Wall clock time and date at job start Wed Apr 1 2020 02:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.46677 * 2 1 4 4 C 1.38673 * 120.41916 * 89.99884 * 3 2 1 5 5 C 1.38634 * 118.41842 * 179.97438 * 4 3 2 6 6 C 1.38227 * 119.16086 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.61623 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46839 * 125.00104 * 7 6 5 9 9 O 1.21284 * 120.00295 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99666 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99877 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.32486 * 35.35132 * 11 10 8 13 13 C 1.53019 * 109.32526 * 154.99718 * 11 10 8 14 14 C 1.53976 * 108.83293 * 175.67605 * 13 11 10 15 15 H 1.08991 * 112.99873 * 168.09296 * 14 13 11 16 16 C 1.55432 * 106.40925 * 293.82462 * 14 13 11 17 17 C 1.55452 * 100.23438 * 73.19269 * 16 14 13 18 18 H 1.09004 * 113.04558 * 163.20983 * 17 16 14 19 19 C 1.52983 * 109.32168 * 275.88758 * 11 10 8 20 20 N 1.47788 * 104.12128 * 40.86371 * 17 16 14 21 21 C 1.36928 * 125.85465 * 153.44486 * 20 17 16 22 22 H 1.07999 * 120.00185 * 4.90281 * 21 20 17 23 23 C 1.38821 * 119.99741 * 184.90775 * 21 20 17 24 24 N 1.31613 * 119.99860 * 352.98342 * 23 21 20 25 25 Si 1.86801 * 119.99756 * 173.26455 * 23 21 20 26 26 H 1.48494 * 109.47012 * 274.72754 * 25 23 21 27 27 H 1.48501 * 109.47425 * 34.73180 * 25 23 21 28 28 H 1.48500 * 109.46921 * 154.73091 * 25 23 21 29 29 C 1.47083 * 108.28423 * 333.17913 * 20 17 16 30 30 N 1.31851 * 120.76273 * 0.25254 * 6 5 4 31 31 C 1.31884 * 121.72587 * 359.47934 * 30 6 5 32 32 H 1.09003 * 109.47332 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47582 * 300.00555 * 1 2 3 34 34 H 1.09000 * 109.47179 * 60.00859 * 1 2 3 35 35 H 1.08992 * 109.47559 * 239.99811 * 2 1 3 36 36 H 1.09000 * 109.46664 * 119.99248 * 2 1 3 37 37 H 1.07998 * 120.78935 * 359.97438 * 4 3 2 38 38 H 1.08001 * 120.41575 * 179.97438 * 5 4 3 39 39 H 1.08999 * 109.47140 * 5.00298 * 7 6 5 40 40 H 1.08995 * 109.47268 * 244.99974 * 7 6 5 41 41 H 0.96999 * 120.00075 * 359.97438 * 10 8 7 42 42 H 1.09005 * 109.58294 * 55.87191 * 13 11 10 43 43 H 1.09007 * 109.68703 * 295.54165 * 13 11 10 44 44 H 1.09005 * 111.23056 * 191.14819 * 16 14 13 45 45 H 1.09000 * 111.23485 * 315.59400 * 16 14 13 46 46 H 1.09010 * 109.53243 * 304.52332 * 19 11 10 47 47 H 1.09003 * 109.53961 * 64.67782 * 19 11 10 48 48 H 0.96999 * 119.99869 * 180.02562 * 24 23 21 49 49 H 1.09003 * 109.97680 * 120.72178 * 29 20 17 50 50 H 1.08997 * 109.97851 * 241.96303 * 29 20 17 51 51 H 1.08003 * 119.61962 * 180.26671 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2662 2.0829 1.1958 5 6 2.7284 3.3890 1.1474 6 6 2.9397 3.9835 -0.0824 7 6 3.4415 5.4031 -0.1470 8 6 4.6951 5.4552 -0.9817 9 8 5.1379 4.4396 -1.4752 10 7 5.3249 6.6303 -1.1790 11 6 6.5434 6.6811 -1.9910 12 1 6.4649 5.9601 -2.8047 13 6 6.7053 8.0867 -2.5737 14 6 8.0425 8.1586 -3.3338 15 1 8.1360 9.0547 -3.9471 16 6 9.1627 8.0054 -2.2672 17 6 9.0298 6.4910 -1.9427 18 1 9.9022 6.0865 -1.4294 19 6 7.7484 6.3250 -1.1183 20 7 8.8059 5.8583 -3.2594 21 6 9.1245 4.5695 -3.5945 22 1 9.5087 3.8954 -2.8433 23 6 8.9538 4.1294 -4.9000 24 7 8.3587 4.9032 -5.7828 25 14 9.5616 2.4358 -5.4016 26 1 10.9972 2.5150 -5.7730 27 1 9.3954 1.4936 -4.2658 28 1 8.7754 1.9522 -6.5649 29 6 8.1762 6.8486 -4.1460 30 7 2.7022 3.3249 -1.1996 31 6 2.2669 2.0799 -1.1916 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5137 -0.8901 35 1 1.8934 -0.5138 -0.8899 36 1 1.8932 -0.5137 0.8901 37 1 2.0924 1.5926 2.1423 38 1 2.9210 3.9350 2.0592 39 1 3.6607 5.7572 0.8603 40 1 2.6786 6.0380 -0.5973 41 1 4.9711 7.4425 -0.7841 42 1 6.7043 8.8192 -1.7665 43 1 5.8840 8.2971 -3.2588 44 1 10.1414 8.2389 -2.6864 45 1 8.9565 8.6155 -1.3878 46 1 7.7811 6.9883 -0.2538 47 1 7.6622 5.2918 -0.7818 48 1 8.2391 4.5955 -6.6949 49 1 8.8030 7.0160 -5.0220 50 1 7.1911 6.4990 -4.4548 51 1 2.0876 1.5711 -2.1272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047148559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:06 Heat of formation + Delta-G solvation = 20.873619 kcal Electronic energy + Delta-G solvation = -30578.470771 eV Core-core repulsion = 26670.985191 eV Total energy + Delta-G solvation = -3907.485580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.52311 -39.83706 -38.39648 -35.10457 -34.32827 -32.75564 -32.33004 -31.49358 -30.62589 -29.60845 -28.42976 -27.32486 -25.23054 -23.95276 -23.59800 -23.04478 -21.80748 -21.04339 -19.96038 -19.35061 -18.57246 -17.03712 -16.93023 -16.49492 -16.31862 -15.66293 -15.34292 -14.79307 -14.54055 -14.35582 -14.13828 -14.00425 -13.72911 -13.50575 -13.17571 -13.04892 -12.97263 -12.67695 -12.45069 -12.32335 -12.06784 -11.82596 -11.74701 -11.61022 -11.51860 -11.46368 -11.19211 -11.14924 -10.65322 -10.62229 -10.44114 -9.90968 -9.79620 -9.76471 -9.65750 -9.59273 -9.37925 -9.29291 -9.16227 -8.76510 -8.44716 -8.42177 -6.69939 -5.57952 -2.88682 1.06390 1.31526 3.13195 3.48390 3.51448 3.56292 3.58325 3.90139 4.22547 4.56127 4.63302 4.63718 4.76760 4.86897 5.05645 5.11546 5.15064 5.23125 5.30328 5.31269 5.34319 5.39192 5.49855 5.53982 5.63697 5.66893 5.68806 5.73729 5.81461 5.93360 5.95776 5.96803 6.05485 6.11513 6.15318 6.18544 6.20209 6.22626 6.29437 6.63329 6.68661 6.69409 6.78286 6.96203 6.99937 7.06301 7.19314 7.66948 7.72790 7.94610 7.98718 8.11643 8.38545 8.76593 9.35836 9.96496 10.62935 11.54515 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010603 B = 0.003238 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.099769 B = 8645.375909 C =10567.691964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.141 4.141 4 C -0.077 4.077 5 C -0.166 4.166 6 C 0.142 3.858 7 C -0.092 4.092 8 C 0.509 3.491 9 O -0.504 6.504 10 N -0.732 5.732 11 C 0.148 3.852 12 H 0.113 0.887 13 C -0.111 4.111 14 C -0.119 4.119 15 H 0.081 0.919 16 C -0.126 4.126 17 C 0.157 3.843 18 H 0.064 0.936 19 C -0.135 4.135 20 N -0.594 5.594 21 C -0.220 4.220 22 H 0.075 0.925 23 C -0.006 4.006 24 N -0.921 5.921 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.283 1.283 28 H -0.292 1.292 29 C 0.180 3.820 30 N -0.449 5.449 31 C 0.109 3.891 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.388 0.612 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.042 0.958 47 H 0.057 0.943 48 H 0.250 0.750 49 H 0.045 0.955 50 H 0.044 0.956 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.518 2.225 15.701 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.143 4.143 4 C -0.102 4.102 5 C -0.186 4.186 6 C 0.003 3.997 7 C -0.133 4.133 8 C 0.293 3.707 9 O -0.377 6.377 10 N -0.384 5.384 11 C 0.045 3.955 12 H 0.131 0.869 13 C -0.149 4.149 14 C -0.139 4.139 15 H 0.100 0.900 16 C -0.165 4.165 17 C 0.048 3.952 18 H 0.082 0.918 19 C -0.176 4.176 20 N -0.319 5.319 21 C -0.348 4.348 22 H 0.093 0.907 23 C -0.202 4.202 24 N -0.569 5.569 25 Si 0.738 3.262 26 H -0.218 1.218 27 H -0.208 1.208 28 H -0.218 1.218 29 C 0.055 3.945 30 N -0.157 5.157 31 C -0.048 4.048 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.221 0.779 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.062 0.938 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.070 1.717 14.305 20.138 hybrid contribution -0.076 -0.921 0.773 1.204 sum -14.146 0.796 15.078 20.690 Atomic orbital electron populations 1.21753 0.94667 1.01758 1.02172 1.20458 0.96077 0.92005 1.03244 1.20905 1.01376 0.97688 0.94377 1.21359 0.96719 0.94173 0.97995 1.21877 1.02107 0.96109 0.98545 1.20558 0.95198 0.95235 0.88664 1.20622 0.97180 0.93642 1.01878 1.20136 0.84821 0.84108 0.81636 1.90837 1.65579 1.33463 1.47812 1.46192 1.28617 1.09198 1.54360 1.21144 0.82072 0.98178 0.94069 0.86872 1.21957 0.98419 0.95610 0.98944 1.22837 0.93328 1.00509 0.97226 0.90047 1.23006 0.98487 0.97247 0.97753 1.21442 0.94161 0.91157 0.88414 0.91841 1.22508 0.97051 1.00608 0.97478 1.44594 1.70792 1.09547 1.06937 1.18982 1.36134 0.86232 0.93498 0.90712 1.24740 1.01072 0.98183 0.96170 1.69947 1.46904 1.36418 1.03592 0.86199 0.78097 0.84026 0.77911 1.21759 1.20848 1.21831 1.21308 0.97811 0.83976 0.91391 1.67469 1.08828 1.08686 1.30685 1.22649 0.94340 0.90436 0.97420 0.92287 0.92725 0.92437 0.90566 0.90954 0.85138 0.84996 0.87839 0.87460 0.77908 0.92899 0.92209 0.91880 0.92322 0.93914 0.92436 0.93939 0.93664 0.93801 0.83037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.08 -0.68 6.09 -27.88 -0.17 -0.85 16 3 C -0.14 -1.61 5.15 -104.48 -0.54 -2.15 16 4 C -0.08 -0.81 9.86 -39.27 -0.39 -1.20 16 5 C -0.17 -1.89 9.71 -39.44 -0.38 -2.27 16 6 C 0.14 2.01 5.76 -82.59 -0.48 1.54 16 7 C -0.09 -1.12 6.10 -29.03 -0.18 -1.29 16 8 C 0.51 8.74 7.71 -10.99 -0.08 8.66 16 9 O -0.50 -11.75 15.01 5.55 0.08 -11.66 16 10 N -0.73 -11.17 5.07 -53.80 -0.27 -11.45 16 11 C 0.15 2.80 2.07 -67.93 -0.14 2.66 16 12 H 0.11 2.85 5.39 -51.93 -0.28 2.57 16 13 C -0.11 -1.80 4.95 -26.21 -0.13 -1.93 16 14 C -0.12 -2.19 4.33 -87.92 -0.38 -2.57 16 15 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 16 C -0.13 -2.21 6.20 -24.14 -0.15 -2.36 16 17 C 0.16 3.28 4.26 -65.78 -0.28 3.00 16 18 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 19 C -0.14 -2.60 5.26 -26.60 -0.14 -2.74 16 20 N -0.59 -15.33 2.43 -161.55 -0.39 -15.73 16 21 C -0.22 -6.41 10.28 -15.06 -0.15 -6.56 16 22 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 23 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 24 N -0.92 -28.14 10.40 55.49 0.58 -27.56 16 25 Si 0.91 23.57 29.56 -169.99 -5.02 18.54 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 29 C 0.18 4.40 4.11 -2.82 -0.01 4.38 16 30 N -0.45 -7.50 9.24 -9.47 -0.09 -7.58 16 31 C 0.11 1.54 10.86 -17.55 -0.19 1.35 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 36 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.13 1.09 7.95 -52.49 -0.42 0.67 16 39 H 0.10 0.86 7.87 -51.93 -0.41 0.46 16 40 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.39 4.27 8.60 -40.82 -0.35 3.92 16 42 H 0.05 0.71 7.97 -51.93 -0.41 0.29 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.06 0.86 7.75 -51.93 -0.40 0.46 16 46 H 0.04 0.69 8.00 -51.92 -0.42 0.28 16 47 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 48 H 0.25 7.48 8.31 -40.82 -0.34 7.15 16 49 H 0.05 1.24 7.31 -51.93 -0.38 0.86 16 50 H 0.04 1.21 6.26 -51.93 -0.33 0.88 16 51 H 0.15 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 399.95 15.07 6.03 6.03 Total: -1.00 -36.73 399.95 -11.04 -47.78 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -8.43 Total: 4.93 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -3.52 Total: -3.29 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -0.18 Total: -62.32 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.02 Total: 18.54 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.73 -11.04 -47.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047148559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.649 kcal (2) G-P(sol) polarization free energy of solvation -36.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds