Wall clock time and date at job start Wed Apr 1 2020 03:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46865 * 2 1 4 4 C 1.53003 * 109.46977 * 120.00074 * 2 1 3 5 5 H 1.08997 * 109.47140 * 300.48117 * 4 2 1 6 6 C 1.50702 * 109.46822 * 180.48373 * 4 2 1 7 7 O 1.21279 * 119.99870 * 324.08054 * 6 4 2 8 8 N 1.34778 * 119.99888 * 144.07525 * 6 4 2 9 9 C 1.47800 * 135.01081 * 355.00170 * 8 6 4 10 10 C 1.54656 * 85.79361 * 153.76652 * 9 8 6 11 11 H 1.08999 * 114.44405 * 140.42359 * 10 9 8 12 12 C 1.53013 * 110.83403 * 270.23151 * 10 9 8 13 13 C 1.53109 * 109.44590 * 143.88385 * 12 10 9 14 14 N 1.46615 * 108.04984 * 301.00076 * 13 12 10 15 15 C 1.36945 * 119.88658 * 237.35355 * 14 13 12 16 16 H 1.08000 * 120.00006 * 26.66753 * 15 14 13 17 17 C 1.38810 * 119.99747 * 206.66438 * 15 14 13 18 18 N 1.31619 * 120.00159 * 10.02442 * 17 15 14 19 19 Si 1.86803 * 120.00135 * 190.01733 * 17 15 14 20 20 H 1.48498 * 109.46639 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46678 * 120.00101 * 19 17 15 22 22 H 1.48497 * 109.47241 * 240.00550 * 19 17 15 23 23 C 1.45769 * 120.15862 * 57.29843 * 14 13 12 24 24 C 1.46815 * 135.01014 * 174.94042 * 8 6 4 25 25 H 1.09004 * 111.55941 * 94.52745 * 24 8 6 26 26 C 1.50695 * 109.47009 * 60.48658 * 4 2 1 27 27 C 1.38654 * 120.79285 * 59.71661 * 26 4 2 28 28 C 1.38201 * 119.15830 * 179.75657 * 27 26 4 29 29 N 1.31867 * 120.76850 * 0.52950 * 28 27 26 30 30 C 1.31872 * 121.72407 * 359.74190 * 29 28 27 31 31 C 1.38199 * 120.76379 * 359.97438 * 30 29 28 32 32 H 1.09003 * 109.46888 * 299.99790 * 1 2 3 33 33 H 1.08999 * 109.46764 * 59.99660 * 1 2 3 34 34 H 1.09000 * 109.46823 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.46888 * 240.00210 * 2 1 3 36 36 H 1.09001 * 109.46812 * 185.86161 * 3 2 1 37 37 H 1.08997 * 109.47510 * 305.86270 * 3 2 1 38 38 H 1.08998 * 109.47084 * 65.86585 * 3 2 1 39 39 H 1.08996 * 113.82577 * 39.55091 * 9 8 6 40 40 H 1.09001 * 113.93256 * 267.99495 * 9 8 6 41 41 H 1.08997 * 109.47560 * 23.89094 * 12 10 9 42 42 H 1.09000 * 109.47928 * 263.87792 * 12 10 9 43 43 H 1.09003 * 109.75259 * 60.65434 * 13 12 10 44 44 H 1.09002 * 109.75163 * 181.34500 * 13 12 10 45 45 H 0.97003 * 119.99979 * 179.97438 * 18 17 15 46 46 H 1.08993 * 108.70563 * 199.79257 * 23 14 13 47 47 H 1.09002 * 108.59770 * 81.71110 * 23 14 13 48 48 H 1.08001 * 120.41417 * 0.02562 * 27 26 4 49 49 H 1.08007 * 119.61230 * 180.25084 * 28 27 26 50 50 H 1.07998 * 119.61225 * 179.97438 * 30 29 28 51 51 H 1.08002 * 120.41527 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6697 -0.2125 2.1392 6 6 3.5470 -0.7109 1.2552 7 8 4.1582 -0.8121 0.2126 8 7 4.2154 -0.5891 2.4192 9 6 3.8294 -0.3580 3.8271 10 6 5.1439 -1.0883 4.1883 11 1 5.6831 -0.6561 5.0313 12 6 4.9102 -2.5944 4.3235 13 6 6.1322 -3.3495 3.7934 14 7 6.3262 -2.9714 2.3902 15 6 6.3364 -3.9364 1.4186 16 1 5.8013 -4.8620 1.5712 17 6 7.0345 -3.7248 0.2376 18 7 7.8438 -2.6928 0.1273 19 14 6.8255 -4.9050 -1.1953 20 1 5.8661 -5.9744 -0.8196 21 1 6.3056 -4.1657 -2.3735 22 1 8.1380 -5.5126 -1.5316 23 6 6.5070 -1.5712 2.0273 24 6 5.6288 -0.6320 2.8144 25 1 6.0643 0.3665 2.8533 26 6 1.5476 -2.1455 1.2432 27 6 1.8778 -3.0063 0.2076 28 6 1.4119 -4.3071 0.2388 29 7 0.6539 -4.7285 1.2321 30 6 0.3155 -3.9363 2.2305 31 6 0.7488 -2.6246 2.2702 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 3.1250 1.4444 -0.1050 37 1 1.5935 1.9858 -0.8328 38 1 1.7650 1.9252 0.9378 39 1 2.9303 -0.8940 4.1308 40 1 3.8164 0.6932 4.1152 41 1 4.0295 -2.8787 3.7477 42 1 4.7550 -2.8454 5.3728 43 1 7.0138 -3.0771 4.3737 44 1 5.9612 -4.4236 3.8653 45 1 8.3319 -2.5451 -0.6978 46 1 6.2834 -1.4532 0.9671 47 1 7.5491 -1.3000 2.1966 48 1 2.4948 -2.6658 -0.6107 49 1 1.6680 -4.9850 -0.5621 50 1 -0.3074 -4.3171 3.0264 51 1 0.4686 -1.9808 3.0909 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084609152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:57 Heat of formation + Delta-G solvation = 56.158450 kcal Electronic energy + Delta-G solvation = -32858.239735 eV Core-core repulsion = 28952.284220 eV Total energy + Delta-G solvation = -3905.955515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.79780 -39.91629 -38.18239 -35.73741 -35.16991 -32.50934 -32.12008 -31.02702 -30.15343 -29.46405 -27.39662 -27.12517 -26.76856 -23.88404 -23.39747 -23.08127 -22.30925 -21.13742 -20.54254 -19.23366 -17.80613 -17.16774 -16.85248 -16.10505 -15.77887 -15.62139 -15.45648 -15.34524 -14.54679 -14.30564 -14.05378 -13.67394 -13.63251 -13.52299 -13.33176 -13.21537 -13.06951 -12.77979 -12.46826 -12.37683 -12.13288 -12.05584 -11.89614 -11.53048 -11.48064 -11.19896 -11.06233 -10.97123 -10.71078 -10.65506 -10.65289 -10.46061 -10.17134 -9.89057 -9.82736 -9.74241 -9.45636 -9.31680 -8.96237 -8.78500 -8.30751 -8.09587 -6.56889 -5.65095 -3.09581 1.30438 1.37826 3.15623 3.24656 3.45278 3.52034 3.53770 3.97940 4.51568 4.57501 4.58710 4.62113 4.71964 4.82413 4.94066 5.04282 5.20412 5.22091 5.28882 5.32446 5.40278 5.45184 5.47945 5.54378 5.57182 5.60046 5.61852 5.71641 5.76004 5.79317 5.87355 5.89888 5.97123 6.02575 6.12872 6.14008 6.18691 6.29228 6.30275 6.31954 6.38884 6.50207 6.55432 6.60421 6.79148 6.86589 7.00303 7.51899 7.79750 7.95031 8.13142 8.30319 8.58632 8.74864 9.36320 9.99249 10.48392 11.42679 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009020 B = 0.005658 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.301314 B = 4947.923440 C = 5591.992509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 C -0.148 4.148 4 C -0.058 4.058 5 H 0.089 0.911 6 C 0.547 3.453 7 O -0.514 6.514 8 N -0.628 5.628 9 C 0.093 3.907 10 C -0.109 4.109 11 H 0.085 0.915 12 C -0.116 4.116 13 C 0.147 3.853 14 N -0.584 5.584 15 C -0.248 4.248 16 H 0.061 0.939 17 C 0.011 3.989 18 N -0.904 5.904 19 Si 0.898 3.102 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.291 1.291 23 C 0.166 3.834 24 C 0.124 3.876 25 H 0.070 0.930 26 C -0.021 4.021 27 C -0.144 4.144 28 C 0.103 3.897 29 N -0.487 5.487 30 C 0.094 3.906 31 C -0.169 4.169 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.020 0.980 44 H 0.054 0.946 45 H 0.251 0.749 46 H 0.107 0.893 47 H 0.030 0.970 48 H 0.140 0.860 49 H 0.154 0.846 50 H 0.151 0.849 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.934 7.525 7.440 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.096 4.096 3 C -0.206 4.206 4 C -0.080 4.080 5 H 0.107 0.893 6 C 0.335 3.665 7 O -0.389 6.389 8 N -0.364 5.364 9 C -0.031 4.031 10 C -0.128 4.128 11 H 0.104 0.896 12 C -0.155 4.155 13 C 0.021 3.979 14 N -0.307 5.307 15 C -0.378 4.378 16 H 0.079 0.921 17 C -0.188 4.188 18 N -0.549 5.549 19 Si 0.728 3.272 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.218 1.218 23 C 0.040 3.960 24 C 0.021 3.979 25 H 0.088 0.912 26 C -0.030 4.030 27 C -0.164 4.164 28 C -0.053 4.053 29 N -0.196 5.196 30 C -0.063 4.063 31 C -0.189 4.189 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.125 0.875 47 H 0.048 0.952 48 H 0.158 0.842 49 H 0.171 0.829 50 H 0.169 0.831 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.895 6.628 6.496 17.550 hybrid contribution 0.231 0.479 -0.601 0.802 sum -14.664 7.107 5.895 17.329 Atomic orbital electron populations 1.21841 0.94718 1.01861 1.01694 1.21000 0.95442 0.96271 0.96870 1.21859 1.02206 0.95126 1.01371 1.20375 0.93546 0.93162 1.00870 0.89259 1.19609 0.87974 0.76586 0.82328 1.90756 1.69074 1.48639 1.30414 1.49855 1.09663 1.71210 1.05699 1.23556 0.98907 0.99584 0.81011 1.22848 0.95540 0.97066 0.97362 0.89638 1.21845 1.01250 0.93079 0.99358 1.20739 0.93462 0.96870 0.86867 1.43477 1.84698 1.02018 1.00468 1.19105 1.24882 0.97682 0.96127 0.92127 1.24976 0.96633 0.97852 0.99313 1.69985 1.29052 1.29823 1.26040 0.86276 0.77269 0.80441 0.83172 1.20359 1.21503 1.21811 1.20149 0.93684 0.81873 1.00280 1.22699 0.83314 0.99710 0.92195 0.91168 1.19738 0.94816 0.94401 0.94001 1.22148 0.99666 0.94724 0.99873 1.22719 0.92772 0.93818 0.96005 1.67639 1.12433 1.37609 1.01951 1.22619 0.97510 0.90129 0.96085 1.21925 1.00166 0.97593 0.99196 0.92762 0.92363 0.92615 0.89585 0.91798 0.92343 0.93061 0.90929 0.90483 0.92220 0.92845 0.96247 0.92698 0.93852 0.87509 0.95207 0.84221 0.82851 0.83136 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.95 37.16 0.33 -1.15 16 2 C -0.08 -0.99 2.03 -90.61 -0.18 -1.18 16 3 C -0.15 -1.81 8.81 37.16 0.33 -1.49 16 4 C -0.06 -0.82 1.91 -92.92 -0.18 -1.00 16 5 H 0.09 1.06 7.48 -51.93 -0.39 0.67 16 6 C 0.55 10.15 5.67 -10.98 -0.06 10.09 16 7 O -0.51 -11.93 14.53 5.56 0.08 -11.85 16 8 N -0.63 -10.94 3.34 -174.00 -0.58 -11.52 16 9 C 0.09 1.19 7.64 -3.01 -0.02 1.17 16 10 C -0.11 -1.64 4.39 -89.97 -0.40 -2.03 16 11 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 12 C -0.12 -1.93 5.66 -26.67 -0.15 -2.08 16 13 C 0.15 3.06 6.47 -3.92 -0.03 3.04 16 14 N -0.58 -14.80 3.02 -175.00 -0.53 -15.33 16 15 C -0.25 -7.05 9.54 -15.06 -0.14 -7.20 16 16 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 17 C 0.01 0.31 5.05 -17.43 -0.09 0.22 16 18 N -0.90 -27.26 10.79 55.49 0.60 -26.66 16 19 Si 0.90 23.05 29.57 -169.99 -5.03 18.02 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 C 0.17 4.09 4.61 -5.56 -0.03 4.07 16 24 C 0.12 2.35 4.22 -69.59 -0.29 2.05 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 26 C -0.02 -0.31 3.54 -104.32 -0.37 -0.68 16 27 C -0.14 -2.40 8.93 -39.44 -0.35 -2.75 16 28 C 0.10 1.66 11.18 -17.55 -0.20 1.46 16 29 N -0.49 -7.67 10.36 -13.25 -0.14 -7.81 16 30 C 0.09 1.24 11.18 -17.55 -0.20 1.04 16 31 C -0.17 -2.13 9.76 -39.44 -0.39 -2.51 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.61 7.23 -51.93 -0.38 0.24 16 35 H 0.09 1.29 7.18 -51.93 -0.37 0.92 16 36 H 0.06 0.95 7.01 -51.93 -0.36 0.59 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.83 7.97 -51.93 -0.41 0.41 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.11 7.69 -51.93 -0.40 0.71 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 1.15 7.89 -51.93 -0.41 0.74 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.11 3.09 4.91 -51.93 -0.26 2.83 16 47 H 0.03 0.80 7.96 -51.93 -0.41 0.39 16 48 H 0.14 2.53 7.26 -52.49 -0.38 2.15 16 49 H 0.15 2.22 8.06 -52.48 -0.42 1.80 16 50 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 51 H 0.13 1.24 8.01 -52.49 -0.42 0.82 16 LS Contribution 398.63 15.07 6.01 6.01 Total: -1.00 -34.02 398.63 -10.39 -44.40 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -8.39 Total: 3.67 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -2.41 Total: 1.06 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.65 Total: -61.32 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.85 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.03 Total: 18.02 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.02 -10.39 -44.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084609152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.560 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds