Wall clock time and date at job start Wed Apr 1 2020 01:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 112.96944 * 2 1 4 4 C 1.51998 * 113.08477 * 229.00660 * 2 1 3 5 5 H 1.08996 * 113.08941 * 104.13963 * 4 2 1 6 6 N 1.46501 * 114.58931 * 332.86379 * 4 2 1 7 7 C 1.34773 * 119.99794 * 158.14973 * 6 4 2 8 8 O 1.21279 * 120.00102 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99956 * 179.97438 * 7 6 4 10 10 C 1.50702 * 109.47094 * 179.97438 * 9 7 6 11 11 C 1.38677 * 120.41404 * 89.99968 * 10 9 7 12 12 C 1.38632 * 118.41842 * 180.02562 * 11 10 9 13 13 C 1.38223 * 119.15968 * 0.02562 * 12 11 10 14 14 N 1.31858 * 120.76655 * 359.97438 * 13 12 11 15 15 C 1.31885 * 121.72309 * 359.71076 * 14 13 12 16 16 C 1.54158 * 86.54255 * 218.40242 * 4 2 1 17 17 H 1.09001 * 114.73607 * 142.14443 * 16 4 2 18 18 C 1.53062 * 111.68423 * 272.84583 * 16 4 2 19 19 C 1.53022 * 109.40826 * 146.40385 * 18 16 4 20 20 C 1.51636 * 109.37941 * 295.89157 * 19 18 16 21 21 N 1.45887 * 110.61262 * 56.20051 * 20 19 18 22 22 C 1.36941 * 118.48250 * 142.45614 * 21 20 19 23 23 H 1.08002 * 119.99555 * 206.28807 * 22 21 20 24 24 C 1.38808 * 120.00333 * 26.00723 * 22 21 20 25 25 N 1.31617 * 119.99720 * 16.80380 * 24 22 21 26 26 Si 1.86798 * 120.00243 * 196.80875 * 24 22 21 27 27 H 1.48501 * 109.46910 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47242 * 119.99997 * 26 24 22 29 29 H 1.48499 * 109.46932 * 240.00117 * 26 24 22 30 30 C 1.45094 * 123.03186 * 322.17184 * 21 20 19 31 31 H 1.09005 * 112.25471 * 156.05368 * 30 21 20 32 32 H 1.08997 * 109.47269 * 288.51758 * 1 2 3 33 33 H 1.09003 * 109.47041 * 48.52180 * 1 2 3 34 34 H 1.09005 * 109.46659 * 168.51556 * 1 2 3 35 35 H 1.08997 * 109.47594 * 156.99096 * 3 2 1 36 36 H 1.09006 * 109.47151 * 276.98604 * 3 2 1 37 37 H 1.09004 * 109.47659 * 36.98267 * 3 2 1 38 38 H 0.97003 * 120.00004 * 338.14430 * 6 4 2 39 39 H 1.08999 * 109.47177 * 299.99877 * 9 7 6 40 40 H 1.09005 * 109.46904 * 59.99825 * 9 7 6 41 41 H 1.07997 * 120.78698 * 359.97438 * 11 10 9 42 42 H 1.07994 * 120.41596 * 179.97438 * 12 11 10 43 43 H 1.07999 * 119.61590 * 180.02562 * 13 12 11 44 44 H 1.07999 * 119.61608 * 180.31212 * 15 14 13 45 45 H 1.09004 * 109.48305 * 266.38602 * 18 16 4 46 46 H 1.09003 * 109.48529 * 26.42344 * 18 16 4 47 47 H 1.08994 * 109.55972 * 55.19198 * 19 18 16 48 48 H 1.09005 * 109.56169 * 175.40541 * 19 18 16 49 49 H 1.08999 * 107.60193 * 296.75379 * 20 19 18 50 50 H 1.09003 * 110.46029 * 177.47962 * 20 19 18 51 51 H 0.97004 * 119.99946 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1271 1.4087 0.0000 4 6 2.1260 -0.9172 -1.0554 5 1 2.5189 -0.3783 -1.9175 6 7 1.2744 -2.0486 -1.4309 7 6 1.4558 -2.6642 -2.6161 8 8 2.3236 -2.2813 -3.3718 9 6 0.5802 -3.8285 -3.0022 10 6 0.9853 -4.3318 -4.3636 11 6 1.9507 -5.3195 -4.4883 12 6 2.2922 -5.7515 -5.7606 13 6 1.6639 -5.1871 -6.8547 14 7 0.7499 -4.2495 -6.6984 15 6 0.3959 -3.8187 -5.5032 16 6 3.1989 -1.2724 -0.0069 17 1 3.5090 -2.3174 -0.0077 18 6 4.3735 -0.2919 -0.0452 19 6 4.9278 -0.1069 1.3691 20 6 3.8695 0.5363 2.2441 21 7 2.6452 -0.2571 2.2367 22 6 1.9311 -0.3667 3.4000 23 1 1.3041 -1.2296 3.5693 24 6 2.0176 0.6282 4.3640 25 7 2.5021 1.8104 4.0479 26 14 1.4465 0.2894 6.1100 27 1 0.9467 -1.1058 6.2053 28 1 2.5835 0.4735 7.0473 29 1 0.3547 1.2312 6.4652 30 6 2.1462 -0.9304 1.0523 31 1 1.5032 -1.7756 1.2980 32 1 -0.3634 0.3264 0.9744 33 1 -0.3633 0.6807 -0.7700 34 1 -0.3633 -1.0072 -0.2046 35 1 3.1397 1.3741 0.4017 36 1 2.1538 1.7920 -1.0201 37 1 1.5131 2.0636 0.6182 38 1 0.5801 -2.3547 -0.8266 39 1 0.6947 -4.6278 -2.2700 40 1 -0.4610 -3.5068 -3.0291 41 1 2.4258 -5.7414 -3.6151 42 1 3.0402 -6.5187 -5.8951 43 1 1.9239 -5.5184 -7.8492 44 1 -0.3603 -3.0527 -5.4144 45 1 5.1558 -0.6868 -0.6935 46 1 4.0326 0.6691 -0.4305 47 1 5.1898 -1.0783 1.7882 48 1 5.8143 0.5264 1.3337 49 1 3.6620 1.5259 1.8370 50 1 4.2304 0.6358 3.2678 51 1 2.5629 2.5057 4.7216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087283379.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:25 Heat of formation + Delta-G solvation = 61.292598 kcal Electronic energy + Delta-G solvation = -31083.025936 eV Core-core repulsion = 27177.293054 eV Total energy + Delta-G solvation = -3905.732882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.12201 -40.41127 -38.83869 -35.43586 -33.74797 -33.26012 -32.62123 -32.07553 -30.41176 -29.91768 -28.25015 -26.84596 -25.44567 -24.62842 -23.76405 -22.68862 -22.45056 -21.14476 -20.34095 -19.31251 -17.72320 -17.25823 -17.09926 -16.73753 -16.65565 -15.99800 -15.22023 -15.01433 -14.69436 -14.53864 -14.20814 -13.89159 -13.75701 -13.65548 -13.35824 -13.23979 -13.11663 -12.76525 -12.53102 -12.37016 -12.11319 -12.10117 -11.80594 -11.62258 -11.37379 -11.18553 -11.03353 -10.86572 -10.77573 -10.51831 -10.21713 -10.09404 -10.00193 -9.89027 -9.70527 -9.63660 -9.55280 -9.35153 -9.15872 -9.08522 -8.61219 -8.35761 -6.66477 -5.80360 -3.23876 0.89759 1.10658 2.65901 3.19813 3.33473 3.42423 3.43275 3.70427 4.20287 4.45215 4.46357 4.56835 4.76497 4.79635 4.85097 5.02173 5.06537 5.13334 5.18954 5.28524 5.35521 5.43688 5.45314 5.56215 5.59283 5.70246 5.81765 5.89546 5.93882 6.02498 6.03745 6.11592 6.17247 6.23847 6.30306 6.42281 6.45270 6.49650 6.56714 6.57211 6.62787 6.74926 6.79747 6.82759 6.97019 7.12092 7.19935 7.40535 7.63072 7.72221 7.78378 7.81344 8.30211 8.42917 9.22221 9.88084 10.31827 11.25340 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021327 B = 0.002549 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.593035 B =10982.805646 C =11258.128334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 C -0.136 4.136 4 C 0.125 3.875 5 H 0.092 0.908 6 N -0.704 5.704 7 C 0.514 3.486 8 O -0.536 6.536 9 C -0.101 4.101 10 C -0.112 4.112 11 C -0.062 4.062 12 C -0.172 4.172 13 C 0.093 3.907 14 N -0.485 5.485 15 C 0.112 3.888 16 C -0.128 4.128 17 H 0.066 0.934 18 C -0.110 4.110 19 C -0.143 4.143 20 C 0.177 3.823 21 N -0.568 5.568 22 C -0.261 4.261 23 H 0.064 0.936 24 C 0.008 3.992 25 N -0.899 5.899 26 Si 0.898 3.102 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.291 1.291 30 C 0.188 3.812 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.097 0.903 36 H 0.032 0.968 37 H 0.061 0.939 38 H 0.400 0.600 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.152 0.848 45 H 0.046 0.954 46 H 0.081 0.919 47 H 0.051 0.949 48 H 0.054 0.946 49 H 0.035 0.965 50 H 0.070 0.930 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.398 -11.615 -14.390 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 C -0.192 4.192 4 C 0.019 3.981 5 H 0.110 0.890 6 N -0.355 5.355 7 C 0.299 3.701 8 O -0.413 6.413 9 C -0.142 4.142 10 C -0.115 4.115 11 C -0.088 4.088 12 C -0.192 4.192 13 C -0.064 4.064 14 N -0.193 5.193 15 C -0.045 4.045 16 C -0.150 4.150 17 H 0.085 0.915 18 C -0.148 4.148 19 C -0.182 4.182 20 C 0.052 3.948 21 N -0.286 5.286 22 C -0.391 4.391 23 H 0.082 0.918 24 C -0.191 4.191 25 N -0.543 5.543 26 Si 0.728 3.272 27 H -0.204 1.204 28 H -0.216 1.216 29 H -0.218 1.218 30 C 0.077 3.923 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.115 0.885 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.237 0.763 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.171 0.829 44 H 0.170 0.830 45 H 0.065 0.935 46 H 0.100 0.900 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.053 0.947 50 H 0.089 0.911 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.128 -10.825 -15.549 19.065 hybrid contribution -0.257 -0.632 2.035 2.146 sum -2.385 -11.456 -13.514 17.876 Atomic orbital electron populations 1.21606 0.95385 0.99623 1.01788 1.22660 0.95141 0.96755 0.97209 1.22069 1.04049 0.93815 0.99296 1.21888 0.91997 0.87407 0.96766 0.88985 1.45782 1.37159 1.33578 1.19006 1.20387 0.84501 0.83749 0.81441 1.90724 1.34085 1.65311 1.51160 1.20629 1.00905 0.97687 0.94941 1.20299 0.98171 0.97467 0.95540 1.21459 0.94472 0.94833 0.98022 1.22104 1.01603 1.02021 0.93428 1.22744 0.92163 0.92343 0.99115 1.67682 1.13941 1.11531 1.26183 1.22596 0.97796 0.97012 0.87059 1.23242 0.95608 0.98883 0.97218 0.91508 1.21617 0.96005 0.99567 0.97579 1.21822 0.99363 1.01061 0.95917 1.20369 0.83707 0.92555 0.98172 1.43227 1.22744 1.57242 1.05355 1.19226 1.24043 1.02081 0.93728 0.91779 1.24970 1.00370 0.94699 0.99088 1.70080 1.49790 1.01981 1.32433 0.86303 0.77918 0.77611 0.85375 1.20394 1.21640 1.21829 1.21256 0.92325 0.93335 0.85353 0.91228 0.91715 0.93943 0.94050 0.88455 0.94890 0.92035 0.76347 0.87647 0.87542 0.84961 0.84815 0.82909 0.83033 0.93520 0.90043 0.93064 0.92747 0.94737 0.91136 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.95 37.16 0.33 -1.64 16 2 C -0.11 -1.94 1.30 -154.89 -0.20 -2.14 16 3 C -0.14 -2.50 7.24 37.16 0.27 -2.23 16 4 C 0.12 1.95 3.24 -67.84 -0.22 1.73 16 5 H 0.09 1.59 7.38 -51.93 -0.38 1.21 16 6 N -0.70 -8.94 4.72 -53.72 -0.25 -9.19 16 7 C 0.51 6.60 7.82 -10.99 -0.09 6.51 16 8 O -0.54 -9.21 15.67 5.56 0.09 -9.12 16 9 C -0.10 -0.87 5.86 -29.03 -0.17 -1.05 16 10 C -0.11 -1.17 4.39 -104.48 -0.46 -1.63 16 11 C -0.06 -0.60 9.86 -39.27 -0.39 -0.99 16 12 C -0.17 -1.53 10.11 -39.44 -0.40 -1.93 16 13 C 0.09 0.92 11.18 -17.55 -0.20 0.72 16 14 N -0.49 -5.84 10.36 -13.25 -0.14 -5.98 16 15 C 0.11 1.26 10.86 -17.55 -0.19 1.07 16 16 C -0.13 -2.19 4.12 -89.95 -0.37 -2.56 16 17 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 18 C -0.11 -1.88 5.17 -26.69 -0.14 -2.02 16 19 C -0.14 -2.65 5.96 -27.41 -0.16 -2.81 16 20 C 0.18 3.97 4.01 -5.06 -0.02 3.95 16 21 N -0.57 -12.97 2.69 -167.65 -0.45 -13.42 16 22 C -0.26 -6.66 9.47 -15.06 -0.14 -6.81 16 23 H 0.06 1.63 7.85 -52.49 -0.41 1.21 16 24 C 0.01 0.20 4.84 -17.43 -0.08 0.12 16 25 N -0.90 -24.58 11.06 55.49 0.61 -23.97 16 26 Si 0.90 20.88 29.58 -169.99 -5.03 15.85 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 30 C 0.19 3.56 3.45 -68.39 -0.24 3.33 16 31 H 0.07 1.30 7.92 -51.93 -0.41 0.89 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.04 0.53 5.86 -51.93 -0.30 0.22 16 35 H 0.10 1.89 1.86 -51.93 -0.10 1.80 16 36 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 37 H 0.06 1.27 8.05 -51.93 -0.42 0.85 16 38 H 0.40 4.25 6.81 -40.82 -0.28 3.97 16 39 H 0.11 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.11 0.67 8.09 -51.93 -0.42 0.25 16 41 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 1.40 4.55 -51.93 -0.24 1.16 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.03 0.83 5.61 -51.93 -0.29 0.54 16 50 H 0.07 1.79 6.53 -51.93 -0.34 1.45 16 51 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 389.37 15.07 5.87 5.87 Total: -1.00 -31.21 389.37 -9.96 -41.17 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.80 Total: 7.17 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -2.86 Total: -8.36 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.23 Total: -52.57 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.21 -9.96 -41.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087283379.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.458 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds