Wall clock time and date at job start Wed Apr 1 2020 03:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47539 * 2 1 4 4 C 1.52998 * 109.47226 * 239.99908 * 2 1 3 5 5 C 1.50699 * 109.46963 * 119.99893 * 2 1 3 6 6 C 1.38625 * 120.32191 * 179.72049 * 5 2 1 7 7 C 1.38597 * 118.48589 * 179.73630 * 6 5 2 8 8 C 1.39307 * 119.05738 * 0.54094 * 7 6 5 9 9 C 1.48171 * 119.72247 * 179.74858 * 8 7 6 10 10 O 1.21519 * 119.99561 * 359.97438 * 9 8 7 11 11 N 1.34768 * 119.99949 * 179.97438 * 9 8 7 12 12 C 1.46675 * 125.33655 * 180.02562 * 11 9 8 13 13 C 1.53726 * 107.94142 * 180.54785 * 12 11 9 14 14 H 1.08999 * 112.56658 * 139.72317 * 13 12 11 15 15 C 1.53697 * 109.33899 * 266.24993 * 13 12 11 16 16 N 1.46639 * 108.00826 * 127.55518 * 15 13 12 17 17 C 1.36944 * 125.32948 * 180.81522 * 16 15 13 18 18 H 1.07996 * 119.99995 * 174.01672 * 17 16 15 19 19 C 1.38809 * 119.99585 * 354.01099 * 17 16 15 20 20 N 1.31621 * 120.00423 * 6.95061 * 19 17 16 21 21 Si 1.86806 * 119.99825 * 186.93998 * 19 17 16 22 22 H 1.48493 * 109.47073 * 94.98988 * 21 19 17 23 23 H 1.48496 * 109.47164 * 214.99187 * 21 19 17 24 24 H 1.48503 * 109.46934 * 334.99077 * 21 19 17 25 25 C 1.46748 * 109.34200 * 0.84105 * 16 15 13 26 26 C 1.53934 * 106.71920 * 341.65509 * 25 16 15 27 27 H 1.08995 * 113.00780 * 150.83631 * 26 25 16 28 28 C 1.46775 * 125.33863 * 359.69159 * 11 9 8 29 29 N 1.32714 * 120.55527 * 359.72115 * 8 7 6 30 30 C 1.31529 * 121.64422 * 0.02562 * 29 8 7 31 31 H 1.08996 * 109.47269 * 300.00121 * 1 2 3 32 32 H 1.09007 * 109.46979 * 59.99905 * 1 2 3 33 33 H 1.08993 * 109.47368 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47382 * 179.97438 * 3 2 1 35 35 H 1.09007 * 109.47062 * 300.00044 * 3 2 1 36 36 H 1.09004 * 109.47226 * 59.99676 * 3 2 1 37 37 H 1.09001 * 109.47602 * 300.00463 * 4 2 1 38 38 H 1.09007 * 109.47452 * 59.99930 * 4 2 1 39 39 H 1.08996 * 109.47279 * 180.02562 * 4 2 1 40 40 H 1.08002 * 120.76290 * 359.97438 * 6 5 2 41 41 H 1.08007 * 120.46843 * 180.28586 * 7 6 5 42 42 H 1.08999 * 109.76841 * 300.16143 * 12 11 9 43 43 H 1.08996 * 109.77540 * 60.92774 * 12 11 9 44 44 H 1.08996 * 109.76141 * 247.19897 * 15 13 12 45 45 H 1.09003 * 109.76103 * 7.91468 * 15 13 12 46 46 H 0.96999 * 120.00063 * 179.97438 * 20 19 17 47 47 H 1.09000 * 110.00677 * 222.34078 * 25 16 15 48 48 H 1.08997 * 110.01194 * 100.97360 * 25 16 15 49 49 H 1.08997 * 110.03204 * 280.77112 * 28 11 9 50 50 H 1.08999 * 110.02683 * 42.19855 * 28 11 9 51 51 H 1.07996 * 119.54792 * 180.02562 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 3.3937 -0.8459 1.4536 7 6 3.8136 -1.5013 2.6004 8 6 2.8581 -2.0082 3.4783 9 6 3.2906 -2.7163 4.7059 10 8 4.4745 -2.8532 4.9431 11 7 2.3709 -3.2084 5.5593 12 6 2.6667 -3.9258 6.8040 13 6 1.3298 -4.3170 7.4542 14 1 1.3513 -5.3181 7.8849 15 6 0.9201 -3.2352 8.4661 16 7 -0.4499 -2.8166 8.1525 17 6 -1.1579 -1.8561 8.8245 18 1 -2.1267 -1.5463 8.4614 19 6 -0.6304 -1.2808 9.9723 20 7 0.6034 -1.5559 10.3391 21 14 -1.6715 -0.1160 10.9965 22 1 -2.3192 -0.8707 12.0992 23 1 -0.8076 0.9490 11.5662 24 1 -2.7153 0.4996 10.1381 25 6 -0.9435 -3.5884 7.0062 26 6 0.2927 -4.1796 6.3049 27 1 0.0850 -5.1217 5.7978 28 6 0.9164 -3.1046 5.3924 29 7 1.5637 -1.8617 3.2246 30 6 1.1378 -1.2399 2.1467 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9564 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6767 -0.2075 -2.1393 39 1 3.1300 -0.7217 -1.2490 40 1 4.1110 -0.4466 0.7518 41 1 4.8667 -1.6209 2.8083 42 1 3.2460 -4.8224 6.5840 43 1 3.2290 -3.2791 7.4776 44 1 0.9589 -3.6420 9.4766 45 1 1.5936 -2.3819 8.3863 46 1 0.9721 -1.1536 11.1410 47 1 -1.4839 -2.9348 6.3214 48 1 -1.5965 -4.3906 7.3500 49 1 0.5761 -2.1133 5.6918 50 1 0.6453 -3.2951 4.3540 51 1 0.0765 -1.1396 1.9740 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048824587.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:21 Heat of formation + Delta-G solvation = 31.565083 kcal Electronic energy + Delta-G solvation = -30718.135872 eV Core-core repulsion = 26811.113908 eV Total energy + Delta-G solvation = -3907.021964 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.98453 -39.77461 -38.15859 -36.97168 -34.89457 -32.60953 -32.13793 -31.04098 -29.89032 -29.32375 -27.92106 -27.63277 -25.90388 -25.35688 -24.47297 -23.34499 -22.66859 -20.20022 -19.97004 -19.61326 -19.19271 -17.43672 -16.93922 -16.70043 -15.97377 -15.78754 -15.29733 -14.94055 -14.71081 -14.59344 -14.26329 -14.14576 -13.69386 -13.60269 -13.48579 -13.26266 -12.94122 -12.77361 -12.57759 -12.49636 -12.39195 -12.05747 -11.96096 -11.83159 -11.49049 -11.39436 -11.37765 -11.33584 -11.10334 -10.85080 -10.78469 -10.35866 -10.12124 -10.04345 -9.97781 -9.94160 -9.81102 -9.57043 -9.21857 -9.12962 -8.54824 -8.18761 -6.78580 -5.70244 -3.02515 0.58302 1.10581 2.84086 3.20413 3.41728 3.46733 3.49037 3.83601 4.04663 4.26773 4.33797 4.52188 4.60175 4.66355 4.69875 4.83352 4.97070 4.99354 5.14356 5.20001 5.23702 5.29756 5.38748 5.41804 5.48555 5.50220 5.53487 5.60304 5.61441 5.67407 5.71533 5.77860 5.80260 5.87846 5.91517 5.92711 6.04976 6.07615 6.18963 6.30777 6.39843 6.44634 6.54909 6.66838 6.71982 6.73563 6.92202 7.57972 7.63971 7.67175 7.83188 7.85470 8.30089 8.36196 9.25009 9.86075 10.50708 11.41684 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012290 B = 0.002985 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.801406 B = 9377.176547 C =10442.605379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.026 4.026 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.106 4.106 6 C -0.081 4.081 7 C -0.110 4.110 8 C 0.084 3.916 9 C 0.577 3.423 10 O -0.546 6.546 11 N -0.584 5.584 12 C 0.119 3.881 13 C -0.124 4.124 14 H 0.090 0.910 15 C 0.185 3.815 16 N -0.602 5.602 17 C -0.229 4.229 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.147 3.853 26 C -0.117 4.117 27 H 0.087 0.913 28 C 0.122 3.878 29 N -0.444 5.444 30 C 0.094 3.906 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.252 0.748 47 H 0.038 0.962 48 H 0.019 0.981 49 H 0.078 0.922 50 H 0.089 0.911 51 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.683 -0.007 -23.466 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 C -0.197 4.197 4 C -0.196 4.196 5 C -0.109 4.109 6 C -0.106 4.106 7 C -0.131 4.131 8 C -0.054 4.054 9 C 0.364 3.636 10 O -0.425 6.425 11 N -0.314 5.314 12 C -0.004 4.004 13 C -0.143 4.143 14 H 0.108 0.892 15 C 0.060 3.940 16 N -0.328 5.328 17 C -0.357 4.357 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.566 5.566 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.219 1.219 24 H -0.207 1.207 25 C 0.020 3.980 26 C -0.137 4.137 27 H 0.105 0.895 28 C 0.000 4.000 29 N -0.154 5.154 30 C -0.065 4.065 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.156 0.844 41 H 0.164 0.836 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.036 0.964 49 H 0.096 0.904 50 H 0.107 0.893 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.805 -0.269 -22.553 22.728 hybrid contribution 0.088 1.027 0.107 1.036 sum 2.893 0.758 -22.446 22.644 Atomic orbital electron populations 1.22002 0.93613 1.02438 1.02577 1.19493 0.96158 0.95098 0.91975 1.21912 1.01185 0.94308 1.02331 1.21903 1.01172 1.00418 0.96126 1.21058 0.94212 0.98359 0.97222 1.21394 0.95446 0.97119 0.96673 1.22078 1.01575 0.96030 0.93407 1.21143 0.89553 0.98921 0.95791 1.17486 0.84773 0.79190 0.82161 1.90757 1.16225 1.59813 1.75698 1.48094 1.07800 1.53754 1.21793 1.21900 0.97694 0.95881 0.84880 1.23151 0.92689 1.01266 0.97234 0.89153 1.21106 0.86247 0.92604 0.94032 1.44205 1.12326 1.42725 1.33580 1.19033 0.99900 1.12688 1.04065 0.90403 1.24815 0.96626 1.00530 0.98338 1.69976 1.13196 1.47448 1.26000 0.86131 0.79240 0.80055 0.80546 1.21642 1.21850 1.20656 1.21142 0.93092 0.94039 0.89679 1.23060 0.97019 0.97841 0.95773 0.89457 1.22350 0.77821 0.99717 1.00139 1.67972 1.15946 1.12816 1.18697 1.22958 1.00654 0.93753 0.89103 0.91771 0.91930 0.91912 0.92379 0.91984 0.92185 0.92327 0.91994 0.92389 0.84439 0.83557 0.92147 0.90735 0.93495 0.93542 0.93761 0.94436 0.96352 0.90395 0.89302 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 7.14 37.16 0.27 -0.65 16 2 C -0.03 -0.18 0.86 -155.66 -0.13 -0.31 16 3 C -0.14 -0.90 8.29 37.16 0.31 -0.59 16 4 C -0.14 -0.81 8.29 37.16 0.31 -0.51 16 5 C -0.11 -1.00 4.77 -104.36 -0.50 -1.50 16 6 C -0.08 -0.79 8.84 -39.31 -0.35 -1.13 16 7 C -0.11 -1.39 9.63 -39.05 -0.38 -1.77 16 8 C 0.08 1.30 6.72 -83.01 -0.56 0.74 16 9 C 0.58 10.59 7.83 -12.18 -0.10 10.50 16 10 O -0.55 -11.12 16.63 5.35 0.09 -11.03 16 11 N -0.58 -10.71 3.31 -173.14 -0.57 -11.29 16 12 C 0.12 2.17 6.23 -3.57 -0.02 2.15 16 13 C -0.12 -2.31 4.02 -88.60 -0.36 -2.66 16 14 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 15 C 0.18 4.47 4.76 -3.60 -0.02 4.45 16 16 N -0.60 -15.18 3.37 -171.93 -0.58 -15.76 16 17 C -0.23 -6.34 10.24 -15.06 -0.15 -6.50 16 18 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 19 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 20 N -0.92 -27.16 10.30 55.49 0.57 -26.58 16 21 Si 0.91 22.23 29.56 -169.99 -5.02 17.20 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.15 2.97 6.37 -3.42 -0.02 2.95 16 26 C -0.12 -2.01 4.19 -88.23 -0.37 -2.38 16 27 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 28 C 0.12 2.13 4.97 -3.27 -0.02 2.11 16 29 N -0.44 -6.39 6.67 -9.80 -0.07 -6.46 16 30 C 0.09 1.06 10.15 -17.56 -0.18 0.88 16 31 H 0.06 0.42 7.53 -51.93 -0.39 0.03 16 32 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 33 H 0.06 0.37 7.53 -51.93 -0.39 -0.02 16 34 H 0.06 0.35 7.46 -51.93 -0.39 -0.03 16 35 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 39 H 0.06 0.32 7.43 -51.93 -0.39 -0.06 16 40 H 0.14 0.97 7.24 -52.49 -0.38 0.59 16 41 H 0.15 1.77 7.64 -52.48 -0.40 1.37 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 1.49 7.44 -51.93 -0.39 1.10 16 44 H 0.05 1.26 7.32 -51.93 -0.38 0.88 16 45 H 0.05 1.27 6.67 -51.93 -0.35 0.93 16 46 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.04 0.74 7.95 -51.93 -0.41 0.32 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 1.59 7.72 -51.93 -0.40 1.19 16 50 H 0.09 1.40 6.18 -51.93 -0.32 1.08 16 51 H 0.16 1.49 5.91 -52.49 -0.31 1.18 16 LS Contribution 393.35 15.07 5.93 5.93 Total: -1.00 -32.72 393.35 -10.26 -42.97 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -8.24 Total: -0.47 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -2.36 Total: 5.48 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.65 Total: -60.08 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.72 -10.26 -42.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048824587.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.538 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds