Wall clock time and date at job start Wed Apr 1 2020 02:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47228 * 2 1 4 4 C 1.50701 * 109.47012 * 120.00108 * 2 1 3 5 5 C 1.38602 * 119.54987 * 274.99807 * 4 2 1 6 6 C 1.38589 * 119.34921 * 179.97438 * 5 4 2 7 7 C 1.38634 * 118.48780 * 0.02562 * 6 5 4 8 8 C 1.39265 * 119.06102 * 359.97438 * 7 6 5 9 9 C 1.48168 * 119.72065 * 179.97438 * 8 7 6 10 10 O 1.21521 * 119.99798 * 5.91598 * 9 8 7 11 11 N 1.34776 * 120.00140 * 185.91220 * 9 8 7 12 12 C 1.44787 * 120.18113 * 177.33668 * 11 9 8 13 13 C 1.51514 * 112.22042 * 264.53743 * 12 11 9 14 14 C 1.51317 * 113.24955 * 285.36207 * 13 12 11 15 15 H 1.08996 * 111.31606 * 185.23475 * 14 13 12 16 16 C 1.54713 * 106.48338 * 307.66494 * 14 13 12 17 17 C 1.54625 * 104.28909 * 88.98795 * 16 14 13 18 18 C 1.50869 * 105.21373 * 11.54461 * 17 16 14 19 19 H 1.08996 * 105.90512 * 122.36153 * 18 17 16 20 20 C 1.49811 * 120.17955 * 357.31517 * 11 9 8 21 21 N 1.48067 * 109.90672 * 8.02932 * 18 17 16 22 22 C 1.36935 * 127.83925 * 155.16219 * 21 18 17 23 23 H 1.07999 * 119.99778 * 36.05653 * 22 21 18 24 24 C 1.38812 * 120.00041 * 216.05070 * 22 21 18 25 25 N 1.31609 * 120.00152 * 23.56424 * 24 22 21 26 26 Si 1.86805 * 119.99864 * 203.55883 * 24 22 21 27 27 H 1.48498 * 109.46781 * 90.00117 * 26 24 22 28 28 H 1.48504 * 109.47112 * 210.00181 * 26 24 22 29 29 H 1.48496 * 109.47148 * 330.00315 * 26 24 22 30 30 N 1.31501 * 119.54956 * 95.24773 * 4 2 1 31 31 H 1.09005 * 109.46917 * 300.00281 * 1 2 3 32 32 H 1.09005 * 109.46948 * 59.99559 * 1 2 3 33 33 H 1.09001 * 109.47605 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46502 * 240.00001 * 2 1 3 35 35 H 1.09002 * 109.46959 * 180.02562 * 3 2 1 36 36 H 1.09005 * 109.47516 * 300.00093 * 3 2 1 37 37 H 1.09005 * 109.47401 * 60.00016 * 3 2 1 38 38 H 1.08000 * 120.32577 * 359.95927 * 5 4 2 39 39 H 1.07999 * 120.75025 * 179.97438 * 6 5 4 40 40 H 1.08002 * 120.46429 * 179.97438 * 7 6 5 41 41 H 1.08998 * 108.93317 * 143.82604 * 12 11 9 42 42 H 1.09000 * 108.93161 * 25.23711 * 12 11 9 43 43 H 1.09002 * 108.72858 * 164.39464 * 13 12 11 44 44 H 1.09000 * 108.72890 * 46.33500 * 13 12 11 45 45 H 1.09001 * 110.45705 * 207.83397 * 16 14 13 46 46 H 1.09004 * 110.45456 * 330.39201 * 16 14 13 47 47 H 1.08991 * 110.17381 * 252.68171 * 17 16 14 48 48 H 1.09005 * 110.53343 * 130.58118 * 17 16 14 49 49 H 1.09004 * 109.54683 * 270.57809 * 20 11 9 50 50 H 1.09004 * 109.54779 * 30.75696 * 20 11 9 51 51 H 0.97004 * 120.00501 * 6.90867 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1611 -0.0100 2.4195 6 6 2.6230 -0.6676 3.5487 7 6 2.9422 -2.0127 3.4463 8 6 2.7881 -2.6531 2.2192 9 6 3.1255 -4.0903 2.0932 10 8 3.4315 -4.7313 3.0792 11 7 3.0930 -4.6867 0.8850 12 6 3.4775 -6.0759 0.7484 13 6 4.9271 -6.2314 0.3361 14 6 5.1728 -5.9003 -1.1199 15 1 6.2036 -6.1100 -1.4054 16 6 4.1610 -6.7381 -1.9373 17 6 2.9073 -5.8379 -2.0303 18 6 3.3565 -4.4819 -1.5448 19 1 3.1501 -3.7891 -2.3605 20 6 2.6584 -3.9160 -0.3239 21 7 4.8253 -4.4746 -1.3577 22 6 5.6709 -3.3981 -1.3906 23 1 5.3480 -2.4456 -0.9971 24 6 6.9432 -3.5311 -1.9295 25 7 7.1925 -4.4857 -2.8005 26 14 8.3016 -2.3549 -1.4187 27 1 9.0144 -2.9050 -0.2377 28 1 9.2594 -2.1873 -2.5412 29 1 7.7110 -1.0376 -1.0710 30 7 2.3472 -1.9853 1.1602 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.9044 1.0380 2.4656 39 1 2.7324 -0.1437 4.4867 40 1 3.3053 -2.5563 4.3060 41 1 2.8436 -6.5461 -0.0033 42 1 3.3253 -6.5804 1.7026 43 1 5.2340 -7.2615 0.5173 44 1 5.5390 -5.5729 0.9527 45 1 4.5561 -6.9491 -2.9310 46 1 3.9247 -7.6654 -1.4154 47 1 2.1170 -6.2265 -1.3881 48 1 2.5584 -5.7735 -3.0610 49 1 1.5789 -4.0059 -0.4450 50 1 2.9256 -2.8662 -0.2026 51 1 6.4674 -5.0324 -3.1418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045809778.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:53 Heat of formation + Delta-G solvation = 44.953336 kcal Electronic energy + Delta-G solvation = -32494.265786 eV Core-core repulsion = 28587.824381 eV Total energy + Delta-G solvation = -3906.441406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.83502 -39.65409 -38.06595 -35.55962 -34.43363 -33.04614 -32.45562 -31.99467 -30.29332 -29.31448 -27.52782 -27.19745 -25.90294 -24.40447 -23.96309 -23.61806 -22.16829 -20.82333 -19.84009 -19.24677 -18.61100 -17.50957 -16.97284 -16.59988 -16.04045 -15.41974 -15.23184 -15.17265 -14.62764 -14.43729 -14.21458 -13.84817 -13.78488 -13.62574 -13.31763 -12.98986 -12.80457 -12.67172 -12.55329 -12.23688 -12.12642 -12.03580 -11.87625 -11.41787 -11.31373 -11.27912 -11.06539 -11.06099 -10.98984 -10.70076 -10.49990 -10.22871 -10.09412 -9.94607 -9.84411 -9.67290 -9.46170 -9.33816 -8.97094 -8.78903 -8.39409 -7.95222 -6.77775 -6.02169 -3.31385 0.77457 1.22600 3.02396 3.42269 3.48676 3.51358 3.66694 3.99741 4.02823 4.51157 4.55680 4.72175 4.92285 4.95825 5.04294 5.11691 5.17074 5.20661 5.31306 5.36988 5.46226 5.48250 5.53010 5.62282 5.65134 5.67725 5.71026 5.79956 5.84926 5.88494 5.97454 6.02957 6.10444 6.12649 6.13816 6.14803 6.21614 6.24986 6.29704 6.44473 6.52128 6.56234 6.69315 6.75585 6.84896 7.00120 7.16692 7.22159 7.30490 7.80345 7.92612 7.98537 8.53478 8.59670 9.01544 9.78574 10.52849 11.21364 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009420 B = 0.005004 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.799935 B = 5594.331544 C = 6471.982535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 C -0.147 4.147 4 C 0.130 3.870 5 C -0.155 4.155 6 C -0.081 4.081 7 C -0.122 4.122 8 C 0.098 3.902 9 C 0.563 3.437 10 O -0.555 6.555 11 N -0.562 5.562 12 C 0.113 3.887 13 C -0.144 4.144 14 C 0.147 3.853 15 H 0.082 0.918 16 C -0.130 4.130 17 C -0.119 4.119 18 C 0.122 3.878 19 H 0.041 0.959 20 C 0.096 3.904 21 N -0.572 5.572 22 C -0.315 4.315 23 H 0.050 0.950 24 C -0.017 4.017 25 N -0.908 5.908 26 Si 1.065 2.935 27 H -0.293 1.293 28 H -0.289 1.289 29 H -0.292 1.292 30 N -0.440 5.440 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.049 0.951 50 H 0.133 0.867 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.899 6.895 6.814 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.205 4.205 4 C -0.009 4.009 5 C -0.175 4.175 6 C -0.106 4.106 7 C -0.143 4.143 8 C -0.040 4.040 9 C 0.350 3.650 10 O -0.435 6.435 11 N -0.291 5.291 12 C -0.010 4.010 13 C -0.184 4.184 14 C 0.040 3.960 15 H 0.100 0.900 16 C -0.169 4.169 17 C -0.157 4.157 18 C 0.015 3.985 19 H 0.059 0.941 20 C -0.027 4.027 21 N -0.295 5.295 22 C -0.444 4.444 23 H 0.067 0.933 24 C -0.221 4.221 25 N -0.546 5.546 26 Si 0.895 3.105 27 H -0.220 1.220 28 H -0.215 1.215 29 H -0.219 1.219 30 N -0.152 5.152 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.163 0.837 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.067 0.933 50 H 0.150 0.850 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.097 6.531 6.328 15.134 hybrid contribution -1.432 0.154 0.980 1.742 sum -13.529 6.685 7.308 16.767 Atomic orbital electron populations 1.21787 0.93634 1.02340 1.01891 1.20077 0.96053 0.95505 0.95136 1.21920 1.01772 0.94727 1.02052 1.21433 0.94441 0.90119 0.94918 1.22136 1.00555 1.01380 0.93406 1.21563 0.96139 0.93979 0.98946 1.22057 0.98675 0.95046 0.98509 1.21254 0.98004 0.94866 0.89900 1.17868 0.78268 0.85271 0.83642 1.90715 1.50833 1.64474 1.37460 1.48076 1.61938 1.11693 1.07405 1.20983 0.96812 0.81743 1.01462 1.21905 0.95916 0.99967 1.00611 1.21206 0.97977 0.86143 0.90679 0.89988 1.22724 0.96124 0.97555 1.00522 1.21875 0.97512 0.96282 1.00021 1.20615 0.88305 0.95214 0.94399 0.94139 1.23543 0.96280 0.99590 0.83308 1.44813 0.99900 1.02471 1.82338 1.19459 0.97269 0.90154 1.37492 0.93260 1.25892 0.99760 1.01817 0.94627 1.70700 1.36469 1.22170 1.25264 0.83526 0.75975 0.75035 0.75999 1.22030 1.21478 1.21874 1.67885 1.10093 1.08555 1.28686 0.92731 0.91848 0.92244 0.88692 0.92060 0.91750 0.92390 0.84492 0.84363 0.83749 0.90262 0.91305 0.92816 0.92252 0.92197 0.92163 0.92084 0.92124 0.93313 0.85029 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.18 37.16 0.34 -0.92 16 2 C -0.05 -0.54 3.23 -91.77 -0.30 -0.83 16 3 C -0.15 -1.34 8.62 37.15 0.32 -1.02 16 4 C 0.13 1.74 5.79 -82.60 -0.48 1.27 16 5 C -0.15 -1.74 9.18 -39.32 -0.36 -2.10 16 6 C -0.08 -0.92 10.17 -39.31 -0.40 -1.32 16 7 C -0.12 -1.79 9.63 -39.05 -0.38 -2.17 16 8 C 0.10 1.71 6.66 -83.01 -0.55 1.16 16 9 C 0.56 11.31 7.67 -12.18 -0.09 11.22 16 10 O -0.56 -12.11 15.81 5.35 0.08 -12.02 16 11 N -0.56 -10.99 2.87 -175.00 -0.50 -11.49 16 12 C 0.11 2.10 5.16 -5.71 -0.03 2.07 16 13 C -0.14 -2.95 5.01 -28.33 -0.14 -3.09 16 14 C 0.15 3.28 3.11 -66.68 -0.21 3.07 16 15 H 0.08 2.11 6.49 -51.93 -0.34 1.78 16 16 C -0.13 -2.39 6.04 -24.98 -0.15 -2.54 16 17 C -0.12 -2.05 5.80 -26.95 -0.16 -2.20 16 18 C 0.12 2.48 2.59 -68.85 -0.18 2.30 16 19 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 20 C 0.10 1.79 5.17 -2.91 -0.02 1.78 16 21 N -0.57 -13.90 2.30 -157.28 -0.36 -14.27 16 22 C -0.32 -8.71 10.08 -15.06 -0.15 -8.86 16 23 H 0.05 1.42 7.93 -52.49 -0.42 1.00 16 24 C -0.02 -0.48 5.18 -17.43 -0.09 -0.57 16 25 N -0.91 -26.87 12.58 55.49 0.70 -26.17 16 26 Si 1.06 25.75 29.98 -169.99 -5.10 20.66 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 N -0.44 -7.22 5.81 -6.06 -0.04 -7.26 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.43 6.49 -51.93 -0.34 0.09 16 38 H 0.14 1.12 6.30 -52.49 -0.33 0.79 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.14 2.04 7.65 -52.49 -0.40 1.64 16 41 H 0.08 1.33 3.92 -51.93 -0.20 1.13 16 42 H 0.07 1.27 7.19 -51.93 -0.37 0.90 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.06 0.95 7.38 -51.93 -0.38 0.57 16 47 H 0.06 0.93 6.13 -51.93 -0.32 0.62 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.13 2.64 4.79 -64.88 -0.31 2.33 16 51 H 0.27 8.02 7.15 -40.82 -0.29 7.73 16 LS Contribution 386.08 15.07 5.82 5.82 Total: -1.00 -32.39 386.08 -10.40 -42.80 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.99 Total: 4.70 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -3.02 Total: -2.78 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.20 Total: -59.18 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.10 Total: 20.66 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.39 -10.40 -42.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045809778.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.750 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds