Wall clock time and date at job start Wed Apr 1 2020 02:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46973 * 2 1 4 4 C 1.50700 * 109.47086 * 119.99873 * 2 1 3 5 5 O 1.21289 * 120.00214 * 241.65521 * 4 2 1 6 6 N 1.35009 * 120.00032 * 61.65121 * 4 2 1 7 7 C 1.44809 * 119.92723 * 354.88145 * 6 4 2 8 8 C 1.51376 * 113.17600 * 267.13789 * 7 6 4 9 9 C 1.51163 * 114.19438 * 295.01580 * 8 7 6 10 10 H 1.09652 * 110.70828 * 179.38163 * 9 8 7 11 11 C 1.54198 * 108.51869 * 301.36959 * 9 8 7 12 12 C 1.54007 * 104.63089 * 91.45212 * 11 9 8 13 13 C 1.52105 * 105.46941 * 12.86379 * 12 11 9 14 14 H 1.09427 * 108.26913 * 122.05088 * 13 12 11 15 15 C 1.49290 * 119.95013 * 174.54305 * 6 4 2 16 16 N 1.47713 * 109.62001 * 4.28114 * 13 12 11 17 17 C 1.37129 * 127.26325 * 159.25100 * 16 13 12 18 18 H 1.07996 * 119.99859 * 148.67847 * 17 16 13 19 19 C 1.38812 * 119.99760 * 328.67255 * 17 16 13 20 20 N 1.31621 * 119.99802 * 163.09402 * 19 17 16 21 21 Si 1.86798 * 120.00329 * 343.09919 * 19 17 16 22 22 H 1.48493 * 109.47342 * 85.92793 * 21 19 17 23 23 H 1.48499 * 109.46786 * 205.92900 * 21 19 17 24 24 H 1.48500 * 109.46962 * 325.92482 * 21 19 17 25 25 C 1.50700 * 109.47282 * 239.99859 * 2 1 3 26 26 C 1.38668 * 120.41604 * 54.49661 * 25 2 1 27 27 C 1.38626 * 118.42121 * 179.97438 * 26 25 2 28 28 C 1.38230 * 119.16017 * 0.02562 * 27 26 25 29 29 N 1.31854 * 120.76065 * 0.02562 * 28 27 26 30 30 C 1.31881 * 121.72680 * 359.69897 * 29 28 27 31 31 H 1.09002 * 109.47457 * 282.27269 * 1 2 3 32 32 H 1.08996 * 109.47352 * 42.27317 * 1 2 3 33 33 H 1.08998 * 109.47267 * 162.27316 * 1 2 3 34 34 H 1.08998 * 109.47058 * 184.50826 * 3 2 1 35 35 H 1.08998 * 109.47512 * 304.50870 * 3 2 1 36 36 H 1.09009 * 109.47018 * 64.51182 * 3 2 1 37 37 H 1.08832 * 109.22045 * 145.03262 * 7 6 4 38 38 H 1.09376 * 108.35695 * 27.56392 * 7 6 4 39 39 H 1.09252 * 108.71893 * 56.59439 * 8 7 6 40 40 H 1.09275 * 108.50986 * 173.64812 * 8 7 6 41 41 H 1.09295 * 110.71144 * 332.21810 * 11 9 8 42 42 H 1.09394 * 110.57318 * 210.44588 * 11 9 8 43 43 H 1.09042 * 110.67104 * 253.24926 * 12 11 9 44 44 H 1.09303 * 110.23107 * 131.75440 * 12 11 9 45 45 H 1.09108 * 109.48696 * 257.20658 * 15 6 4 46 46 H 1.09192 * 109.47072 * 16.89158 * 15 6 4 47 47 H 0.96997 * 120.00491 * 179.97438 * 20 19 17 48 48 H 1.08004 * 120.78980 * 0.02733 * 26 25 2 49 49 H 1.08002 * 120.42515 * 180.02562 * 27 26 25 50 50 H 1.08001 * 119.61880 * 179.97438 * 28 27 26 51 51 H 1.08005 * 119.61675 * 180.31514 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7046 -0.1126 2.0439 6 7 1.7339 -2.0123 1.4275 7 6 0.8407 -2.6948 0.5147 8 6 -0.6049 -2.6663 0.9628 9 6 -0.8702 -3.4174 2.2476 10 1 -1.9291 -3.3507 2.5242 11 6 -0.4425 -4.8861 2.0535 12 6 1.0249 -4.9288 2.5190 13 6 1.2590 -3.6122 3.2438 14 1 1.5823 -3.8357 4.2651 15 6 2.3312 -2.7475 2.5813 16 7 -0.0069 -2.8546 3.3174 17 6 -0.3225 -1.8483 4.1939 18 1 -0.9893 -1.0556 3.8884 19 6 0.2149 -1.8487 5.4737 20 7 0.1951 -0.7486 6.1961 21 14 0.9664 -3.4103 6.1707 22 1 2.3870 -3.5070 5.7493 23 1 0.8911 -3.3768 7.6534 24 1 0.2183 -4.5887 5.6637 25 6 2.0324 -0.7104 -1.2304 26 6 1.6116 -0.3141 -2.4909 27 6 2.1003 -0.9962 -3.5944 28 6 2.9841 -2.0417 -3.4028 29 7 3.3616 -2.3918 -2.1890 30 6 2.9213 -1.7622 -1.1171 31 1 -0.3634 0.2184 1.0042 32 1 -0.3634 0.7604 -0.6912 33 1 -0.3634 -0.9788 -0.3129 34 1 3.1269 1.4436 -0.0808 35 1 1.6122 1.9792 -0.8468 36 1 1.7441 1.9325 0.9277 37 1 1.1637 -3.7281 0.4028 38 1 0.9111 -2.2101 -0.4633 39 1 -0.9104 -1.6258 1.0956 40 1 -1.2221 -3.0983 0.1713 41 1 -0.5221 -5.1763 1.0027 42 1 -1.0586 -5.5502 2.6668 43 1 1.6970 -5.0210 1.6653 44 1 1.1806 -5.7678 3.2020 45 1 3.1458 -3.3810 2.2269 46 1 2.7227 -2.0309 3.3062 47 1 0.5703 -0.7489 7.0906 48 1 0.9203 0.5071 -2.6101 49 1 1.7945 -0.7144 -4.5911 50 1 3.3691 -2.5785 -4.2573 51 1 3.2570 -2.0743 -0.1392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045806857.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:03 Heat of formation + Delta-G solvation = 65.380786 kcal Electronic energy + Delta-G solvation = -33620.797587 eV Core-core repulsion = 29715.241982 eV Total energy + Delta-G solvation = -3905.555605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.45101 -39.65096 -38.33501 -35.65728 -34.43538 -32.86563 -32.31484 -31.97898 -30.36553 -30.04578 -27.81729 -27.14241 -25.99499 -24.54835 -23.65138 -23.46114 -22.73053 -21.20166 -20.12789 -19.35257 -18.06199 -17.65664 -16.99577 -16.60243 -16.29508 -15.68374 -15.52696 -15.08475 -14.74818 -14.57643 -14.31828 -13.80676 -13.60983 -13.38564 -13.27163 -13.22572 -12.86445 -12.69218 -12.41489 -12.36686 -12.25189 -12.18427 -12.02874 -11.66843 -11.48269 -11.36109 -11.25387 -11.16697 -11.01031 -10.90656 -10.69673 -10.43488 -10.16161 -9.90187 -9.81426 -9.64587 -9.52060 -9.45702 -9.12120 -8.88579 -8.49453 -8.01113 -6.90791 -5.93018 -3.32826 0.96574 1.15226 3.06968 3.31007 3.43501 3.45821 3.52170 3.67994 4.28299 4.51493 4.53743 4.62825 4.77203 4.83719 4.85981 5.01605 5.08144 5.12271 5.18284 5.21282 5.31401 5.38516 5.40821 5.50840 5.59954 5.61668 5.68242 5.72794 5.79490 5.83591 5.87167 5.91702 5.96636 6.00057 6.04022 6.07833 6.15930 6.23277 6.26305 6.31498 6.36282 6.39814 6.40734 6.57108 6.60784 6.67354 6.78347 6.87827 7.09511 7.83720 7.86881 7.97565 8.36313 8.71060 8.83982 9.69399 10.27953 11.23446 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.004846 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.465942 B = 5776.473614 C = 6410.266622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.036 4.036 3 C -0.122 4.122 4 C 0.525 3.475 5 O -0.528 6.528 6 N -0.579 5.579 7 C 0.109 3.891 8 C -0.161 4.161 9 C 0.154 3.846 10 H 0.067 0.933 11 C -0.128 4.128 12 C -0.123 4.123 13 C 0.122 3.878 14 H 0.049 0.951 15 C 0.108 3.892 16 N -0.584 5.584 17 C -0.230 4.230 18 H 0.083 0.917 19 C 0.033 3.967 20 N -0.904 5.904 21 Si 0.886 3.114 22 H -0.283 1.283 23 H -0.304 1.304 24 H -0.273 1.273 25 C -0.116 4.116 26 C -0.068 4.068 27 C -0.173 4.173 28 C 0.089 3.911 29 N -0.480 5.480 30 C 0.104 3.896 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.090 0.910 47 H 0.263 0.737 48 H 0.135 0.865 49 H 0.134 0.866 50 H 0.153 0.847 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.918 -3.302 -20.166 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.040 4.040 3 C -0.180 4.180 4 C 0.312 3.688 5 O -0.404 6.404 6 N -0.311 5.311 7 C -0.015 4.015 8 C -0.202 4.202 9 C 0.047 3.953 10 H 0.085 0.915 11 C -0.167 4.167 12 C -0.161 4.161 13 C 0.015 3.985 14 H 0.066 0.934 15 C -0.015 4.015 16 N -0.307 5.307 17 C -0.357 4.357 18 H 0.101 0.899 19 C -0.167 4.167 20 N -0.546 5.546 21 Si 0.718 3.282 22 H -0.212 1.212 23 H -0.233 1.233 24 H -0.199 1.199 25 C -0.118 4.118 26 C -0.094 4.094 27 C -0.192 4.192 28 C -0.068 4.068 29 N -0.189 5.189 30 C -0.053 4.053 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.073 0.927 48 H 0.153 0.847 49 H 0.152 0.848 50 H 0.170 0.830 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.855 -3.503 -19.354 19.756 hybrid contribution -0.201 -0.190 0.429 0.511 sum 1.654 -3.693 -18.925 19.353 Atomic orbital electron populations 1.22483 0.91521 1.03395 1.03698 1.19707 0.97711 0.96371 0.90191 1.21675 1.01426 0.92240 1.02625 1.20156 0.80333 0.81592 0.86756 1.90703 1.39490 1.64827 1.45385 1.47830 1.45690 1.09785 1.27834 1.21120 0.90386 0.97809 0.92177 1.22319 0.95710 1.03305 0.98826 1.21116 0.95487 0.89966 0.88734 0.91519 1.22534 0.95977 0.98163 1.00046 1.22034 0.97177 0.97180 0.99684 1.21312 0.89102 0.90757 0.97357 0.93409 1.22564 0.94824 0.95908 0.88209 1.45046 1.07684 1.40675 1.37340 1.18407 1.28716 0.98683 0.89939 0.89939 1.25232 0.99039 0.96509 0.95892 1.69776 1.47606 1.25790 1.11423 0.86828 0.78750 0.85681 0.76911 1.21179 1.23270 1.19912 1.20640 0.98680 0.97450 0.95013 1.21383 0.97995 0.98674 0.91361 1.22100 0.99560 0.97887 0.99696 1.22787 0.94427 0.94662 0.94935 1.67770 1.23642 1.28555 0.98885 1.23125 0.92620 0.91498 0.98070 0.90460 0.92003 0.90051 0.92179 0.92260 0.90743 0.91341 0.90906 0.90533 0.92567 0.91822 0.92130 0.91511 0.92091 0.92986 0.89181 0.92687 0.84681 0.84822 0.82956 0.82316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 6.38 37.16 0.24 -1.78 16 2 C -0.04 -0.51 0.60 -156.81 -0.09 -0.61 16 3 C -0.12 -1.68 7.60 37.16 0.28 -1.39 16 4 C 0.52 9.89 5.19 -10.88 -0.06 9.83 16 5 O -0.53 -12.31 15.36 5.55 0.09 -12.22 16 6 N -0.58 -10.33 1.49 -173.50 -0.26 -10.58 16 7 C 0.11 1.60 3.28 -5.77 -0.02 1.59 16 8 C -0.16 -2.44 3.87 -28.48 -0.11 -2.55 16 9 C 0.15 2.76 3.82 -67.10 -0.26 2.50 16 10 H 0.07 1.23 8.20 -51.56 -0.42 0.81 16 11 C -0.13 -1.95 6.00 -25.58 -0.15 -2.11 16 12 C -0.12 -1.99 5.73 -26.66 -0.15 -2.15 16 13 C 0.12 2.50 2.26 -67.80 -0.15 2.35 16 14 H 0.05 1.12 2.52 -51.69 -0.13 0.99 16 15 C 0.11 2.16 6.01 -2.57 -0.02 2.14 16 16 N -0.58 -13.14 2.01 -156.13 -0.31 -13.45 16 17 C -0.23 -6.32 10.65 -14.97 -0.16 -6.48 16 18 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 19 C 0.03 0.97 5.47 -17.43 -0.10 0.87 16 20 N -0.90 -28.09 13.97 55.49 0.78 -27.31 16 21 Si 0.89 22.69 24.85 -169.99 -4.22 18.47 16 22 H -0.28 -7.08 6.65 56.52 0.38 -6.71 16 23 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 C -0.12 -1.45 3.09 -104.49 -0.32 -1.77 16 26 C -0.07 -0.67 9.05 -39.28 -0.36 -1.03 16 27 C -0.17 -1.50 10.11 -39.44 -0.40 -1.90 16 28 C 0.09 0.89 11.18 -17.55 -0.20 0.70 16 29 N -0.48 -6.32 10.36 -13.25 -0.14 -6.46 16 30 C 0.10 1.44 8.22 -17.55 -0.14 1.30 16 31 H 0.08 1.24 7.39 -51.93 -0.38 0.86 16 32 H 0.06 0.64 7.70 -51.93 -0.40 0.24 16 33 H 0.08 1.01 3.91 -51.93 -0.20 0.80 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.62 7.92 -51.93 -0.41 0.21 16 36 H 0.07 1.16 7.95 -51.92 -0.41 0.75 16 37 H 0.07 0.96 5.44 -52.02 -0.28 0.68 16 38 H 0.07 0.98 2.95 -51.72 -0.15 0.82 16 39 H 0.08 1.26 4.94 -51.79 -0.26 1.01 16 40 H 0.06 0.70 8.15 -51.77 -0.42 0.27 16 41 H 0.06 0.80 7.73 -51.76 -0.40 0.40 16 42 H 0.06 0.92 8.17 -51.71 -0.42 0.50 16 43 H 0.07 0.94 6.39 -51.91 -0.33 0.61 16 44 H 0.06 0.96 8.17 -51.76 -0.42 0.54 16 45 H 0.05 0.89 7.93 -51.87 -0.41 0.48 16 46 H 0.09 2.14 7.12 -51.82 -0.37 1.78 16 47 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 48 H 0.14 1.05 7.75 -52.48 -0.41 0.64 16 49 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 50 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 51 H 0.16 2.47 5.58 -52.48 -0.29 2.18 16 LS Contribution 363.93 15.07 5.48 5.48 Total: -1.00 -33.54 363.93 -8.14 -41.68 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.39 Total: 4.88 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -2.16 Total: -0.48 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.06 Total: -57.81 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.22 Total: 18.47 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.54 -8.14 -41.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045806857.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.059 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds