Wall clock time and date at job start Wed Apr 1 2020 03:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47283 * 2 1 4 4 C 1.53002 * 109.46891 * 119.99748 * 2 1 3 5 5 H 1.09003 * 109.47129 * 301.89782 * 4 2 1 6 6 C 1.50704 * 109.47040 * 61.90244 * 4 2 1 7 7 O 1.21279 * 120.00224 * 33.92537 * 6 4 2 8 8 N 1.34771 * 119.99576 * 213.92640 * 6 4 2 9 9 C 1.47806 * 135.01629 * 355.21126 * 8 6 4 10 10 C 1.54653 * 85.79493 * 153.83902 * 9 8 6 11 11 H 1.09002 * 114.44245 * 140.42110 * 10 9 8 12 12 C 1.53010 * 110.83631 * 270.23262 * 10 9 8 13 13 C 1.53100 * 109.44965 * 143.88737 * 12 10 9 14 14 N 1.46619 * 108.04869 * 300.99576 * 13 12 10 15 15 C 1.36937 * 119.89461 * 237.35422 * 14 13 12 16 16 H 1.07994 * 119.99913 * 150.19426 * 15 14 13 17 17 C 1.38812 * 119.99818 * 330.18925 * 15 14 13 18 18 N 1.31618 * 119.99835 * 161.97375 * 17 15 14 19 19 Si 1.86805 * 120.00110 * 341.97235 * 17 15 14 20 20 H 1.48499 * 109.47150 * 89.24136 * 19 17 15 21 21 H 1.48500 * 109.47179 * 209.24730 * 19 17 15 22 22 H 1.48500 * 109.47005 * 329.24469 * 19 17 15 23 23 C 1.45781 * 120.14967 * 57.29907 * 14 13 12 24 24 C 1.46821 * 135.01270 * 175.25759 * 8 6 4 25 25 H 1.08998 * 111.56594 * 94.44361 * 24 8 6 26 26 C 1.50704 * 109.46896 * 181.89842 * 4 2 1 27 27 C 1.38645 * 120.79485 * 299.72146 * 26 4 2 28 28 C 1.38199 * 119.16529 * 179.75671 * 27 26 4 29 29 N 1.31868 * 120.76294 * 0.53214 * 28 27 26 30 30 C 1.31867 * 121.72817 * 359.73450 * 29 28 27 31 31 C 1.38206 * 120.76168 * 359.97438 * 30 29 28 32 32 H 1.09002 * 109.47088 * 294.61034 * 1 2 3 33 33 H 1.09004 * 109.47101 * 54.60723 * 1 2 3 34 34 H 1.08999 * 109.47416 * 174.60789 * 1 2 3 35 35 H 1.08994 * 109.47230 * 239.99727 * 2 1 3 36 36 H 1.08997 * 109.47269 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.46972 * 300.00003 * 3 2 1 38 38 H 1.08994 * 109.47210 * 59.99715 * 3 2 1 39 39 H 1.08995 * 113.82447 * 39.61959 * 9 8 6 40 40 H 1.09007 * 113.82142 * 268.05345 * 9 8 6 41 41 H 1.08997 * 109.47554 * 23.89106 * 12 10 9 42 42 H 1.09002 * 109.48070 * 263.87948 * 12 10 9 43 43 H 1.08998 * 109.75618 * 60.65165 * 13 12 10 44 44 H 1.09002 * 109.75598 * 181.34733 * 13 12 10 45 45 H 0.97005 * 119.99570 * 180.02562 * 18 17 15 46 46 H 1.08997 * 108.69996 * 199.78782 * 23 14 13 47 47 H 1.09000 * 108.59403 * 81.71725 * 23 14 13 48 48 H 1.08002 * 120.41470 * 0.02562 * 27 26 4 49 49 H 1.08000 * 119.62132 * 180.29478 * 28 27 26 50 50 H 1.07996 * 119.62450 * 180.02562 * 30 29 28 51 51 H 1.08003 * 120.41642 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6490 -0.2273 2.1390 6 6 1.5764 -2.1550 1.2260 7 8 1.4746 -2.7423 0.1698 8 7 1.2751 -2.7845 2.3789 9 6 1.3593 -2.4367 3.8129 10 6 0.2063 -3.4485 4.0093 11 1 0.2933 -4.0630 4.9053 12 6 -1.1525 -2.7581 3.8746 13 6 -2.1411 -3.7071 3.1920 14 7 -1.5979 -4.0597 1.8766 15 6 -2.3293 -3.8084 0.7465 16 1 -1.8270 -3.5992 -0.1864 17 6 -3.7163 -3.8229 0.8000 18 7 -4.4176 -3.2493 -0.1547 19 14 -4.5874 -4.6563 2.2269 20 1 -4.7868 -3.6769 3.3252 21 1 -5.9061 -5.1658 1.7723 22 1 -3.7616 -5.7888 2.7175 23 6 -0.2810 -4.6757 1.7694 24 6 0.7277 -4.1006 2.7311 25 1 1.5188 -4.8204 2.9409 26 6 3.5462 -0.6806 1.2731 27 6 4.2879 -1.2501 0.2495 28 6 5.6675 -1.1890 0.3028 29 7 6.2781 -0.6073 1.3166 30 6 5.6053 -0.0600 2.3099 31 6 4.2234 -0.0775 2.3219 32 1 -0.3633 0.4280 0.9343 33 1 -0.3633 0.5952 -0.8378 34 1 -0.3634 -1.0231 -0.0966 35 1 1.8933 -0.5138 -0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6767 1.9563 0.8899 39 1 1.0825 -1.4057 4.0329 40 1 2.2946 -2.7381 4.2849 41 1 -1.0431 -1.8545 3.2749 42 1 -1.5260 -2.4946 4.8641 43 1 -2.2626 -4.6077 3.7938 44 1 -3.1045 -3.2116 3.0719 45 1 -5.3869 -3.2591 -0.1171 46 1 0.0873 -4.5385 0.7527 47 1 -0.3800 -5.7437 1.9636 48 1 3.7936 -1.7317 -0.5813 49 1 6.2524 -1.6261 -0.4929 50 1 6.1402 0.4079 3.1231 51 1 3.6780 0.3728 3.1381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084609151.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:51 Heat of formation + Delta-G solvation = 60.154546 kcal Electronic energy + Delta-G solvation = -32189.549012 eV Core-core repulsion = 28283.766780 eV Total energy + Delta-G solvation = -3905.782232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.05521 -40.24092 -38.38883 -35.88485 -35.54597 -32.65521 -31.93853 -31.34665 -31.16653 -29.73129 -27.65121 -27.07308 -26.91583 -23.80308 -23.65757 -23.59380 -22.56062 -21.31304 -20.79681 -19.43971 -17.92353 -17.24793 -17.01699 -16.57364 -16.00126 -15.89451 -15.68988 -15.42340 -15.20101 -14.41925 -14.28219 -13.99924 -13.80489 -13.71413 -13.64697 -13.44604 -13.15048 -12.75069 -12.62922 -12.36381 -12.32613 -12.19434 -12.00662 -11.91929 -11.70809 -11.43739 -11.20392 -11.06108 -10.94127 -10.80946 -10.76746 -10.57750 -10.30916 -10.04140 -9.87800 -9.63971 -9.61794 -9.43188 -9.30150 -9.02953 -8.66400 -8.33043 -6.90641 -5.89307 -3.27965 0.98178 1.05781 2.92195 2.99311 3.29806 3.48505 3.51241 3.65854 4.30083 4.35253 4.47492 4.47979 4.54714 4.64430 4.82940 4.94317 4.96359 4.98450 5.03273 5.07077 5.17933 5.32395 5.34395 5.41451 5.42326 5.47771 5.51893 5.61032 5.65120 5.67150 5.79099 5.79800 5.82957 5.86341 5.95353 5.98307 6.04474 6.14135 6.17595 6.23782 6.28211 6.32844 6.46778 6.54121 6.58207 6.62469 6.74097 6.78904 6.90810 7.80615 8.00797 8.07359 8.41530 8.48778 9.02507 9.77457 10.11638 11.26796 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.003771 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.656057 B = 7423.051160 C = 8150.408682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.073 4.073 3 C -0.144 4.144 4 C -0.060 4.060 5 H 0.094 0.906 6 C 0.554 3.446 7 O -0.523 6.523 8 N -0.629 5.629 9 C 0.096 3.904 10 C -0.108 4.108 11 H 0.090 0.910 12 C -0.117 4.117 13 C 0.123 3.877 14 N -0.597 5.597 15 C -0.252 4.252 16 H 0.085 0.915 17 C 0.023 3.977 18 N -0.911 5.911 19 Si 0.886 3.114 20 H -0.289 1.289 21 H -0.305 1.305 22 H -0.272 1.272 23 C 0.144 3.856 24 C 0.132 3.868 25 H 0.078 0.922 26 C -0.020 4.020 27 C -0.157 4.157 28 C 0.098 3.902 29 N -0.489 5.489 30 C 0.096 3.904 31 C -0.168 4.168 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.026 0.974 44 H 0.077 0.923 45 H 0.261 0.739 46 H 0.080 0.920 47 H 0.025 0.975 48 H 0.141 0.859 49 H 0.155 0.845 50 H 0.154 0.846 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.836 7.391 9.223 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.092 4.092 3 C -0.202 4.202 4 C -0.081 4.081 5 H 0.112 0.888 6 C 0.342 3.658 7 O -0.399 6.399 8 N -0.365 5.365 9 C -0.027 4.027 10 C -0.127 4.127 11 H 0.108 0.892 12 C -0.156 4.156 13 C -0.002 4.002 14 N -0.320 5.320 15 C -0.380 4.380 16 H 0.102 0.898 17 C -0.176 4.176 18 N -0.554 5.554 19 Si 0.717 3.283 20 H -0.217 1.217 21 H -0.234 1.234 22 H -0.197 1.197 23 C 0.017 3.983 24 C 0.028 3.972 25 H 0.096 0.904 26 C -0.028 4.028 27 C -0.177 4.177 28 C -0.058 4.058 29 N -0.199 5.199 30 C -0.061 4.061 31 C -0.188 4.188 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.043 0.957 48 H 0.159 0.841 49 H 0.173 0.827 50 H 0.171 0.829 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 17.593 7.219 8.352 20.770 hybrid contribution -1.492 -0.408 0.941 1.811 sum 16.101 6.811 9.293 19.799 Atomic orbital electron populations 1.21856 0.93217 1.04106 1.01470 1.20999 0.97073 0.95187 0.95980 1.21857 1.00549 0.95733 1.02037 1.20416 0.91163 0.94576 1.01952 0.88789 1.19637 0.76510 0.87237 0.82404 1.90701 1.52426 1.67260 1.29481 1.49810 1.63709 1.18134 1.04809 1.23566 0.98388 1.00251 0.80514 1.22881 0.95411 0.97029 0.97426 0.89202 1.21853 0.93990 0.99767 0.99996 1.21296 0.96430 0.95490 0.87004 1.43824 1.15439 1.70367 1.02375 1.18927 0.88315 1.41769 0.89039 0.89770 1.25295 0.96221 0.99260 0.96788 1.69815 1.06064 1.44903 1.34614 0.86953 0.78495 0.80623 0.82186 1.21716 1.23363 1.19714 1.20215 0.85182 0.94059 0.98832 1.22330 0.95306 0.85835 0.93729 0.90421 1.19895 0.94439 0.94711 0.93800 1.22198 0.95319 1.00165 1.00031 1.22748 0.91978 0.95230 0.95824 1.67658 1.41375 1.08976 1.01847 1.22697 0.91220 0.95901 0.96278 1.22044 0.95898 1.01597 0.99223 0.93117 0.92358 0.90596 0.89820 0.93030 0.92161 0.92706 0.90384 0.90234 0.91405 0.92326 0.95566 0.90516 0.92885 0.90187 0.95747 0.84107 0.82744 0.82861 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.86 37.16 0.33 -2.05 16 2 C -0.07 -0.99 2.01 -90.62 -0.18 -1.18 16 3 C -0.14 -1.57 8.92 37.16 0.33 -1.24 16 4 C -0.06 -0.78 1.86 -92.92 -0.17 -0.95 16 5 H 0.09 1.10 7.37 -51.93 -0.38 0.72 16 6 C 0.55 9.23 5.74 -10.99 -0.06 9.16 16 7 O -0.52 -10.73 14.59 5.56 0.08 -10.65 16 8 N -0.63 -9.64 3.34 -173.99 -0.58 -10.22 16 9 C 0.10 1.08 7.80 -3.01 -0.02 1.06 16 10 C -0.11 -1.44 4.39 -89.97 -0.40 -1.84 16 11 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 12 C -0.12 -1.88 5.66 -26.67 -0.15 -2.03 16 13 C 0.12 2.58 4.15 -3.93 -0.02 2.56 16 14 N -0.60 -14.07 2.76 -174.99 -0.48 -14.55 16 15 C -0.25 -7.12 9.97 -15.06 -0.15 -7.27 16 16 H 0.08 2.66 8.02 -52.49 -0.42 2.24 16 17 C 0.02 0.66 5.26 -17.43 -0.09 0.57 16 18 N -0.91 -28.08 13.97 55.49 0.78 -27.31 16 19 Si 0.89 22.30 24.33 -169.99 -4.14 18.17 16 20 H -0.29 -6.91 6.47 56.52 0.37 -6.54 16 21 H -0.31 -7.88 7.11 56.52 0.40 -7.48 16 22 H -0.27 -6.72 6.82 56.52 0.39 -6.34 16 23 C 0.14 2.95 6.19 -5.55 -0.03 2.91 16 24 C 0.13 2.10 4.22 -69.59 -0.29 1.80 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 26 C -0.02 -0.23 3.43 -104.32 -0.36 -0.59 16 27 C -0.16 -1.91 8.97 -39.45 -0.35 -2.27 16 28 C 0.10 1.11 11.18 -17.55 -0.20 0.91 16 29 N -0.49 -5.75 10.36 -13.26 -0.14 -5.88 16 30 C 0.10 0.94 11.18 -17.55 -0.20 0.75 16 31 C -0.17 -1.63 9.76 -39.44 -0.39 -2.01 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.56 7.10 -51.93 -0.37 1.19 16 35 H 0.08 1.24 7.21 -51.93 -0.37 0.87 16 36 H 0.05 0.55 7.16 -51.93 -0.37 0.17 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.78 7.66 -51.93 -0.40 0.38 16 40 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 41 H 0.07 1.20 7.69 -51.93 -0.40 0.80 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.53 7.32 -51.93 -0.38 0.15 16 44 H 0.08 1.79 4.15 -51.93 -0.22 1.57 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 46 H 0.08 1.86 6.40 -51.93 -0.33 1.52 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.14 1.83 7.37 -52.49 -0.39 1.45 16 49 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 50 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16 51 H 0.13 0.98 8.01 -52.48 -0.42 0.56 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -33.74 392.49 -9.26 -43.00 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.29 Total: 3.24 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -2.40 Total: -1.71 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.43 Total: -57.96 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.74 -9.26 -43.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084609151.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.152 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds