Wall clock time and date at job start Wed Apr 1 2020 03:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47232 * 2 1 4 4 C 1.52996 * 109.47315 * 239.99399 * 2 1 3 5 5 H 1.08996 * 109.46631 * 62.15623 * 4 2 1 6 6 C 1.50704 * 109.47052 * 182.15252 * 4 2 1 7 7 O 1.21278 * 120.00024 * 35.81723 * 6 4 2 8 8 N 1.34776 * 119.99762 * 215.81449 * 6 4 2 9 9 C 1.46736 * 125.33277 * 354.71896 * 8 6 4 10 10 C 1.54102 * 106.63825 * 161.58222 * 9 8 6 11 11 H 1.08994 * 113.49390 * 151.36813 * 10 9 8 12 12 C 1.53960 * 109.44653 * 278.64419 * 10 9 8 13 13 N 1.46770 * 106.62814 * 138.17274 * 12 10 9 14 14 C 1.36942 * 125.33810 * 161.51463 * 13 12 10 15 15 H 1.07997 * 119.99892 * 0.02562 * 14 13 12 16 16 C 1.38807 * 119.99999 * 180.02562 * 14 13 12 17 17 N 1.31623 * 120.00043 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00367 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47230 * 89.99558 * 18 16 14 20 20 H 1.48496 * 109.47346 * 210.00130 * 18 16 14 21 21 H 1.48509 * 109.46540 * 329.99955 * 18 16 14 22 22 C 1.46662 * 109.32654 * 341.48352 * 13 12 10 23 23 C 1.53734 * 107.94092 * 0.54071 * 22 13 12 24 24 H 1.08999 * 113.05462 * 140.00223 * 23 22 13 25 25 C 1.46643 * 125.32663 * 175.02176 * 8 6 4 26 26 C 1.50703 * 109.47180 * 302.15530 * 4 2 1 27 27 C 1.38647 * 120.78738 * 299.71627 * 26 4 2 28 28 C 1.38203 * 119.15848 * 179.79821 * 27 26 4 29 29 N 1.31870 * 120.76853 * 0.48909 * 28 27 26 30 30 C 1.31871 * 121.72153 * 359.74544 * 29 28 27 31 31 C 1.38209 * 120.76391 * 0.02562 * 30 29 28 32 32 H 1.09001 * 109.46744 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47276 * 300.00330 * 1 2 3 34 34 H 1.08999 * 109.47181 * 60.00365 * 1 2 3 35 35 H 1.09010 * 109.47373 * 119.99242 * 2 1 3 36 36 H 1.09005 * 109.46577 * 303.40016 * 3 2 1 37 37 H 1.09000 * 109.47405 * 63.39819 * 3 2 1 38 38 H 1.08992 * 109.47292 * 183.40458 * 3 2 1 39 39 H 1.08999 * 110.01092 * 281.01189 * 9 8 6 40 40 H 1.09005 * 110.00958 * 42.37891 * 9 8 6 41 41 H 1.09007 * 110.02820 * 257.46944 * 12 10 9 42 42 H 1.09001 * 110.02755 * 18.88174 * 12 10 9 43 43 H 0.97002 * 119.99798 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.77258 * 240.92484 * 22 13 12 45 45 H 1.08999 * 109.77706 * 120.16038 * 22 13 12 46 46 H 1.08996 * 109.75952 * 300.44464 * 25 8 6 47 47 H 1.09002 * 109.76001 * 61.16279 * 25 8 6 48 48 H 1.07999 * 120.42468 * 0.02562 * 27 26 4 49 49 H 1.08002 * 119.61649 * 180.20741 * 28 27 26 50 50 H 1.08004 * 119.61980 * 180.02562 * 30 29 28 51 51 H 1.08006 * 120.41829 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 1 1.7086 -0.1857 -2.1387 6 6 3.5461 -0.7677 -1.2227 7 8 4.1301 -0.9054 -0.1687 8 7 4.2440 -0.6561 -2.3703 9 6 3.6610 -0.5960 -3.7155 10 6 4.7459 -0.0116 -4.6408 11 1 4.6650 -0.3507 -5.6735 12 6 4.7592 1.5224 -4.5101 13 7 6.1691 1.9290 -4.4787 14 6 6.6347 3.1926 -4.7276 15 1 5.9424 3.9851 -4.9703 16 6 7.9965 3.4547 -4.6679 17 7 8.8403 2.4886 -4.3725 18 14 8.6317 5.1784 -5.0066 19 1 8.6804 5.9465 -3.7366 20 1 9.9953 5.0979 -5.5891 21 1 7.7242 5.8611 -5.9635 22 6 7.0011 0.7702 -4.1384 23 6 6.0730 -0.4418 -3.9559 24 1 6.4841 -1.3609 -4.3736 25 6 5.7051 -0.5821 -2.4704 26 6 1.4946 -2.1259 -1.2760 27 6 1.7790 -3.0174 -0.2530 28 6 1.2577 -4.2961 -0.3097 29 7 0.5064 -4.6739 -1.3254 30 6 0.2193 -3.8544 -2.3180 31 6 0.7014 -2.5592 -2.3273 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5138 0.8901 36 1 1.6277 1.9736 -0.8580 37 1 1.7273 1.9385 0.9189 38 1 3.1282 1.4431 -0.0610 39 1 3.3841 -1.5967 -4.0471 40 1 2.7848 0.0524 -3.7137 41 1 4.2592 1.9744 -5.3668 42 1 4.2635 1.8226 -3.5869 43 1 9.7920 2.6718 -4.3312 44 1 7.5414 0.9636 -3.2117 45 1 7.7086 0.5747 -4.9441 46 1 6.0690 0.2836 -1.9172 47 1 6.1488 -1.4916 -2.0652 48 1 2.3971 -2.7154 0.5796 49 1 1.4718 -4.9955 0.4849 50 1 -0.3998 -4.1995 -3.1329 51 1 0.4624 -1.8926 -3.1429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049006283.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:11 Heat of formation + Delta-G solvation = 22.124382 kcal Electronic energy + Delta-G solvation = -31363.604760 eV Core-core repulsion = 27456.173416 eV Total energy + Delta-G solvation = -3907.431343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.05975 -39.95447 -38.53768 -36.18849 -35.03803 -32.81064 -32.23698 -31.40489 -30.41696 -29.71764 -28.16456 -27.24124 -25.55922 -25.41213 -23.75720 -23.18931 -22.55615 -20.63871 -20.24321 -19.44640 -18.98084 -17.46889 -17.22322 -16.70863 -16.12654 -15.81263 -15.70068 -15.57361 -14.76603 -14.74088 -14.40509 -14.00515 -13.85074 -13.74751 -13.61533 -13.36992 -13.20004 -12.69142 -12.60851 -12.45256 -12.25096 -12.13553 -11.87805 -11.84196 -11.74617 -11.49691 -11.35474 -11.13885 -10.93928 -10.84952 -10.83228 -10.36387 -10.18737 -10.12880 -10.05424 -9.95197 -9.71101 -9.68553 -9.39065 -9.35752 -8.65209 -8.42319 -6.87979 -5.76392 -3.10140 0.92536 0.98242 2.65968 3.07839 3.37436 3.42433 3.44313 3.60044 4.24458 4.28706 4.35729 4.44686 4.51924 4.68989 4.71167 4.82144 4.89890 4.94530 4.97244 5.10378 5.21022 5.24494 5.38901 5.41899 5.43054 5.49289 5.52165 5.56867 5.60189 5.65470 5.66754 5.72816 5.75160 5.80495 5.88571 5.94266 6.05020 6.07944 6.19852 6.20377 6.24283 6.28933 6.47113 6.48394 6.55708 6.64103 6.77407 7.49239 7.51792 7.65911 7.75513 7.76338 8.21784 8.23395 9.17795 9.78213 10.41696 11.35169 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017899 B = 0.002913 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.929119 B = 9608.898459 C =10159.873633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C -0.151 4.151 4 C -0.064 4.064 5 H 0.100 0.900 6 C 0.538 3.462 7 O -0.538 6.538 8 N -0.604 5.604 9 C 0.109 3.891 10 C -0.110 4.110 11 H 0.099 0.901 12 C 0.145 3.855 13 N -0.602 5.602 14 C -0.230 4.230 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.187 3.813 23 C -0.122 4.122 24 H 0.088 0.912 25 C 0.119 3.881 26 C -0.023 4.023 27 C -0.157 4.157 28 C 0.098 3.902 29 N -0.488 5.488 30 C 0.098 3.902 31 C -0.166 4.166 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.035 0.965 42 H 0.017 0.983 43 H 0.253 0.747 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.076 0.924 47 H 0.059 0.941 48 H 0.140 0.860 49 H 0.155 0.845 50 H 0.156 0.844 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.901 -10.559 4.587 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 C -0.208 4.208 4 C -0.085 4.085 5 H 0.118 0.882 6 C 0.326 3.674 7 O -0.415 6.415 8 N -0.337 5.337 9 C -0.014 4.014 10 C -0.129 4.129 11 H 0.117 0.883 12 C 0.019 3.981 13 N -0.328 5.328 14 C -0.358 4.358 15 H 0.096 0.904 16 C -0.203 4.203 17 N -0.569 5.569 18 Si 0.743 3.257 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.207 1.207 22 C 0.062 3.938 23 C -0.142 4.142 24 H 0.106 0.894 25 C -0.003 4.003 26 C -0.031 4.031 27 C -0.177 4.177 28 C -0.058 4.058 29 N -0.197 5.197 30 C -0.059 4.059 31 C -0.186 4.186 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.158 0.842 49 H 0.173 0.827 50 H 0.173 0.827 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.729 -11.367 5.195 21.691 hybrid contribution 0.808 1.799 -0.298 1.994 sum -16.920 -9.568 4.898 20.046 Atomic orbital electron populations 1.21854 0.94488 1.01789 1.02133 1.21000 0.95660 0.96464 0.96234 1.21873 1.02051 0.94859 1.02006 1.20481 0.92422 0.93488 1.02149 0.88154 1.19813 0.88503 0.76466 0.82640 1.90683 1.71193 1.49809 1.29816 1.48267 1.08056 1.71517 1.05861 1.22012 0.97011 1.00171 0.82224 1.22965 0.93760 0.97828 0.98385 0.88270 1.21232 0.88549 0.90424 0.97896 1.44209 0.99650 1.06657 1.82288 1.19027 0.91112 0.84911 1.40778 0.90433 1.24800 0.95888 0.97862 1.01753 1.69949 1.01918 1.30341 1.54675 0.86114 0.78157 0.83608 0.77842 1.21586 1.21635 1.20689 1.21035 0.90208 0.82008 1.00512 1.23143 0.97121 1.01172 0.92795 0.89378 1.21988 0.78982 1.01806 0.97525 1.19822 0.94985 0.94327 0.94013 1.22171 1.00870 0.94647 1.00031 1.22753 0.92903 0.94295 0.95841 1.67671 1.13262 1.36959 1.01792 1.22733 0.97052 0.89894 0.96257 1.22073 0.99403 0.97976 0.99101 0.92711 0.92171 0.92455 0.89695 0.92520 0.92125 0.91974 0.91871 0.91000 0.94696 0.96579 0.93664 0.93275 0.93308 0.90593 0.92223 0.84188 0.82746 0.82716 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.92 37.16 0.33 -0.90 16 2 C -0.07 -0.79 2.03 -90.62 -0.18 -0.98 16 3 C -0.15 -1.73 9.03 37.16 0.34 -1.39 16 4 C -0.06 -0.72 1.63 -92.92 -0.15 -0.87 16 5 H 0.10 0.99 6.22 -51.93 -0.32 0.67 16 6 C 0.54 8.05 5.41 -10.98 -0.06 7.99 16 7 O -0.54 -9.68 15.76 5.56 0.09 -9.59 16 8 N -0.60 -9.16 3.30 -172.28 -0.57 -9.73 16 9 C 0.11 1.38 5.77 -3.34 -0.02 1.36 16 10 C -0.11 -1.68 4.16 -88.26 -0.37 -2.05 16 11 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 12 C 0.15 2.80 6.49 -3.39 -0.02 2.78 16 13 N -0.60 -14.73 3.38 -171.85 -0.58 -15.31 16 14 C -0.23 -6.25 10.25 -15.06 -0.15 -6.41 16 15 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 16 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 17 N -0.92 -26.48 10.25 55.49 0.57 -25.92 16 18 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.19 4.32 4.77 -3.57 -0.02 4.31 16 23 C -0.12 -2.13 4.01 -88.60 -0.36 -2.48 16 24 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 25 C 0.12 2.06 6.22 -3.61 -0.02 2.04 16 26 C -0.02 -0.24 3.42 -104.32 -0.36 -0.60 16 27 C -0.16 -1.72 8.95 -39.44 -0.35 -2.07 16 28 C 0.10 1.02 11.18 -17.55 -0.20 0.82 16 29 N -0.49 -5.40 10.36 -13.25 -0.14 -5.54 16 30 C 0.10 0.90 11.18 -17.55 -0.20 0.70 16 31 C -0.17 -1.47 9.76 -39.44 -0.39 -1.85 16 32 H 0.05 0.47 7.15 -51.93 -0.37 0.10 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 1.00 7.22 -51.92 -0.37 0.62 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.89 6.93 -51.93 -0.36 0.53 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.79 6.59 -51.93 -0.34 0.44 16 41 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 42 H 0.02 0.33 7.72 -51.93 -0.40 -0.07 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.05 1.28 6.74 -51.93 -0.35 0.93 16 45 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 46 H 0.08 1.55 7.29 -51.93 -0.38 1.17 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.14 1.59 7.29 -52.49 -0.38 1.21 16 49 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 50 H 0.16 1.01 8.06 -52.48 -0.42 0.58 16 51 H 0.14 0.89 8.01 -52.48 -0.42 0.47 16 LS Contribution 396.67 15.07 5.98 5.98 Total: -1.00 -32.10 396.67 -10.23 -42.33 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -8.28 Total: 0.88 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.27 Total: 0.11 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.72 Total: -56.49 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.10 -10.23 -42.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049006283.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.452 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds