Wall clock time and date at job start Wed Apr 1 2020 02:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47443 * 2 1 4 4 C 1.50700 * 109.47213 * 120.00238 * 2 1 3 5 5 C 1.38348 * 119.46018 * 274.97720 * 4 2 1 6 6 C 1.38360 * 119.30231 * 179.74055 * 5 4 2 7 7 C 1.40020 * 118.28915 * 0.54468 * 6 5 4 8 8 C 1.47836 * 120.56237 * 179.73458 * 7 6 5 9 9 O 1.21554 * 120.00182 * 219.57606 * 8 7 6 10 10 N 1.34781 * 120.00317 * 39.56973 * 8 7 6 11 11 C 1.44789 * 120.18156 * 174.58622 * 10 8 7 12 12 C 1.51518 * 112.21906 * 264.53360 * 11 10 8 13 13 C 1.51310 * 113.25341 * 285.36727 * 12 11 10 14 14 H 1.08992 * 111.31667 * 185.23700 * 13 12 11 15 15 C 1.54717 * 106.48118 * 307.66897 * 13 12 11 16 16 C 1.54612 * 104.29301 * 88.99269 * 15 13 12 17 17 C 1.50870 * 105.21327 * 11.53517 * 16 15 13 18 18 H 1.09004 * 105.89621 * 122.36998 * 17 16 15 19 19 C 1.49811 * 120.17363 * 354.56306 * 10 8 7 20 20 N 1.48053 * 109.90629 * 8.04009 * 17 16 15 21 21 C 1.36936 * 127.84144 * 155.15838 * 20 17 16 22 22 H 1.08004 * 120.00240 * 36.44537 * 21 20 17 23 23 C 1.38815 * 120.00545 * 216.44548 * 21 20 17 24 24 N 1.31620 * 119.99579 * 22.38562 * 23 21 20 25 25 Si 1.86792 * 120.00359 * 202.38020 * 23 21 20 26 26 H 1.48502 * 109.47158 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46884 * 119.99825 * 25 23 21 28 28 H 1.48496 * 109.47467 * 240.00033 * 25 23 21 29 29 C 1.39529 * 118.88245 * 359.45456 * 7 6 5 30 30 N 1.31690 * 120.56142 * 0.27967 * 29 7 6 31 31 H 1.09007 * 109.46757 * 299.99771 * 1 2 3 32 32 H 1.08996 * 109.47039 * 59.99869 * 1 2 3 33 33 H 1.09000 * 109.47090 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.46757 * 240.00229 * 2 1 3 35 35 H 1.09007 * 109.46957 * 60.00352 * 3 2 1 36 36 H 1.09002 * 109.47263 * 179.97438 * 3 2 1 37 37 H 1.09000 * 109.47561 * 300.00665 * 3 2 1 38 38 H 1.07995 * 120.34939 * 0.04297 * 5 4 2 39 39 H 1.08000 * 120.85635 * 180.29729 * 6 5 4 40 40 H 1.08999 * 108.92706 * 143.82907 * 11 10 8 41 41 H 1.08999 * 108.92937 * 25.24083 * 11 10 8 42 42 H 1.09001 * 108.72506 * 164.39575 * 12 11 10 43 43 H 1.08993 * 108.72652 * 46.34435 * 12 11 10 44 44 H 1.09007 * 110.45197 * 207.83933 * 15 13 12 45 45 H 1.09008 * 110.45411 * 330.38686 * 15 13 12 46 46 H 1.09004 * 110.17269 * 252.68210 * 16 15 13 47 47 H 1.08999 * 110.54131 * 130.58614 * 16 15 13 48 48 H 1.08998 * 109.55103 * 270.57145 * 19 10 8 49 49 H 1.09001 * 109.54785 * 30.85805 * 19 10 8 50 50 H 0.97004 * 120.00052 * 7.12707 * 24 23 21 51 51 H 1.07991 * 119.71919 * 180.25773 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.1606 -0.0094 2.4162 6 6 2.6170 -0.6662 3.5452 7 6 2.9441 -2.0234 3.4367 8 6 3.4420 -2.7727 4.6097 9 8 4.3351 -3.5865 4.4767 10 7 2.9059 -2.5535 5.8267 11 6 3.3072 -3.3659 6.9560 12 6 2.3596 -4.5240 7.1942 13 6 1.0461 -4.1030 7.8162 14 1 0.4272 -4.9669 8.0579 15 6 1.4016 -3.2724 9.0722 16 6 1.5231 -1.8225 8.5493 17 6 0.9613 -1.8581 7.1495 18 1 0.1470 -1.1337 7.1361 19 6 1.8920 -1.4674 6.0184 20 7 0.3446 -3.1783 6.8872 21 6 -0.6436 -3.4803 5.9887 22 1 -0.6741 -2.9811 5.0315 23 6 -1.6062 -4.4281 6.3081 24 7 -1.8563 -4.7131 7.5685 25 14 -2.5468 -5.2987 4.9492 26 1 -2.0815 -4.8029 3.6290 27 1 -2.3074 -6.7615 5.0405 28 1 -3.9986 -5.0245 5.0979 29 6 2.7865 -2.6581 2.2042 30 7 2.3430 -1.9907 1.1591 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.6768 1.9562 0.8901 36 1 3.1301 1.4424 0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.9026 1.0383 2.4614 39 1 2.7222 -0.1446 4.4850 40 1 3.3340 -2.7415 7.8490 41 1 4.3069 -3.7591 6.7713 42 1 2.8448 -5.2431 7.8542 43 1 2.1552 -5.0107 6.2406 44 1 0.6075 -3.3468 9.8153 45 1 2.3505 -3.6052 9.4930 46 1 2.5691 -1.5167 8.5289 47 1 0.9430 -1.1414 9.1720 48 1 2.3988 -0.5350 6.2669 49 1 1.3176 -1.3387 5.1009 50 1 -1.4451 -4.1906 8.2748 51 1 3.0307 -3.7055 2.1063 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045793439.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:42 Heat of formation + Delta-G solvation = 33.528040 kcal Electronic energy + Delta-G solvation = -31985.884594 eV Core-core repulsion = 28078.947750 eV Total energy + Delta-G solvation = -3906.936844 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.86366 -39.81591 -38.18800 -35.63686 -34.59156 -33.20167 -32.58400 -32.04108 -30.36068 -29.43904 -27.48008 -27.38216 -26.16757 -24.68223 -23.98514 -23.27231 -22.36248 -20.76148 -20.10914 -19.49202 -18.83486 -17.66326 -16.98328 -16.48372 -16.36176 -15.55691 -15.30901 -15.08651 -14.72251 -14.41503 -14.32719 -13.93377 -13.83953 -13.67607 -13.49587 -13.26257 -12.87392 -12.73589 -12.61697 -12.38615 -12.24556 -12.16844 -11.94952 -11.51372 -11.37894 -11.33729 -11.20562 -11.19124 -11.08719 -10.77785 -10.59852 -10.29323 -10.13822 -10.00991 -9.82760 -9.72779 -9.57376 -9.47340 -9.23812 -8.91858 -8.52325 -8.19879 -6.90680 -6.11849 -3.43959 0.83292 1.24865 2.94423 3.31883 3.45732 3.48528 3.61989 3.85578 4.07957 4.45526 4.51455 4.62721 4.81688 4.91348 4.93335 5.02544 5.04772 5.09952 5.17088 5.29981 5.34967 5.40669 5.44648 5.49029 5.59526 5.60577 5.61437 5.64420 5.71837 5.75594 5.77815 5.83353 5.93471 5.99657 6.00655 6.05075 6.10221 6.12501 6.18616 6.19837 6.39068 6.46734 6.57096 6.60573 6.67190 6.71714 6.93044 7.09483 7.16722 7.68598 7.86186 7.96209 8.42742 8.45753 8.89899 9.67628 10.39343 11.12009 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010158 B = 0.004452 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.895664 B = 6288.234063 C = 7675.374579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 C -0.147 4.147 4 C 0.149 3.851 5 C -0.178 4.178 6 C -0.046 4.046 7 C -0.173 4.173 8 C 0.563 3.437 9 O -0.549 6.549 10 N -0.578 5.578 11 C 0.116 3.884 12 C -0.145 4.145 13 C 0.146 3.854 14 H 0.084 0.916 15 C -0.131 4.131 16 C -0.117 4.117 17 C 0.123 3.877 18 H 0.044 0.956 19 C 0.102 3.898 20 N -0.571 5.571 21 C -0.321 4.321 22 H 0.050 0.950 23 C -0.014 4.014 24 N -0.906 5.906 25 Si 1.067 2.933 26 H -0.291 1.291 27 H -0.288 1.288 28 H -0.292 1.292 29 C 0.159 3.841 30 N -0.486 5.486 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.083 0.917 50 H 0.271 0.729 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.193 12.312 -6.241 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.067 4.067 3 C -0.205 4.205 4 C 0.011 3.989 5 C -0.198 4.198 6 C -0.073 4.073 7 C -0.178 4.178 8 C 0.350 3.650 9 O -0.428 6.428 10 N -0.308 5.308 11 C -0.007 4.007 12 C -0.186 4.186 13 C 0.039 3.961 14 H 0.102 0.898 15 C -0.170 4.170 16 C -0.155 4.155 17 C 0.016 3.984 18 H 0.062 0.938 19 C -0.021 4.021 20 N -0.294 5.294 21 C -0.450 4.450 22 H 0.068 0.932 23 C -0.218 4.218 24 N -0.544 5.544 25 Si 0.897 3.103 26 H -0.217 1.217 27 H -0.215 1.215 28 H -0.219 1.219 29 C 0.001 3.999 30 N -0.194 5.194 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.101 0.899 50 H 0.082 0.918 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.312 10.222 -7.479 14.625 hybrid contribution 1.068 1.628 1.175 2.274 sum 8.381 11.850 -6.303 15.824 Atomic orbital electron populations 1.21810 0.93315 1.02740 1.02148 1.20080 0.96421 0.95288 0.94923 1.21929 1.01282 0.94896 1.02363 1.21391 0.92870 0.89881 0.94739 1.21878 1.03170 1.01669 0.93074 1.22011 0.92851 0.93341 0.99053 1.20953 1.05014 0.95533 0.96321 1.18055 0.82019 0.82128 0.82755 1.90737 1.30618 1.36448 1.85042 1.48035 1.40849 1.34091 1.07865 1.20957 0.97947 0.93338 0.88450 1.21917 0.97661 0.97121 1.01854 1.21237 0.90969 0.94861 0.88990 0.89809 1.22732 1.00360 0.95009 0.98849 1.21843 0.99791 0.97760 0.96132 1.20482 0.94431 0.92330 0.91166 0.93836 1.22976 0.89633 0.87805 1.01716 1.44842 1.39926 0.99812 1.44863 1.19471 1.04113 1.27231 0.94151 0.93235 1.25952 0.95151 0.99940 1.00742 1.70692 1.41607 1.42556 0.99554 0.83501 0.75784 0.76611 0.74452 1.21706 1.21473 1.21881 1.22816 0.90873 0.99964 0.86239 1.67551 1.11952 1.08424 1.31473 0.92307 0.91865 0.92023 0.89190 0.92043 0.92391 0.91805 0.84277 0.83933 0.90258 0.91000 0.92645 0.92146 0.92070 0.91984 0.91913 0.91848 0.92481 0.89930 0.91791 0.82019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.18 37.16 0.34 -1.05 16 2 C -0.05 -0.49 3.23 -91.78 -0.30 -0.79 16 3 C -0.15 -1.13 8.61 37.15 0.32 -0.81 16 4 C 0.15 1.98 5.79 -82.51 -0.48 1.50 16 5 C -0.18 -2.16 9.16 -39.50 -0.36 -2.52 16 6 C -0.05 -0.63 7.60 -38.87 -0.30 -0.93 16 7 C -0.17 -2.88 5.28 -104.82 -0.55 -3.43 16 8 C 0.56 10.54 7.37 -12.33 -0.09 10.45 16 9 O -0.55 -11.63 16.40 5.32 0.09 -11.54 16 10 N -0.58 -10.20 2.87 -175.12 -0.50 -10.70 16 11 C 0.12 1.99 5.18 -5.71 -0.03 1.96 16 12 C -0.15 -2.81 5.01 -28.33 -0.14 -2.95 16 13 C 0.15 3.10 3.09 -66.69 -0.21 2.89 16 14 H 0.08 2.08 6.45 -51.93 -0.34 1.74 16 15 C -0.13 -2.24 6.04 -24.98 -0.15 -2.39 16 16 C -0.12 -1.83 5.80 -26.95 -0.16 -1.99 16 17 C 0.12 2.29 2.58 -68.85 -0.18 2.12 16 18 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 19 C 0.10 1.66 4.43 -2.90 -0.01 1.65 16 20 N -0.57 -13.21 2.30 -157.28 -0.36 -13.57 16 21 C -0.32 -8.59 10.09 -15.06 -0.15 -8.74 16 22 H 0.05 1.38 7.92 -52.48 -0.42 0.96 16 23 C -0.01 -0.38 5.20 -17.43 -0.09 -0.47 16 24 N -0.91 -26.17 12.59 55.49 0.70 -25.47 16 25 Si 1.07 25.30 29.97 -169.99 -5.10 20.21 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 C 0.16 2.66 10.81 -17.13 -0.19 2.48 16 30 N -0.49 -7.66 10.25 -9.14 -0.09 -7.76 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.43 6.48 -51.93 -0.34 0.09 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.14 1.26 6.29 -52.49 -0.33 0.93 16 39 H 0.14 1.66 5.54 -52.49 -0.29 1.37 16 40 H 0.08 1.20 3.92 -51.93 -0.20 1.00 16 41 H 0.07 1.25 7.16 -51.93 -0.37 0.88 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.06 0.91 7.38 -51.92 -0.38 0.53 16 46 H 0.06 0.84 6.13 -51.93 -0.32 0.52 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.06 0.73 7.23 -51.93 -0.38 0.36 16 49 H 0.08 1.44 5.58 -51.93 -0.29 1.15 16 50 H 0.27 7.81 7.08 -40.82 -0.29 7.52 16 51 H 0.16 2.65 8.06 -52.49 -0.42 2.23 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -31.85 384.90 -9.99 -41.84 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.81 Total: 4.22 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -2.72 Total: -3.03 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.26 Total: -57.50 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.10 Total: 20.21 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.85 -9.99 -41.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045793439.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.369 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds