Wall clock time and date at job start Wed Apr 1 2020 02:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47464 * 2 1 4 4 C 1.50697 * 109.47084 * 239.99741 * 2 1 3 5 5 O 1.21283 * 120.00267 * 244.51835 * 4 2 1 6 6 N 1.34776 * 119.99980 * 64.51849 * 4 2 1 7 7 C 1.46505 * 119.99962 * 179.97438 * 6 4 2 8 8 H 1.08994 * 112.88670 * 334.66944 * 7 6 4 9 9 C 1.53948 * 113.65858 * 106.01561 * 7 6 4 10 10 C 1.53954 * 87.29618 * 139.20680 * 9 7 6 11 11 H 1.08998 * 113.66120 * 89.73357 * 10 9 7 12 12 N 1.46497 * 113.66201 * 220.70259 * 10 9 7 13 13 C 1.36944 * 119.99527 * 255.49219 * 12 10 9 14 14 H 1.08006 * 120.00026 * 359.97438 * 13 12 10 15 15 C 1.38806 * 119.99788 * 179.97438 * 13 12 10 16 16 N 1.31614 * 120.00242 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99799 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47557 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47437 * 120.00186 * 17 15 13 20 20 H 1.48508 * 109.47109 * 240.00005 * 17 15 13 21 21 C 1.52909 * 113.65907 * 203.31969 * 7 6 4 22 22 C 1.52905 * 121.14053 * 94.91042 * 21 7 6 23 23 C 1.53942 * 86.78430 * 209.37440 * 22 21 7 24 24 C 1.52906 * 121.14301 * 346.34452 * 21 7 6 25 25 C 1.50707 * 109.46782 * 120.00013 * 2 1 3 26 26 C 1.38670 * 120.41645 * 234.18283 * 25 2 1 27 27 C 1.38634 * 118.41857 * 179.97438 * 26 25 2 28 28 C 1.38224 * 119.16240 * 359.97438 * 27 26 25 29 29 N 1.31858 * 120.76176 * 0.02562 * 28 27 26 30 30 C 1.31883 * 121.72956 * 0.02562 * 29 28 27 31 31 H 1.09000 * 109.47453 * 300.00158 * 1 2 3 32 32 H 1.09000 * 109.47126 * 59.99982 * 1 2 3 33 33 H 1.08999 * 109.47135 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47046 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46964 * 300.00118 * 3 2 1 36 36 H 1.09000 * 109.46914 * 59.99512 * 3 2 1 37 37 H 0.96997 * 119.99788 * 359.97438 * 6 4 2 38 38 H 1.09002 * 113.57771 * 253.80871 * 9 7 6 39 39 H 1.08993 * 113.58523 * 24.59806 * 9 7 6 40 40 H 0.96993 * 120.00684 * 75.49004 * 12 10 9 41 41 H 0.97004 * 120.00519 * 180.02562 * 16 15 13 42 42 H 1.09001 * 113.66520 * 323.85061 * 22 21 7 43 43 H 1.09002 * 113.66287 * 94.89752 * 22 21 7 44 44 H 1.09006 * 113.57991 * 270.13095 * 23 22 21 45 45 H 1.08997 * 113.65537 * 139.35081 * 23 22 21 46 46 H 1.09000 * 113.66565 * 265.10221 * 24 21 7 47 47 H 1.09004 * 113.66077 * 36.06081 * 24 21 7 48 48 H 1.07997 * 120.79297 * 359.70962 * 26 25 2 49 49 H 1.07994 * 120.41949 * 179.97438 * 27 26 25 50 50 H 1.07993 * 119.61707 * 180.02562 * 28 27 26 51 51 H 1.08002 * 119.61853 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.6605 -1.7421 -1.1210 6 7 1.7835 -0.1994 -2.4524 7 6 2.2723 -0.8898 -3.6486 8 1 3.1476 -1.5090 -3.4527 9 6 1.1673 -1.6141 -4.4388 10 6 1.8536 -1.1082 -5.7207 11 1 2.6119 -1.7884 -6.1084 12 7 0.9153 -0.6544 -6.7501 13 6 0.6708 -1.4373 -7.8467 14 1 1.1701 -2.3891 -7.9528 15 6 -0.2187 -1.0076 -8.8219 16 7 -0.8267 0.1525 -8.6928 17 14 -0.5516 -2.0752 -10.3181 18 1 0.2525 -3.3203 -10.2267 19 1 -1.9951 -2.4202 -10.3688 20 1 -0.1764 -1.3336 -11.5488 21 6 2.4269 0.0243 -4.8646 22 6 3.7709 0.6703 -5.2025 23 6 2.9623 1.8235 -5.8238 24 6 1.8088 1.4228 -4.8863 25 6 2.0323 -0.7105 1.2305 26 6 2.9260 -0.0850 2.0867 27 6 3.3607 -0.7766 3.2068 28 6 2.8917 -2.0573 3.4317 29 7 2.0419 -2.6208 2.5957 30 6 1.6079 -1.9933 1.5200 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1300 1.4423 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.2808 0.6255 -2.5399 38 1 1.1924 -2.6983 -4.3295 39 1 0.1733 -1.1954 -4.2821 40 1 0.4671 0.2005 -6.6550 41 1 -1.4486 0.4527 -9.3740 42 1 4.3482 0.9635 -4.3256 43 1 4.3572 0.1064 -5.9280 44 1 2.7362 1.6780 -6.8801 45 1 3.3739 2.8102 -5.6116 46 1 0.8275 1.4601 -5.3592 47 1 1.8331 1.9268 -3.9201 48 1 3.2785 0.9154 1.8834 49 1 4.0570 -0.3206 3.8949 50 1 3.2251 -2.6025 4.3022 51 1 0.9121 -2.4875 0.8580 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078666014.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:45 Heat of formation + Delta-G solvation = 51.427389 kcal Electronic energy + Delta-G solvation = -30673.162125 eV Core-core repulsion = 26767.001455 eV Total energy + Delta-G solvation = -3906.160670 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.15544 -40.35570 -38.99754 -35.83399 -34.89826 -34.14169 -32.55315 -32.24245 -30.38462 -29.69633 -27.93580 -25.54515 -25.09505 -24.35889 -24.18255 -23.39194 -22.93765 -21.40453 -20.48215 -19.62682 -18.03596 -17.62225 -17.27646 -16.76002 -16.34920 -16.23524 -15.34876 -15.13519 -14.96168 -14.61188 -14.48421 -14.26799 -14.13708 -13.78221 -13.41898 -13.11280 -12.99604 -12.78719 -12.65548 -12.52591 -12.43782 -12.24620 -12.11560 -11.85911 -11.68874 -11.53130 -11.34954 -11.24833 -10.94496 -10.82641 -10.73315 -10.20007 -10.07171 -10.05189 -9.92814 -9.86869 -9.58665 -9.56592 -9.45204 -9.11182 -8.88516 -8.66908 -7.00040 -5.83084 -3.11294 0.93237 1.11400 2.63730 3.18766 3.40141 3.47027 3.48413 3.71357 4.06028 4.38697 4.42832 4.54557 4.57378 4.69173 4.72784 4.77058 4.80723 4.90893 4.99185 5.03113 5.18242 5.21120 5.23603 5.29424 5.35991 5.42370 5.43354 5.47719 5.60731 5.65798 5.70432 5.80044 5.85984 5.89102 5.91996 5.94583 5.96384 6.02973 6.07576 6.20160 6.29221 6.36844 6.48168 6.52066 6.57867 6.59148 6.81985 6.89562 7.04646 7.61225 7.67644 7.83465 8.27136 8.35941 9.47848 10.04135 10.39149 11.39293 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019372 B = 0.002488 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.002971 B =11250.641656 C =11795.338263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.040 4.040 3 C -0.145 4.145 4 C 0.521 3.479 5 O -0.536 6.536 6 N -0.706 5.706 7 C 0.131 3.869 8 H 0.108 0.892 9 C -0.173 4.173 10 C 0.193 3.807 11 H 0.079 0.921 12 N -0.706 5.706 13 C -0.241 4.241 14 H 0.072 0.928 15 C -0.012 4.012 16 N -0.932 5.932 17 Si 0.906 3.094 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.130 4.130 24 C -0.117 4.117 25 C -0.109 4.109 26 C -0.073 4.073 27 C -0.177 4.177 28 C 0.093 3.907 29 N -0.485 5.485 30 C 0.132 3.868 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.398 0.602 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.056 0.944 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.136 0.864 49 H 0.133 0.867 50 H 0.153 0.847 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 5.708 22.158 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.044 4.044 3 C -0.202 4.202 4 C 0.306 3.694 5 O -0.412 6.412 6 N -0.356 5.356 7 C 0.026 3.974 8 H 0.126 0.874 9 C -0.216 4.216 10 C 0.080 3.920 11 H 0.097 0.903 12 N -0.345 5.345 13 C -0.372 4.372 14 H 0.090 0.910 15 C -0.208 4.208 16 N -0.580 5.580 17 Si 0.737 3.263 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.120 4.120 22 C -0.164 4.164 23 C -0.167 4.167 24 C -0.154 4.154 25 C -0.111 4.111 26 C -0.099 4.099 27 C -0.197 4.197 28 C -0.064 4.064 29 N -0.193 5.193 30 C -0.026 4.026 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.234 0.766 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.222 0.778 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.154 0.846 49 H 0.151 0.849 50 H 0.170 0.830 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.038 3.980 22.213 23.639 hybrid contribution -0.302 0.982 -0.995 1.430 sum 6.737 4.962 21.219 22.809 Atomic orbital electron populations 1.21906 0.91200 1.03396 1.03281 1.19672 0.97639 0.96014 0.91044 1.21970 1.01841 0.93120 1.03288 1.20252 0.79670 0.85105 0.84342 1.90719 1.40187 1.23713 1.86582 1.45957 1.56431 1.27882 1.05369 1.22298 0.98459 0.94979 0.81638 0.87381 1.24263 0.98523 0.99817 0.98948 1.21087 0.91811 0.92066 0.87068 0.90278 1.42340 1.48732 1.22611 1.20845 1.19336 1.20261 1.00235 0.97389 0.91027 1.24731 0.99801 0.97227 0.99017 1.69656 1.32357 1.20288 1.35740 0.86135 0.77655 0.79533 0.82970 1.20516 1.21880 1.21890 1.23593 0.97215 0.94963 0.96255 1.22703 0.95797 0.97859 1.00008 1.22726 0.96475 0.97067 1.00456 1.22427 0.99730 0.94359 0.98919 1.20321 0.98717 0.96126 0.95944 1.21556 0.94648 1.00226 0.93422 1.22090 1.02055 0.96617 0.98894 1.22769 0.93147 0.92678 0.97770 1.67725 1.11132 1.36731 1.03755 1.22537 0.96488 0.90762 0.92770 0.91129 0.91117 0.91518 0.91613 0.91300 0.90979 0.76623 0.92154 0.90156 0.77785 0.93529 0.91047 0.91475 0.89135 0.92511 0.90258 0.91232 0.84598 0.84907 0.82977 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.17 37.16 0.30 -0.85 16 2 C -0.04 -0.38 0.72 -156.81 -0.11 -0.49 16 3 C -0.14 -1.02 7.03 37.15 0.26 -0.76 16 4 C 0.52 6.76 6.40 -10.99 -0.07 6.69 16 5 O -0.54 -9.09 14.95 5.55 0.08 -9.01 16 6 N -0.71 -8.66 5.09 -53.37 -0.27 -8.93 16 7 C 0.13 1.93 4.09 -67.48 -0.28 1.65 16 8 H 0.11 1.72 7.50 -51.93 -0.39 1.34 16 9 C -0.17 -2.98 7.68 -25.74 -0.20 -3.18 16 10 C 0.19 3.64 4.35 -67.38 -0.29 3.34 16 11 H 0.08 1.53 8.12 -51.93 -0.42 1.11 16 12 N -0.71 -16.57 5.36 -52.89 -0.28 -16.85 16 13 C -0.24 -6.43 9.98 -15.06 -0.15 -6.59 16 14 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 15 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -27.09 13.06 55.49 0.72 -26.37 16 17 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 C -0.12 -1.78 1.07 -154.61 -0.17 -1.95 16 22 C -0.13 -1.77 7.84 -26.29 -0.21 -1.97 16 23 C -0.13 -1.88 8.08 -25.76 -0.21 -2.09 16 24 C -0.12 -1.66 6.77 -26.29 -0.18 -1.83 16 25 C -0.11 -1.17 4.33 -104.48 -0.45 -1.62 16 26 C -0.07 -0.66 9.09 -39.28 -0.36 -1.02 16 27 C -0.18 -1.50 10.11 -39.44 -0.40 -1.90 16 28 C 0.09 0.93 11.18 -17.55 -0.20 0.73 16 29 N -0.49 -6.20 10.36 -13.25 -0.14 -6.34 16 30 C 0.13 1.64 9.33 -17.55 -0.16 1.48 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.53 7.89 -51.93 -0.41 0.12 16 33 H 0.07 0.60 7.11 -51.93 -0.37 0.23 16 34 H 0.06 0.48 7.27 -51.93 -0.38 0.10 16 35 H 0.07 0.43 7.32 -51.93 -0.38 0.05 16 36 H 0.07 0.39 7.82 -51.93 -0.41 -0.01 16 37 H 0.40 4.14 5.87 -40.82 -0.24 3.90 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.39 9.49 5.89 -40.82 -0.24 9.25 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.32 6.44 -51.93 -0.33 0.99 16 47 H 0.07 0.80 6.99 -51.93 -0.36 0.43 16 48 H 0.14 0.92 6.07 -52.49 -0.32 0.60 16 49 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 50 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 51 H 0.15 1.86 7.25 -52.49 -0.38 1.48 16 LS Contribution 402.22 15.07 6.06 6.06 Total: -1.00 -32.10 402.22 -9.79 -41.89 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -7.98 Total: 13.39 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -2.96 Total: -10.78 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.03 Total: -58.49 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.10 -9.79 -41.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078666014.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.314 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds