Wall clock time and date at job start Wed Apr 1 2020 02:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47395 * 2 1 4 4 C 1.50695 * 109.46942 * 240.00316 * 2 1 3 5 5 O 1.21281 * 120.00038 * 330.58876 * 4 2 1 6 6 N 1.34774 * 120.00242 * 150.58774 * 4 2 1 7 7 C 1.46505 * 120.00328 * 184.55968 * 6 4 2 8 8 H 1.08996 * 109.32348 * 43.64452 * 7 6 4 9 9 C 1.53036 * 109.32299 * 284.18264 * 7 6 4 10 10 C 1.53973 * 108.82721 * 295.14127 * 9 7 6 11 11 H 1.08999 * 113.67236 * 168.56315 * 10 9 7 12 12 C 1.55431 * 106.41393 * 293.82634 * 10 9 7 13 13 C 1.55160 * 100.35617 * 73.37354 * 12 10 9 14 14 H 1.09004 * 113.05244 * 162.98370 * 13 12 10 15 15 C 1.52982 * 109.32624 * 163.29487 * 7 6 4 16 16 N 1.47791 * 104.25256 * 40.55238 * 13 12 10 17 17 C 1.36946 * 125.85700 * 153.51737 * 16 13 12 18 18 H 1.07993 * 119.99673 * 11.95377 * 17 16 13 19 19 C 1.38809 * 119.99851 * 191.95760 * 17 16 13 20 20 N 1.31624 * 120.00244 * 8.17871 * 19 17 16 21 21 Si 1.86797 * 119.99946 * 188.18466 * 19 17 16 22 22 H 1.48503 * 109.46923 * 5.05555 * 21 19 17 23 23 H 1.48500 * 109.47464 * 125.05624 * 21 19 17 24 24 H 1.48504 * 109.47149 * 245.05850 * 21 19 17 25 25 C 1.47079 * 108.28829 * 333.53823 * 16 13 12 26 26 C 1.50700 * 109.47215 * 120.00207 * 2 1 3 27 27 C 1.38670 * 120.42126 * 292.19050 * 26 2 1 28 28 C 1.38624 * 118.42249 * 179.97438 * 27 26 2 29 29 C 1.38225 * 119.16126 * 0.02562 * 28 27 26 30 30 N 1.31857 * 120.76595 * 0.24974 * 29 28 27 31 31 C 1.31887 * 121.71764 * 359.48055 * 30 29 28 32 32 H 1.09003 * 109.46641 * 305.08676 * 1 2 3 33 33 H 1.09001 * 109.46937 * 65.08486 * 1 2 3 34 34 H 1.08994 * 109.47022 * 185.09464 * 1 2 3 35 35 H 1.08994 * 109.47349 * 183.68427 * 3 2 1 36 36 H 1.08997 * 109.47537 * 303.69040 * 3 2 1 37 37 H 1.09002 * 109.47113 * 63.68710 * 3 2 1 38 38 H 0.96999 * 119.99775 * 4.56102 * 6 4 2 39 39 H 1.09000 * 109.57932 * 54.94217 * 9 7 6 40 40 H 1.09002 * 109.57819 * 175.33887 * 9 7 6 41 41 H 1.09005 * 111.23473 * 315.59830 * 12 10 9 42 42 H 1.09000 * 111.23433 * 191.15373 * 12 10 9 43 43 H 1.09000 * 109.53155 * 185.06208 * 15 7 6 44 44 H 1.08999 * 109.53031 * 305.28485 * 15 7 6 45 45 H 0.96999 * 119.99949 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.97959 * 120.45927 * 25 16 13 47 47 H 1.09004 * 109.97557 * 241.70096 * 25 16 13 48 48 H 1.08003 * 120.78813 * 359.95376 * 27 26 2 49 49 H 1.08008 * 120.41744 * 179.97438 * 28 27 26 50 50 H 1.08005 * 119.61868 * 179.97438 * 29 28 27 51 51 H 1.08006 * 119.61062 * 180.26428 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.3718 -1.5953 -1.7319 6 7 3.2155 -0.3622 -1.7738 7 6 3.6576 -0.9821 -3.0255 8 1 2.8209 -1.0235 -3.7227 9 6 4.1460 -2.4043 -2.7412 10 6 5.3957 -2.3307 -1.8448 11 1 5.6951 -3.2938 -1.4313 12 6 6.5083 -1.6580 -2.6967 13 6 6.0063 -0.1898 -2.7017 14 1 6.7771 0.5238 -2.9930 15 6 4.7837 -0.1449 -3.6350 16 7 5.5220 0.0339 -1.3234 17 6 5.4610 1.2416 -0.6806 18 1 5.5980 2.1569 -1.2371 19 6 5.2233 1.2891 0.6861 20 7 5.2166 0.1782 1.3920 21 14 4.9128 2.9297 1.5236 22 1 4.8515 4.0040 0.5002 23 1 3.6246 2.8735 2.2602 24 1 6.0156 3.2158 2.4761 25 6 5.1170 -1.2631 -0.7604 26 6 2.0324 -0.7104 1.2304 27 6 1.8407 -0.1579 2.4877 28 6 2.3192 -0.8470 3.5913 29 6 2.9675 -2.0532 3.4030 30 7 3.1367 -2.5461 2.1918 31 6 2.6903 -1.9206 1.1200 32 1 -0.3633 0.5907 0.8410 33 1 -0.3633 0.4329 -0.9320 34 1 -0.3633 -1.0236 0.0913 35 1 3.1280 1.4432 -0.0660 36 1 1.6238 1.9751 -0.8550 37 1 1.7317 1.9369 0.9212 38 1 3.7744 0.2989 -1.3362 39 1 3.3627 -2.9643 -2.2305 40 1 4.3982 -2.8983 -3.6796 41 1 6.5359 -2.0692 -3.7058 42 1 7.4811 -1.7410 -2.2121 43 1 5.0539 -0.5519 -4.6094 44 1 4.4501 0.8864 -3.7494 45 1 5.0501 0.2114 2.3470 46 1 5.7012 -1.4795 0.1340 47 1 4.0548 -1.2478 -0.5164 48 1 1.3309 0.7871 2.6044 49 1 2.1879 -0.4460 4.5855 50 1 3.3437 -2.5961 4.2575 51 1 2.8440 -2.3575 0.1443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047100596.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:23 Heat of formation + Delta-G solvation = 80.428074 kcal Electronic energy + Delta-G solvation = -34796.275496 eV Core-core repulsion = 30891.372391 eV Total energy + Delta-G solvation = -3904.903105 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.14848 -39.62158 -38.09767 -35.08154 -33.66454 -33.17702 -31.49687 -30.80096 -30.31940 -29.72775 -27.96129 -26.67310 -25.26682 -24.20692 -23.25945 -22.81865 -22.02289 -20.86268 -19.66155 -18.82579 -18.75110 -17.36038 -16.67092 -16.46197 -15.47193 -15.32100 -15.15465 -14.69568 -14.38433 -14.09396 -13.64947 -13.50436 -13.23752 -12.99844 -12.71097 -12.56764 -12.43943 -12.31059 -12.21781 -11.96793 -11.90859 -11.79982 -11.70315 -11.58683 -11.42794 -11.40561 -11.13691 -10.91442 -10.79816 -10.62285 -10.34704 -10.17449 -9.89278 -9.73826 -9.60791 -9.35058 -9.12390 -8.92147 -8.81842 -8.72546 -8.26460 -7.53351 -6.90697 -5.87416 -3.34088 1.77955 1.93448 3.19294 3.28391 3.30747 3.35387 4.05677 4.25650 4.46343 4.95213 5.11574 5.18142 5.24510 5.26936 5.30280 5.42604 5.45028 5.50468 5.55893 5.60111 5.68237 5.73051 5.82801 5.91743 5.94135 5.96178 6.05155 6.09587 6.14839 6.17770 6.23326 6.28671 6.29862 6.34587 6.38300 6.46072 6.47867 6.60821 6.67494 6.70719 6.80977 6.82920 6.89186 6.93785 6.96223 7.31647 7.44471 7.49477 7.60248 7.78107 8.11191 8.64578 8.65934 8.98074 9.25300 9.55997 10.26637 11.11298 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010444 B = 0.007436 C = 0.006214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.305995 B = 3764.310083 C = 4505.002692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.031 4.031 3 C -0.172 4.172 4 C 0.506 3.494 5 O -0.572 6.572 6 N -0.692 5.692 7 C 0.157 3.843 8 H 0.062 0.938 9 C -0.123 4.123 10 C -0.120 4.120 11 H 0.076 0.924 12 C -0.126 4.126 13 C 0.147 3.853 14 H 0.067 0.933 15 C -0.140 4.140 16 N -0.590 5.590 17 C -0.270 4.270 18 H 0.080 0.920 19 C 0.015 3.985 20 N -0.875 5.875 21 Si 0.884 3.116 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.289 1.289 25 C 0.126 3.874 26 C -0.096 4.096 27 C -0.066 4.066 28 C -0.177 4.177 29 C 0.096 3.904 30 N -0.472 5.472 31 C 0.138 3.862 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.441 0.559 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.256 0.744 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.122 0.878 49 H 0.123 0.877 50 H 0.144 0.856 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.491 -0.492 -1.974 4.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.035 4.035 3 C -0.229 4.229 4 C 0.291 3.709 5 O -0.454 6.454 6 N -0.363 5.363 7 C 0.051 3.949 8 H 0.081 0.919 9 C -0.161 4.161 10 C -0.139 4.139 11 H 0.094 0.906 12 C -0.165 4.165 13 C 0.040 3.960 14 H 0.085 0.915 15 C -0.180 4.180 16 N -0.317 5.317 17 C -0.397 4.397 18 H 0.097 0.903 19 C -0.187 4.187 20 N -0.518 5.518 21 Si 0.713 3.287 22 H -0.201 1.201 23 H -0.207 1.207 24 H -0.216 1.216 25 C 0.002 3.998 26 C -0.098 4.098 27 C -0.092 4.092 28 C -0.197 4.197 29 C -0.061 4.061 30 N -0.180 5.180 31 C -0.019 4.019 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.303 0.697 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.140 0.860 49 H 0.141 0.859 50 H 0.161 0.839 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.465 -1.738 -2.145 5.250 hybrid contribution -0.068 2.105 0.857 2.273 sum -4.533 0.367 -1.288 4.727 Atomic orbital electron populations 1.21690 0.92286 1.02540 1.01579 1.19542 0.96522 0.96170 0.91256 1.22438 1.06238 0.92839 1.01355 1.20311 0.81755 0.83486 0.85303 1.90592 1.58636 1.32142 1.64012 1.48202 1.19408 1.44374 1.24280 1.20626 0.95543 0.92377 0.86318 0.91947 1.22088 0.98041 0.96648 0.99365 1.22809 0.94391 0.99271 0.97457 0.90552 1.22959 0.98191 0.96714 0.98609 1.21655 0.93016 0.94416 0.86906 0.91527 1.22509 0.97443 0.99481 0.98613 1.45029 1.72214 1.04355 1.10122 1.19070 1.46255 0.83786 0.90594 0.90252 1.24868 1.01409 0.96551 0.95826 1.69966 1.51245 1.24116 1.06456 0.86583 0.78032 0.83917 0.80216 1.20086 1.20709 1.21644 1.22482 1.01978 0.81708 0.93621 1.20186 0.99690 0.96137 0.93786 1.21138 0.97535 0.98554 0.91956 1.21863 1.01636 0.97203 0.98989 1.22490 0.95326 0.93437 0.94823 1.67590 1.16624 1.34997 0.98773 1.22433 0.91231 0.91186 0.97012 0.92368 0.92251 0.91770 0.87272 0.92641 0.92528 0.69720 0.91577 0.92359 0.92216 0.92095 0.91805 0.92082 0.93322 0.91819 0.90504 0.86030 0.85905 0.83900 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 7.82 37.16 0.29 -1.68 16 2 C -0.03 -0.58 0.82 -156.81 -0.13 -0.70 16 3 C -0.17 -3.18 7.36 37.16 0.27 -2.90 16 4 C 0.51 10.30 3.92 -10.99 -0.04 10.25 16 5 O -0.57 -12.56 15.05 5.56 0.08 -12.48 16 6 N -0.69 -13.88 2.50 -53.80 -0.13 -14.02 16 7 C 0.16 2.87 2.69 -67.92 -0.18 2.69 16 8 H 0.06 1.14 7.92 -51.93 -0.41 0.73 16 9 C -0.12 -2.19 5.21 -26.21 -0.14 -2.32 16 10 C -0.12 -2.26 4.33 -87.92 -0.38 -2.64 16 11 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 12 C -0.13 -2.17 6.18 -24.30 -0.15 -2.32 16 13 C 0.15 2.74 4.30 -65.62 -0.28 2.46 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.14 -2.34 5.45 -26.28 -0.14 -2.49 16 16 N -0.59 -12.89 1.77 -161.38 -0.29 -13.18 16 17 C -0.27 -6.35 7.84 -15.06 -0.12 -6.46 16 18 H 0.08 1.87 7.84 -52.49 -0.41 1.46 16 19 C 0.01 0.35 3.84 -17.43 -0.07 0.28 16 20 N -0.88 -21.51 10.60 55.49 0.59 -20.93 16 21 Si 0.88 19.39 27.92 -169.99 -4.75 14.65 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.13 2.76 3.98 -2.83 -0.01 2.75 16 26 C -0.10 -1.83 4.70 -104.48 -0.49 -2.32 16 27 C -0.07 -1.14 9.04 -39.28 -0.36 -1.50 16 28 C -0.18 -2.87 10.11 -39.44 -0.40 -3.26 16 29 C 0.10 1.67 11.18 -17.55 -0.20 1.47 16 30 N -0.47 -9.47 10.36 -13.25 -0.14 -9.61 16 31 C 0.14 2.85 8.68 -17.55 -0.15 2.70 16 32 H 0.06 0.79 8.07 -51.93 -0.42 0.38 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.06 8.02 -51.93 -0.42 0.64 16 35 H 0.11 2.28 2.22 -51.93 -0.12 2.16 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.97 6.92 -51.93 -0.36 0.61 16 38 H 0.44 9.28 1.88 -44.41 -0.08 9.20 16 39 H 0.07 1.29 7.17 -51.93 -0.37 0.92 16 40 H 0.06 0.90 7.97 -51.93 -0.41 0.49 16 41 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 0.90 8.00 -51.93 -0.42 0.49 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.26 6.39 8.31 -40.82 -0.34 6.06 16 46 H 0.06 1.66 6.60 -51.93 -0.34 1.31 16 47 H 0.08 1.68 1.19 -58.31 -0.07 1.61 16 48 H 0.12 1.89 7.17 -52.48 -0.38 1.52 16 49 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 50 H 0.14 2.03 8.06 -52.48 -0.42 1.61 16 51 H 0.15 3.23 5.37 -52.48 -0.28 2.95 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -26.49 364.33 -9.22 -35.71 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: -7.41 Total: 20.36 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.67 Total: -6.00 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.03 Total: -57.73 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.08 Total: -12.48 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.75 Total: 14.65 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -26.49 -9.22 -35.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047100596.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.138 kcal (2) G-P(sol) polarization free energy of solvation -26.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds