 110.73587 * 96.84626 * 12 11 10 40 40 H 1.09006 * 110.37522 * 84.45710 * 14 10 8 41 41 H 1.09000 * 110.37410 * 322.10460 * 14 10 8 42 42 H 1.09007 * 109.47523 * 55.88575 * 15 13 12 43 43 H 1.09005 * 109.47835 * 175.89282 * 15 13 12 44 44 H 1.09004 * 109.60413 * 186.94599 * 16 15 13 45 45 H 1.09004 * 109.60190 * 66.47484 * 16 15 13 46 46 H 0.97001 * 119.99512 * 179.97438 * 21 20 18 47 47 H 1.09005 * 109.59832 * 185.88191 * 26 17 16 48 48 H 1.08997 * 109.73643 * 65.48070 * 26 17 16 49 49 H 1.09001 * 109.47345 * 184.09726 * 27 13 12 50 50 H 1.09001 * 109.47458 * 304.10123 * 27 13 12 51 51 H 1.08000 * 120.85885 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2655 2.0797 1.1940 5 7 2.7048 3.3236 1.2109 6 6 2.9412 3.9929 0.1015 7 6 2.7311 3.3995 -1.1436 8 6 2.9971 4.1507 -2.3888 9 8 3.5415 5.2364 -2.3390 10 7 2.6359 3.6319 -3.5790 11 6 2.0729 2.2901 -3.7934 12 6 1.7929 2.1458 -5.3055 13 6 1.7047 3.6122 -5.7804 14 6 2.7409 4.3159 -4.8824 15 6 0.3116 4.1700 -5.5326 16 6 -0.7057 3.3994 -6.3826 17 7 -0.2612 3.4204 -7.7830 18 6 -1.0950 3.8710 -8.7712 19 1 -0.6819 4.2987 -9.6729 20 6 -2.4710 3.7782 -8.6144 21 7 -2.9793 2.9143 -7.7614 22 14 -3.6015 4.8794 -9.6140 23 1 -4.0403 4.1592 -10.8362 24 1 -4.7891 5.2399 -8.7986 25 1 -2.8736 6.1144 -10.0016 26 6 1.0928 2.9490 -8.1050 27 6 2.0996 3.7225 -7.2453 28 6 2.2594 2.0820 -1.1940 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.0842 1.5678 2.1275 35 1 3.3008 5.0099 0.1562 36 1 1.1442 2.1839 -3.2327 37 1 2.7890 1.5325 -3.4752 38 1 0.8489 1.6278 -5.4754 39 1 2.6133 1.6280 -5.8022 40 1 3.7431 4.1966 -5.2941 41 1 2.4962 5.3729 -4.7771 42 1 0.0594 4.0622 -4.4776 43 1 0.2885 5.2250 -5.8058 44 1 -1.6836 3.8741 -6.3023 45 1 -0.7674 2.3685 -6.0339 46 1 -3.9409 2.8497 -7.6516 47 1 1.3004 3.1267 -9.1603 48 1 1.1721 1.8832 -7.8912 49 1 2.1019 4.7711 -7.5430 50 1 3.0957 3.3027 -7.3857 51 1 2.0808 1.5934 -2.1404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040775005.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:08 Heat of formation + Delta-G solvation = 35.193417 kcal Electronic energy + Delta-G solvation = -30961.168391 eV Core-core repulsion = 27054.303764 eV Total energy + Delta-G solvation = -3906.864627 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.17253 -39.96486 -38.38576 -36.09860 -35.00755 -33.56532 -32.35134 -30.84772 -30.05543 -30.02594 -29.70756 -27.22918 -25.15661 -24.68193 -23.98700 -22.85718 -22.33520 -22.11858 -20.84168 -19.70008 -18.29164 -17.50385 -17.02679 -16.85411 -16.29612 -15.98199 -15.63607 -14.95312 -14.73043 -14.53539 -14.18006 -14.08927 -13.95687 -13.88704 -13.50093 -13.40824 -13.13961 -13.03342 -12.92302 -12.66167 -12.46743 -12.38652 -12.16527 -11.83081 -11.50859 -11.38131 -11.31069 -11.11106 -10.81949 -10.71855 -10.52900 -10.31056 -10.28221 -10.16384 -10.05452 -9.89663 -9.61933 -9.58884 -9.48286 -9.26610 -8.67769 -8.47978 -6.72790 -5.85048 -3.23374 0.43676 0.92295 2.70094 2.84480 3.34637 3.43024 3.45955 3.60371 4.02350 4.30499 4.33921 4.46947 4.48675 4.57710 4.63811 4.71232 4.84683 4.94616 5.00366 5.07701 5.18593 5.19501 5.26244 5.31220 5.37314 5.44594 5.53831 5.57995 5.60546 5.69624 5.74241 5.82813 5.84574 5.90507 5.93500 5.99884 6.01659 6.10726 6.19953 6.26053 6.35113 6.43219 6.55843 6.62280 6.65761 6.78228 6.90758 7.27081 7.38725 7.55040 7.63293 7.76986 8.01617 8.39447 9.16133 9.80791 10.36758 11.23639 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014155 B = 0.002875 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.559816 B = 9737.184929 C =10592.869870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 C -0.142 4.142 4 C 0.118 3.882 5 N -0.486 5.486 6 C 0.151 3.849 7 C -0.176 4.176 8 C 0.576 3.424 9 O -0.538 6.538 10 N -0.605 5.605 11 C 0.090 3.910 12 C -0.126 4.126 13 C -0.055 4.055 14 C 0.115 3.885 15 C -0.126 4.126 16 C 0.174 3.826 17 N -0.590 5.590 18 C -0.254 4.254 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.899 5.899 22 Si 0.896 3.104 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.148 3.852 27 C -0.118 4.118 28 C -0.076 4.076 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.020 0.980 46 H 0.253 0.747 47 H 0.054 0.946 48 H 0.019 0.981 49 H 0.062 0.938 50 H 0.053 0.947 51 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.780 -6.883 14.438 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.144 4.144 4 C -0.039 4.039 5 N -0.194 5.194 6 C -0.007 4.007 7 C -0.181 4.181 8 C 0.365 3.635 9 O -0.416 6.416 10 N -0.338 5.338 11 C -0.032 4.032 12 C -0.164 4.164 13 C -0.056 4.056 14 C -0.007 4.007 15 C -0.165 4.165 16 C 0.048 3.952 17 N -0.313 5.313 18 C -0.384 4.384 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.543 5.543 22 Si 0.726 3.274 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.021 3.979 27 C -0.158 4.158 28 C -0.101 4.101 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.175 0.825 35 H 0.185 0.815 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.038 0.962 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.037 0.963 49 H 0.081 0.919 50 H 0.072 0.928 51 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 11.053 -5.890 15.365 19.823 hybrid contribution -0.838 0.102 -1.181 1.452 sum 10.215 -5.788 14.184 18.413 Atomic orbital electron populations 1.21789 0.94118 1.02290 1.02583 1.20498 0.96578 0.91243 1.03458 1.20957 1.01279 0.98278 0.93840 1.22921 0.92823 0.90411 0.97714 1.67816 1.12280 1.08462 1.30791 1.22981 0.91929 0.99791 0.85996 1.20952 1.05826 0.95980 0.95354 1.17696 0.78678 0.85135 0.82022 1.90781 1.42892 1.21436 1.86529 1.48401 1.62167 1.16559 1.06632 1.22616 0.97902 0.83939 0.98772 1.22802 1.03617 0.97852 0.92119 1.21011 0.95585 0.93897 0.95095 1.22437 0.99248 0.97679 0.81358 1.22013 0.94381 1.00793 0.99310 1.20772 0.95903 0.96112 0.82400 1.44047 1.10666 1.73751 1.02821 1.19151 0.87160 1.32830 0.99247 0.91738 1.24962 0.97327 0.98033 0.99142 1.70074 1.11249 1.33718 1.39254 0.86379 0.80536 0.81006 0.79475 1.21488 1.21555 1.20411 1.20894 0.85756 0.94640 0.96578 1.21853 0.98642 1.01818 0.93461 1.23117 0.92707 0.93512 1.00807 0.92157 0.91866 0.92490 0.90494 0.90496 0.82550 0.81537 0.90504 0.90948 0.88560 0.90641 0.91478 0.90364 0.93411 0.92361 0.89853 0.96223 0.93699 0.92765 0.96322 0.91923 0.92787 0.81284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.62 16 2 C -0.08 -0.50 6.08 -27.88 -0.17 -0.67 16 3 C -0.14 -1.25 5.15 -104.54 -0.54 -1.78 16 4 C 0.12 1.12 10.85 -17.47 -0.19 0.93 16 5 N -0.49 -5.78 10.35 -12.91 -0.13 -5.92 16 6 C 0.15 1.89 10.76 -17.13 -0.18 1.70 16 7 C -0.18 -2.20 5.89 -104.82 -0.62 -2.82 16 8 C 0.58 8.45 7.81 -12.34 -0.10 8.36 16 9 O -0.54 -9.51 16.71 5.32 0.09 -9.42 16 10 N -0.61 -8.10 3.32 -172.46 -0.57 -8.68 16 11 C 0.09 0.98 4.50 -2.96 -0.01 0.97 16 12 C -0.13 -1.58 4.92 -25.24 -0.12 -1.71 16 13 C -0.05 -0.81 0.55 -154.11 -0.08 -0.89 16 14 C 0.11 1.61 5.80 -2.87 -0.02 1.59 16 15 C -0.13 -2.23 4.85 -27.02 -0.13 -2.36 16 16 C 0.17 3.81 5.05 -3.63 -0.02 3.79 16 17 N -0.59 -13.80 2.98 -172.13 -0.51 -14.31 16 18 C -0.25 -6.72 9.55 -15.06 -0.14 -6.86 16 19 H 0.06 1.69 7.91 -52.48 -0.42 1.27 16 20 C 0.00 0.11 4.80 -17.43 -0.08 0.03 16 21 N -0.90 -25.16 11.41 55.49 0.63 -24.53 16 22 Si 0.90 21.20 29.60 -169.99 -5.03 16.16 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 C 0.15 2.81 6.24 -3.63 -0.02 2.79 16 27 C -0.12 -1.83 4.84 -27.01 -0.13 -1.96 16 28 C -0.08 -0.77 8.36 -38.87 -0.33 -1.10 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 32 H 0.08 0.43 8.10 -51.92 -0.42 0.01 16 33 H 0.08 0.38 8.09 -51.93 -0.42 -0.05 16 34 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.17 2.01 7.68 -52.48 -0.40 1.61 16 36 H 0.08 0.81 6.67 -51.93 -0.35 0.46 16 37 H 0.07 0.63 6.80 -51.93 -0.35 0.28 16 38 H 0.10 1.36 6.18 -51.93 -0.32 1.04 16 39 H 0.07 0.85 7.98 -51.93 -0.41 0.43 16 40 H 0.07 0.88 7.99 -51.93 -0.41 0.47 16 41 H 0.08 1.21 7.99 -51.93 -0.41 0.79 16 42 H 0.05 0.80 7.82 -51.93 -0.41 0.40 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 2.12 6.10 -51.93 -0.32 1.81 16 45 H 0.02 0.44 6.55 -51.93 -0.34 0.10 16 46 H 0.25 6.88 8.31 -40.82 -0.34 6.55 16 47 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 48 H 0.02 0.35 7.62 -51.93 -0.40 -0.04 16 49 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 50 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 51 H 0.17 1.48 2.95 -53.26 -0.16 1.32 16 LS Contribution 391.10 15.07 5.89 5.89 Total: -1.00 -31.05 391.10 -10.20 -41.25 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -8.04 Total: 0.15 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.52 Total: -0.61 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.59 Total: -53.43 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.05 -10.20 -41.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040775005.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.441 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds