Wall clock time and date at job start Wed Apr 1 2020 03:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47450 * 2 1 4 4 C 1.52997 * 109.47344 * 120.00336 * 2 1 3 5 5 H 1.09001 * 109.46742 * 295.52089 * 4 2 1 6 6 C 1.50691 * 109.47432 * 175.51302 * 4 2 1 7 7 O 1.21274 * 120.00185 * 332.72869 * 6 4 2 8 8 N 1.34786 * 119.99814 * 152.72522 * 6 4 2 9 9 C 1.46744 * 125.32938 * 354.17117 * 8 6 4 10 10 C 1.54095 * 106.63156 * 161.58607 * 9 8 6 11 11 H 1.09000 * 113.49538 * 151.37391 * 10 9 8 12 12 C 1.53964 * 109.44464 * 278.63896 * 10 9 8 13 13 N 1.46775 * 106.62809 * 138.18132 * 12 10 9 14 14 C 1.36938 * 125.34150 * 161.51848 * 13 12 10 15 15 H 1.07989 * 119.99882 * 359.97438 * 14 13 12 16 16 C 1.38816 * 119.99827 * 179.97438 * 14 13 12 17 17 N 1.31617 * 120.00179 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99995 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46765 * 59.99788 * 18 16 14 20 20 H 1.48497 * 109.47178 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47164 * 300.00409 * 18 16 14 22 22 C 1.46674 * 109.32133 * 341.48176 * 13 12 10 23 23 C 1.53730 * 107.94235 * 0.54656 * 22 13 12 24 24 H 1.08994 * 113.05901 * 139.99814 * 23 22 13 25 25 C 1.46639 * 125.32634 * 174.47706 * 8 6 4 26 26 C 1.50703 * 109.46966 * 55.51194 * 4 2 1 27 27 C 1.38656 * 120.79017 * 240.00209 * 26 4 2 28 28 C 1.38203 * 119.16069 * 180.02562 * 27 26 4 29 29 N 1.31874 * 120.76516 * 0.25891 * 28 27 26 30 30 C 1.31867 * 121.72585 * 359.47094 * 29 28 27 31 31 C 1.38213 * 120.76350 * 0.52747 * 30 29 28 32 32 H 1.09005 * 109.47130 * 59.99263 * 1 2 3 33 33 H 1.08996 * 109.47596 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47051 * 300.00085 * 1 2 3 35 35 H 1.09004 * 109.47051 * 239.99915 * 2 1 3 36 36 H 1.08996 * 109.47457 * 185.17374 * 3 2 1 37 37 H 1.09004 * 109.47329 * 305.17586 * 3 2 1 38 38 H 1.09006 * 109.47093 * 65.17461 * 3 2 1 39 39 H 1.09001 * 110.00954 * 281.01276 * 9 8 6 40 40 H 1.08999 * 110.00931 * 42.38113 * 9 8 6 41 41 H 1.09004 * 110.03209 * 257.46771 * 12 10 9 42 42 H 1.09000 * 110.02793 * 18.88866 * 12 10 9 43 43 H 0.96996 * 119.99843 * 179.97438 * 17 16 14 44 44 H 1.09004 * 109.77217 * 240.92562 * 22 13 12 45 45 H 1.09003 * 109.77348 * 120.16849 * 22 13 12 46 46 H 1.08994 * 109.76464 * 300.44230 * 25 8 6 47 47 H 1.09000 * 109.75848 * 61.16342 * 25 8 6 48 48 H 1.07993 * 120.41699 * 0.04757 * 27 26 4 49 49 H 1.07997 * 119.61646 * 179.97438 * 28 27 26 50 50 H 1.07999 * 119.61932 * 180.27283 * 30 29 28 51 51 H 1.07998 * 120.41727 * 179.71691 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7437 -0.1632 2.1373 6 6 3.5428 -0.8183 1.1949 7 8 4.1112 -0.8335 0.1237 8 7 4.2553 -0.8881 2.3369 9 6 3.7038 -0.7578 3.6905 10 6 4.7486 -1.3565 4.6519 11 1 4.7282 -0.9123 5.6472 12 6 4.6060 -2.8893 4.6739 13 7 5.9673 -3.4380 4.6610 14 6 6.3112 -4.7121 5.0267 15 1 5.5502 -5.4027 5.3583 16 6 7.6382 -5.1158 4.9709 17 7 8.5659 -4.2738 4.5672 18 14 8.1076 -6.8535 5.4704 19 1 7.3996 -7.8268 4.6005 20 1 9.5744 -7.0320 5.3223 21 1 7.7219 -7.0830 6.8859 22 6 6.9013 -2.4080 4.1943 23 6 6.0940 -1.1316 3.9072 24 1 6.6047 -0.2228 4.2251 25 6 5.7039 -1.0997 2.4209 26 6 1.4490 -2.1064 1.3059 27 6 0.6621 -2.4990 2.3780 28 6 0.1375 -3.7774 2.3958 29 7 0.3820 -4.6207 1.4118 30 6 1.1214 -4.2801 0.3743 31 6 1.6795 -3.0187 0.2876 32 1 -0.3634 0.5140 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 3.1260 1.4438 -0.0927 37 1 1.6030 1.9824 -0.8400 38 1 1.7544 1.9288 0.9328 39 1 3.5363 0.2934 3.9254 40 1 2.7678 -1.3111 3.7667 41 1 4.0857 -3.2030 5.5790 42 1 4.0595 -3.2260 3.7930 43 1 9.4931 -4.5559 4.5286 44 1 7.3959 -2.7443 3.2830 45 1 7.6452 -2.2080 4.9655 46 1 5.9658 -2.0475 1.9507 47 1 6.2252 -0.2836 1.9206 48 1 0.4615 -1.8142 3.1886 49 1 -0.4760 -4.0911 3.2274 50 1 1.2962 -4.9965 -0.4147 51 1 2.2879 -2.7472 -0.5624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049006282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:05 Heat of formation + Delta-G solvation = 22.214851 kcal Electronic energy + Delta-G solvation = -31738.906578 eV Core-core repulsion = 27831.479158 eV Total energy + Delta-G solvation = -3907.427420 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.00812 -39.85374 -38.52935 -36.17605 -35.02455 -32.75998 -32.19083 -31.26487 -30.37539 -29.70390 -28.13885 -27.28478 -25.54436 -25.38713 -23.64011 -23.13216 -22.50593 -20.61542 -20.21407 -19.43673 -18.97894 -17.45275 -17.10943 -16.66309 -16.07235 -15.83658 -15.66230 -15.47805 -14.74634 -14.54290 -14.45915 -13.90915 -13.72596 -13.70794 -13.66354 -13.27617 -13.22716 -12.90940 -12.57474 -12.33947 -12.25171 -12.11157 -11.82595 -11.76092 -11.73667 -11.49455 -11.38469 -11.16334 -10.92771 -10.84444 -10.80293 -10.39043 -10.16242 -10.08549 -10.02978 -9.93826 -9.68606 -9.53032 -9.32946 -9.19817 -8.62704 -8.41025 -6.85691 -5.74107 -3.07615 1.08041 1.12450 2.66659 3.09957 3.40056 3.44589 3.45556 3.74745 4.32979 4.36457 4.42557 4.47091 4.55042 4.70668 4.74876 4.86217 4.96630 5.00755 5.07330 5.14586 5.20159 5.25371 5.41127 5.42198 5.43175 5.49671 5.52583 5.57877 5.63740 5.66255 5.72041 5.73323 5.74201 5.87025 5.89910 5.91878 6.08014 6.09562 6.11821 6.22414 6.23980 6.30442 6.49228 6.57486 6.62546 6.65871 6.80223 7.50554 7.53531 7.67055 7.78030 7.92636 8.23752 8.24258 9.20261 9.80539 10.44071 11.37488 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012564 B = 0.003707 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.086962 B = 7551.662313 C = 8782.737801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.149 4.149 4 C -0.061 4.061 5 H 0.099 0.901 6 C 0.537 3.463 7 O -0.537 6.537 8 N -0.605 5.605 9 C 0.108 3.892 10 C -0.109 4.109 11 H 0.099 0.901 12 C 0.147 3.853 13 N -0.601 5.601 14 C -0.230 4.230 15 H 0.077 0.923 16 C -0.006 4.006 17 N -0.922 5.922 18 Si 0.912 3.088 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.187 3.813 23 C -0.122 4.122 24 H 0.088 0.912 25 C 0.119 3.881 26 C -0.024 4.024 27 C -0.166 4.166 28 C 0.102 3.898 29 N -0.485 5.485 30 C 0.103 3.897 31 C -0.158 4.158 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.015 0.985 43 H 0.253 0.747 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.074 0.926 47 H 0.060 0.940 48 H 0.134 0.866 49 H 0.156 0.844 50 H 0.155 0.845 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.919 11.752 -5.364 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 C -0.206 4.206 4 C -0.082 4.082 5 H 0.117 0.883 6 C 0.325 3.675 7 O -0.415 6.415 8 N -0.337 5.337 9 C -0.015 4.015 10 C -0.129 4.129 11 H 0.117 0.883 12 C 0.020 3.980 13 N -0.327 5.327 14 C -0.359 4.359 15 H 0.095 0.905 16 C -0.202 4.202 17 N -0.570 5.570 18 Si 0.742 3.258 19 H -0.212 1.212 20 H -0.215 1.215 21 H -0.211 1.211 22 C 0.062 3.938 23 C -0.142 4.142 24 H 0.107 0.893 25 C -0.003 4.003 26 C -0.033 4.033 27 C -0.185 4.185 28 C -0.055 4.055 29 N -0.194 5.194 30 C -0.054 4.054 31 C -0.178 4.178 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.052 0.948 42 H 0.033 0.967 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.079 0.921 48 H 0.152 0.848 49 H 0.173 0.827 50 H 0.173 0.827 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.785 10.764 -5.961 20.812 hybrid contribution 0.768 -0.085 0.393 0.867 sum -16.017 10.679 -5.568 20.039 Atomic orbital electron populations 1.21860 0.94541 1.01991 1.01913 1.20983 0.95599 0.96284 0.96577 1.21863 1.02031 0.95069 1.01653 1.20442 0.92149 0.93900 1.01752 0.88329 1.19849 0.88383 0.76419 0.82858 1.90681 1.71929 1.50461 1.28388 1.48254 1.09236 1.70576 1.05659 1.22021 0.97651 0.99962 0.81915 1.22957 0.93980 0.98039 0.97922 0.88273 1.21208 0.89264 0.89524 0.97956 1.44194 1.00647 1.10250 1.77650 1.18987 0.92456 0.86848 1.37564 0.90535 1.24784 0.95723 0.98250 1.01447 1.69933 1.00446 1.33853 1.52738 0.86196 0.77294 0.83940 0.78332 1.21150 1.21540 1.21129 1.21035 0.90220 0.83089 0.99406 1.23144 0.96896 1.01633 0.92557 0.89324 1.21983 0.79263 1.01660 0.97382 1.19741 0.95174 0.94254 0.94117 1.22015 0.99447 0.98381 0.98690 1.22725 0.96850 0.89575 0.96394 1.67668 1.14242 1.35877 1.01627 1.22746 0.92592 0.94476 0.95569 1.22103 1.00891 0.94733 1.00095 0.92273 0.92536 0.92586 0.89570 0.91937 0.92228 0.92854 0.91782 0.91072 0.94792 0.96718 0.93634 0.93320 0.93311 0.90740 0.92131 0.84794 0.82715 0.82747 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.88 37.16 0.33 -0.86 16 2 C -0.08 -0.76 1.97 -90.63 -0.18 -0.94 16 3 C -0.15 -1.42 8.90 37.16 0.33 -1.09 16 4 C -0.06 -0.68 1.36 -92.93 -0.13 -0.81 16 5 H 0.10 0.92 6.98 -51.93 -0.36 0.56 16 6 C 0.54 8.07 5.84 -10.99 -0.06 8.00 16 7 O -0.54 -9.69 15.70 5.56 0.09 -9.60 16 8 N -0.60 -9.23 3.30 -172.28 -0.57 -9.80 16 9 C 0.11 1.38 5.39 -3.34 -0.02 1.36 16 10 C -0.11 -1.71 4.16 -88.27 -0.37 -2.07 16 11 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 12 C 0.15 2.93 6.49 -3.39 -0.02 2.91 16 13 N -0.60 -15.04 3.38 -171.83 -0.58 -15.62 16 14 C -0.23 -6.40 10.25 -15.06 -0.15 -6.56 16 15 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 16 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 17 N -0.92 -26.80 10.25 55.49 0.57 -26.24 16 18 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 C 0.19 4.38 4.77 -3.57 -0.02 4.37 16 23 C -0.12 -2.14 4.01 -88.60 -0.36 -2.50 16 24 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 25 C 0.12 2.08 6.22 -3.61 -0.02 2.05 16 26 C -0.02 -0.29 3.31 -104.31 -0.35 -0.63 16 27 C -0.17 -1.74 9.27 -39.44 -0.37 -2.11 16 28 C 0.10 1.16 11.18 -17.55 -0.20 0.97 16 29 N -0.49 -6.59 10.36 -13.25 -0.14 -6.73 16 30 C 0.10 1.31 11.18 -17.55 -0.20 1.11 16 31 C -0.16 -2.02 9.01 -39.44 -0.36 -2.37 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.50 7.08 -51.93 -0.37 0.14 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 1.01 7.20 -51.93 -0.37 0.63 16 36 H 0.06 0.73 7.05 -51.93 -0.37 0.37 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.83 6.90 -51.93 -0.36 0.47 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.02 0.32 7.72 -51.93 -0.40 -0.08 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.05 1.29 6.73 -51.93 -0.35 0.94 16 45 H 0.05 1.26 7.38 -51.93 -0.38 0.88 16 46 H 0.07 1.55 7.29 -51.93 -0.38 1.17 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.13 1.04 8.01 -52.49 -0.42 0.62 16 49 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 50 H 0.16 1.63 8.06 -52.49 -0.42 1.20 16 51 H 0.14 1.76 7.73 -52.49 -0.41 1.36 16 LS Contribution 397.16 15.07 5.99 5.99 Total: -1.00 -32.84 397.16 -10.25 -43.09 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.36 Total: 1.17 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.22 Total: 0.57 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.72 Total: -58.39 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.84 -10.25 -43.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049006282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.308 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds