Wall clock time and date at job start Wed Apr 1 2020 02:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47145 * 2 1 4 4 C 1.38676 * 120.41685 * 89.99847 * 3 2 1 5 5 C 1.38627 * 118.42124 * 179.72391 * 4 3 2 6 6 C 1.38222 * 119.16236 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.62171 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46935 * 125.00102 * 7 6 5 9 9 O 1.21280 * 120.00088 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99460 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99888 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.31773 * 50.54024 * 11 10 8 13 13 C 1.53031 * 109.32176 * 290.90226 * 11 10 8 14 14 C 1.53970 * 108.82375 * 295.13837 * 13 11 10 15 15 H 1.09001 * 112.99219 * 169.00436 * 14 13 11 16 16 C 1.55429 * 106.41582 * 293.82317 * 14 13 11 17 17 C 1.57414 * 99.36851 * 73.93189 * 16 14 13 18 18 H 1.09001 * 112.42431 * 162.49528 * 17 16 14 19 19 C 1.52982 * 109.32775 * 170.01039 * 11 10 8 20 20 N 1.47791 * 104.52726 * 40.23170 * 17 16 14 21 21 C 1.36930 * 125.86139 * 153.60623 * 20 17 16 22 22 H 1.08009 * 119.99828 * 0.02562 * 21 20 17 23 23 C 1.38812 * 120.00421 * 180.02562 * 21 20 17 24 24 N 1.31616 * 119.99584 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00159 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47128 * 89.99915 * 25 23 21 27 27 H 1.48504 * 109.47311 * 209.99993 * 25 23 21 28 28 H 1.48506 * 109.47445 * 330.00021 * 25 23 21 29 29 C 1.47083 * 108.28336 * 333.63570 * 20 17 16 30 30 N 1.31859 * 120.76301 * 359.97438 * 6 5 4 31 31 C 1.31893 * 121.72578 * 0.02562 * 30 6 5 32 32 H 1.08999 * 109.47432 * 300.00057 * 1 2 3 33 33 H 1.09000 * 109.46733 * 60.00432 * 1 2 3 34 34 H 1.09001 * 109.47125 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.47432 * 239.99943 * 2 1 3 36 36 H 1.08998 * 109.47030 * 120.00012 * 2 1 3 37 37 H 1.08000 * 120.78850 * 359.70678 * 4 3 2 38 38 H 1.07996 * 120.42027 * 179.97438 * 5 4 3 39 39 H 1.08998 * 109.46994 * 245.00127 * 7 6 5 40 40 H 1.08994 * 109.46676 * 4.99800 * 7 6 5 41 41 H 0.97001 * 120.00445 * 359.97438 * 10 8 7 42 42 H 1.08994 * 109.58098 * 54.94500 * 13 11 10 43 43 H 1.09003 * 109.57487 * 175.21076 * 13 11 10 44 44 H 1.09006 * 111.23116 * 191.15682 * 16 14 13 45 45 H 1.09001 * 111.23138 * 315.60121 * 16 14 13 46 46 H 1.08991 * 109.53569 * 185.06692 * 19 11 10 47 47 H 1.09004 * 109.52959 * 305.29054 * 19 11 10 48 48 H 0.97004 * 119.99895 * 179.97438 * 24 23 21 49 49 H 1.09005 * 109.97299 * 241.74690 * 29 20 17 50 50 H 1.08997 * 110.01252 * 120.48023 * 29 20 17 51 51 H 1.07999 * 119.61533 * 180.02562 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2663 2.0828 1.1959 5 6 2.7337 3.3870 1.1476 6 6 2.9489 3.9803 -0.0821 7 6 3.4562 5.3979 -0.1467 8 6 4.7111 5.4448 -0.9798 9 8 5.1504 4.4273 -1.4722 10 7 5.3456 6.6174 -1.1768 11 6 6.5659 6.6630 -1.9862 12 1 6.3886 6.1561 -2.9348 13 6 7.6971 5.9548 -1.2374 14 6 8.0145 6.7448 0.0455 15 1 8.6735 6.2053 0.7257 16 6 8.5945 8.1121 -0.4128 17 6 7.2692 8.7973 -0.9149 18 1 7.3694 9.8788 -1.0067 19 6 6.9392 8.1215 -2.2577 20 7 6.2498 8.4073 0.0815 21 6 5.1163 9.1120 0.3874 22 1 4.9055 10.0422 -0.1194 23 6 4.2381 8.6309 1.3488 24 7 4.4947 7.4971 1.9659 25 14 2.6914 9.5918 1.7654 26 1 1.5805 9.1476 0.8857 27 1 2.3259 9.3506 3.1844 28 1 2.9381 11.0414 1.5575 29 6 6.6620 7.1327 0.6888 30 7 2.7153 3.3203 -1.1995 31 6 2.2705 2.0786 -1.1916 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 2.0884 1.5939 2.1423 38 1 2.9264 3.9329 2.0593 39 1 2.6963 6.0356 -0.5982 40 1 3.6754 5.7514 0.8608 41 1 4.9944 7.4311 -0.7826 42 1 7.3851 4.9437 -0.9760 43 1 8.5832 5.9115 -1.8706 44 1 9.0277 8.6580 0.4254 45 1 9.3209 7.9837 -1.2153 46 1 7.7936 8.1594 -2.9334 47 1 6.0919 8.6363 -2.7107 48 1 3.8812 7.1610 2.6380 49 1 5.9174 6.3638 0.4823 50 1 6.7829 7.2542 1.7652 51 1 2.0912 1.5700 -2.1272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047148558.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:59 Heat of formation + Delta-G solvation = 64.084283 kcal Electronic energy + Delta-G solvation = -32145.725868 eV Core-core repulsion = 28240.114043 eV Total energy + Delta-G solvation = -3905.611825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.63361 -39.93823 -37.59923 -34.77014 -33.76652 -32.92663 -31.89953 -31.04667 -30.72980 -30.21926 -28.15729 -26.83423 -25.30931 -23.64280 -23.20562 -23.19328 -21.60936 -20.81938 -19.67585 -19.30561 -18.62836 -17.17436 -16.44593 -16.16014 -15.91519 -15.21213 -15.03722 -14.74718 -14.53322 -14.17376 -13.89218 -13.78684 -13.58651 -13.21094 -12.86595 -12.71338 -12.59221 -12.40602 -12.19292 -12.15241 -11.90867 -11.81968 -11.70733 -11.55494 -11.40644 -11.29664 -11.13757 -10.98564 -10.92659 -10.84373 -10.57274 -10.17560 -9.83280 -9.70716 -9.53090 -9.43080 -9.32500 -9.00251 -8.82311 -8.73499 -8.36173 -7.32911 -6.95715 -5.95834 -3.33361 1.43420 1.65693 3.25612 3.33521 3.34639 3.75471 4.05658 4.28413 4.44945 4.65912 4.87629 4.88145 5.13484 5.16915 5.19804 5.24073 5.29818 5.33016 5.47338 5.47856 5.51172 5.66364 5.76464 5.77145 5.83015 5.91328 5.96472 5.96971 6.02517 6.07659 6.10967 6.15652 6.20435 6.25393 6.31446 6.37121 6.42015 6.51635 6.54602 6.64247 6.72605 6.76634 6.89581 6.91360 6.96103 7.09789 7.45010 7.63935 7.70568 7.79242 8.04879 8.47041 8.88334 9.02256 9.50887 9.55338 10.24037 11.10397 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.004022 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.432214 B = 6960.444427 C = 8433.804580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.152 4.152 4 C -0.078 4.078 5 C -0.162 4.162 6 C 0.156 3.844 7 C -0.106 4.106 8 C 0.520 3.480 9 O -0.566 6.566 10 N -0.698 5.698 11 C 0.162 3.838 12 H 0.056 0.944 13 C -0.122 4.122 14 C -0.121 4.121 15 H 0.072 0.928 16 C -0.130 4.130 17 C 0.152 3.848 18 H 0.065 0.935 19 C -0.143 4.143 20 N -0.594 5.594 21 C -0.244 4.244 22 H 0.082 0.918 23 C -0.002 4.002 24 N -0.909 5.909 25 Si 0.905 3.095 26 H -0.285 1.285 27 H -0.288 1.288 28 H -0.280 1.280 29 C 0.153 3.847 30 N -0.455 5.455 31 C 0.100 3.900 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.094 0.906 40 H 0.142 0.858 41 H 0.437 0.563 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.256 0.744 49 H 0.083 0.917 50 H 0.036 0.964 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.860 -7.768 -2.827 8.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.154 4.154 4 C -0.104 4.104 5 C -0.182 4.182 6 C 0.019 3.981 7 C -0.146 4.146 8 C 0.305 3.695 9 O -0.446 6.446 10 N -0.366 5.366 11 C 0.056 3.944 12 H 0.074 0.926 13 C -0.161 4.161 14 C -0.140 4.140 15 H 0.090 0.910 16 C -0.168 4.168 17 C 0.045 3.955 18 H 0.083 0.917 19 C -0.183 4.183 20 N -0.320 5.320 21 C -0.371 4.371 22 H 0.100 0.900 23 C -0.199 4.199 24 N -0.556 5.556 25 Si 0.735 3.265 26 H -0.212 1.212 27 H -0.214 1.214 28 H -0.206 1.206 29 C 0.029 3.971 30 N -0.162 5.162 31 C -0.058 4.058 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.112 0.888 40 H 0.160 0.840 41 H 0.292 0.708 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.067 0.933 49 H 0.101 0.899 50 H 0.054 0.946 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.631 -7.973 -3.780 8.973 hybrid contribution -0.985 0.473 1.350 1.737 sum -2.616 -7.500 -2.430 8.306 Atomic orbital electron populations 1.21756 0.94929 1.01447 1.02237 1.20402 0.95913 0.92313 1.02756 1.20801 1.02591 0.97504 0.94512 1.21343 0.96973 0.94326 0.97770 1.22022 1.01104 0.95758 0.99287 1.20891 0.93376 0.95671 0.88211 1.20935 0.96410 0.91501 1.05726 1.20034 0.84929 0.83965 0.80524 1.90588 1.67942 1.34691 1.51375 1.47582 1.25192 1.12680 1.51119 1.20518 0.85397 0.95195 0.93262 0.92555 1.22057 0.97372 0.99901 0.96736 1.22828 0.99333 0.95282 0.96565 0.90993 1.23370 0.96679 0.97035 0.99757 1.21932 0.88619 0.96193 0.88792 0.91668 1.22540 1.00820 0.95514 0.99426 1.44913 1.21721 1.23097 1.42264 1.19187 0.95820 1.03793 1.18310 0.89971 1.24806 0.99167 0.97671 0.98279 1.69979 1.37241 1.20103 1.28281 0.86217 0.82905 0.79572 0.77830 1.21179 1.21397 1.20571 1.22045 0.91334 0.88688 0.95033 1.67516 1.09279 1.08255 1.31185 1.22549 0.95315 0.90946 0.96962 0.92660 0.92546 0.92543 0.90995 0.91191 0.85437 0.84585 0.88753 0.84020 0.70778 0.91238 0.92789 0.92302 0.92006 0.91606 0.92212 0.93310 0.89912 0.94627 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.89 37.16 0.37 -0.93 16 2 C -0.08 -0.76 6.09 -27.88 -0.17 -0.93 16 3 C -0.15 -2.08 5.15 -104.48 -0.54 -2.62 16 4 C -0.08 -1.11 9.86 -39.28 -0.39 -1.49 16 5 C -0.16 -2.70 9.71 -39.44 -0.38 -3.08 16 6 C 0.16 3.03 5.76 -82.58 -0.48 2.56 16 7 C -0.11 -2.18 6.07 -29.03 -0.18 -2.35 16 8 C 0.52 11.59 5.95 -10.99 -0.07 11.53 16 9 O -0.57 -13.75 14.04 5.56 0.08 -13.67 16 10 N -0.70 -14.92 2.78 -53.80 -0.15 -15.07 16 11 C 0.16 3.12 2.72 -67.92 -0.18 2.94 16 12 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 13 C -0.12 -2.28 5.13 -26.21 -0.13 -2.41 16 14 C -0.12 -2.30 4.27 -87.92 -0.38 -2.67 16 15 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 16 C -0.13 -2.22 6.31 -23.04 -0.15 -2.36 16 17 C 0.15 2.85 4.32 -64.34 -0.28 2.57 16 18 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 19 C -0.14 -2.45 5.45 -26.27 -0.14 -2.60 16 20 N -0.59 -13.12 1.77 -159.95 -0.28 -13.40 16 21 C -0.24 -5.78 8.61 -15.06 -0.13 -5.91 16 22 H 0.08 1.92 7.83 -52.48 -0.41 1.51 16 23 C 0.00 -0.05 5.22 -17.43 -0.09 -0.14 16 24 N -0.91 -22.07 8.19 55.49 0.45 -21.61 16 25 Si 0.91 19.47 29.55 -169.99 -5.02 14.45 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 29 C 0.15 3.43 3.90 -2.82 -0.01 3.42 16 30 N -0.45 -8.87 9.23 -9.47 -0.09 -8.96 16 31 C 0.10 1.60 10.86 -17.55 -0.19 1.41 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 36 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 37 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 38 H 0.14 2.11 7.95 -52.49 -0.42 1.69 16 39 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 40 H 0.14 3.03 5.46 -51.93 -0.28 2.74 16 41 H 0.44 9.78 3.70 -40.90 -0.15 9.63 16 42 H 0.07 1.46 6.76 -51.93 -0.35 1.11 16 43 H 0.05 0.88 7.98 -51.93 -0.41 0.47 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.91 7.75 -51.93 -0.40 0.51 16 46 H 0.07 0.96 8.00 -51.93 -0.42 0.54 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.26 6.10 8.30 -40.82 -0.34 5.76 16 49 H 0.08 1.97 3.29 -54.70 -0.18 1.79 16 50 H 0.04 0.91 7.40 -51.93 -0.38 0.52 16 51 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -27.75 382.06 -10.80 -38.55 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -8.03 Total: 17.03 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -3.51 Total: -3.07 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.07 Total: -59.04 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.08 Total: -13.67 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -27.75 -10.80 -38.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047148558.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.633 kcal (2) G-P(sol) polarization free energy of solvation -27.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds