Wall clock time and date at job start Wed Apr 1 2020 02:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46915 * 2 1 4 4 N 1.34661 * 125.79973 * 265.18474 * 3 2 1 5 5 H 0.96997 * 124.85132 * 0.02562 * 4 3 2 6 6 C 1.36450 * 110.29858 * 180.28294 * 4 3 2 7 7 C 1.34483 * 108.85419 * 359.72813 * 6 4 3 8 8 C 1.36770 * 125.80673 * 84.99969 * 3 2 1 9 9 C 1.47265 * 126.93713 * 359.97438 * 8 3 2 10 10 O 1.21625 * 120.00231 * 7.40688 * 9 8 3 11 11 N 1.34776 * 119.99380 * 187.68124 * 9 8 3 12 12 C 1.48152 * 127.84297 * 5.86489 * 11 9 8 13 13 C 1.54730 * 104.40257 * 140.37593 * 12 11 9 14 14 H 1.08990 * 111.42872 * 264.28452 * 13 12 11 15 15 C 1.54164 * 104.96623 * 24.27074 * 13 12 11 16 16 H 1.09009 * 111.52928 * 239.35592 * 15 13 12 17 17 C 1.48148 * 127.83194 * 186.18011 * 11 9 8 18 18 C 1.53263 * 109.37423 * 116.27551 * 15 13 12 19 19 H 1.08999 * 110.52040 * 181.95186 * 18 15 13 20 20 C 1.53339 * 108.66419 * 60.51913 * 18 15 13 21 21 C 1.52917 * 109.62150 * 299.33500 * 20 18 15 22 22 C 1.52978 * 108.95207 * 141.79929 * 13 12 11 23 23 H 1.09004 * 110.15828 * 65.93952 * 22 13 12 24 24 C 1.53607 * 109.12048 * 305.52218 * 22 13 12 25 25 N 1.47569 * 106.72255 * 300.23389 * 24 22 13 26 26 C 1.36946 * 122.02226 * 180.09367 * 25 24 22 27 27 H 1.08001 * 119.99850 * 179.97438 * 26 25 24 28 28 C 1.38809 * 119.99608 * 359.97438 * 26 25 24 29 29 N 1.31618 * 120.00326 * 0.02562 * 28 26 25 30 30 Si 1.86798 * 119.99608 * 179.97438 * 28 26 25 31 31 H 1.48501 * 109.47273 * 60.00131 * 30 28 26 32 32 H 1.48504 * 109.47206 * 180.02562 * 30 28 26 33 33 H 1.48504 * 109.47347 * 300.00275 * 30 28 26 34 34 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 35 35 H 1.08995 * 109.47601 * 300.00378 * 1 2 3 36 36 H 1.09010 * 109.46895 * 60.00237 * 1 2 3 37 37 H 1.08995 * 109.47601 * 239.99622 * 2 1 3 38 38 H 1.08996 * 109.46947 * 119.99218 * 2 1 3 39 39 H 1.07997 * 125.56902 * 179.69524 * 6 4 3 40 40 H 1.07997 * 126.83047 * 180.02562 * 7 6 4 41 41 H 1.08999 * 110.41472 * 259.19550 * 12 11 9 42 42 H 1.09005 * 110.41163 * 21.65111 * 12 11 9 43 43 H 1.09001 * 110.41046 * 338.25756 * 17 11 9 44 44 H 1.09003 * 110.40330 * 100.68821 * 17 11 9 45 45 H 1.08995 * 109.44874 * 59.38938 * 20 18 15 46 46 H 1.09001 * 109.44148 * 179.32651 * 20 18 15 47 47 H 1.09005 * 109.37324 * 120.84116 * 21 20 18 48 48 H 1.08998 * 109.38443 * 240.50790 * 21 20 18 49 49 H 1.08999 * 110.00020 * 59.53897 * 24 22 13 50 50 H 1.09002 * 109.99773 * 180.83309 * 24 22 13 51 51 H 0.97002 * 119.99989 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3812 2.1330 -1.0883 5 1 2.3462 1.8045 -2.0003 6 6 2.7966 3.3807 -0.7244 7 6 2.7148 3.4931 0.6132 8 6 2.2078 2.2075 1.1050 9 6 1.9461 1.8367 2.5059 10 8 1.6583 0.6890 2.7877 11 7 2.0202 2.7703 3.4751 12 6 2.2299 4.2285 3.3184 13 6 1.2924 4.8674 4.3705 14 1 0.3385 5.1573 3.9301 15 6 1.0922 3.7758 5.4405 16 1 0.0404 3.5113 5.5502 17 6 1.9168 2.5702 4.9394 18 6 1.6777 4.2563 6.7729 19 1 1.5769 3.4839 7.5353 20 6 0.9427 5.5325 7.2001 21 6 1.1409 6.6180 6.1415 22 6 1.9931 6.0777 4.9905 23 1 2.1318 6.8564 4.2404 24 6 3.3592 5.6411 5.5404 25 7 3.0964 4.6005 6.5531 26 6 4.1074 3.9911 7.2474 27 1 3.8777 3.2335 7.9820 28 6 5.4273 4.3473 7.0070 29 7 5.7071 5.2710 6.1121 30 14 6.8062 3.5166 7.9545 31 1 6.7758 2.0551 7.6935 32 1 8.1122 4.0712 7.5161 33 1 6.6270 3.7636 9.4079 34 1 -0.3634 -1.0276 0.0005 35 1 -0.3634 0.5139 0.8899 36 1 -0.3633 0.5138 -0.8901 37 1 1.8934 -0.5139 -0.8899 38 1 1.8933 -0.5137 0.8900 39 1 3.1360 4.1518 -1.4001 40 1 2.9710 4.3579 1.2071 41 1 3.2685 4.4875 3.5241 42 1 1.9492 4.5472 2.3145 43 1 1.3982 1.6371 5.1599 44 1 2.9074 2.5720 5.3941 45 1 -0.1209 5.3200 7.3074 46 1 1.3416 5.8790 8.1535 47 1 0.1697 6.9299 5.7572 48 1 1.6422 7.4749 6.5915 49 1 3.9715 5.2328 4.7364 50 1 3.8652 6.4906 5.9992 51 1 6.6295 5.5202 5.9444 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087355681.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:50 Heat of formation + Delta-G solvation = 52.184095 kcal Electronic energy + Delta-G solvation = -32182.620764 eV Core-core repulsion = 28276.492907 eV Total energy + Delta-G solvation = -3906.127856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.25807 -40.31086 -38.12383 -35.40974 -33.59002 -33.27443 -31.77469 -31.12574 -29.92563 -29.61095 -28.22882 -26.87500 -25.31849 -24.55634 -23.17424 -21.90128 -21.44550 -21.20761 -20.70463 -20.08955 -18.24269 -17.55073 -17.24330 -15.97891 -15.75557 -15.59252 -15.01644 -14.92065 -14.67810 -14.36646 -14.19020 -14.06340 -13.92756 -13.63609 -13.13899 -12.88896 -12.66793 -12.46194 -12.24457 -12.13077 -12.08466 -11.74310 -11.67836 -11.41997 -11.38040 -11.02284 -10.97175 -10.93898 -10.76983 -10.57191 -10.46749 -10.34610 -10.12270 -9.75874 -9.62860 -9.35020 -9.17807 -9.12033 -8.73703 -8.43960 -8.22074 -7.86514 -6.79397 -5.62458 -2.98687 1.93480 2.52236 3.13198 3.44325 3.49360 3.50056 3.69009 3.91663 4.53638 4.72231 4.92446 5.02732 5.08744 5.15131 5.24535 5.31225 5.43463 5.47368 5.51369 5.55338 5.58562 5.73497 5.77367 5.81637 5.83529 5.88866 5.93454 5.99841 6.05725 6.09434 6.12642 6.20700 6.21734 6.29802 6.40466 6.47668 6.49406 6.52990 6.69079 6.72635 6.78879 6.83831 6.87461 6.92412 7.03000 7.10832 7.14170 7.45415 7.69123 7.73594 7.95435 8.24093 8.36433 8.79610 9.30513 9.91324 10.45102 11.42353 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012118 B = 0.003865 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.022932 B = 7243.514750 C = 7928.090491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 C 0.099 3.901 4 N -0.554 5.554 5 H 0.412 0.588 6 C -0.024 4.024 7 C -0.171 4.171 8 C -0.219 4.219 9 C 0.606 3.394 10 O -0.564 6.564 11 N -0.608 5.608 12 C 0.090 3.910 13 C -0.080 4.080 14 H 0.065 0.935 15 C -0.110 4.110 16 H 0.067 0.933 17 C 0.114 3.886 18 C 0.178 3.822 19 H 0.068 0.932 20 C -0.128 4.128 21 C -0.099 4.099 22 C -0.113 4.113 23 H 0.064 0.936 24 C 0.199 3.801 25 N -0.596 5.596 26 C -0.234 4.234 27 H 0.074 0.926 28 C -0.005 4.005 29 N -0.922 5.922 30 Si 0.905 3.095 31 H -0.286 1.286 32 H -0.292 1.292 33 H -0.287 1.287 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.167 0.833 40 H 0.157 0.843 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.101 0.899 45 H 0.046 0.954 46 H 0.058 0.942 47 H 0.043 0.957 48 H 0.055 0.945 49 H 0.057 0.943 50 H 0.049 0.951 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.037 -1.459 -13.715 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 C -0.018 4.018 4 N -0.150 5.150 5 H 0.248 0.752 6 C -0.151 4.151 7 C -0.195 4.195 8 C -0.229 4.229 9 C 0.397 3.603 10 O -0.446 6.446 11 N -0.339 5.339 12 C -0.032 4.032 13 C -0.099 4.099 14 H 0.083 0.917 15 C -0.131 4.131 16 H 0.085 0.915 17 C -0.008 4.008 18 C 0.069 3.931 19 H 0.086 0.914 20 C -0.168 4.168 21 C -0.137 4.137 22 C -0.133 4.133 23 H 0.082 0.918 24 C 0.075 3.925 25 N -0.320 5.320 26 C -0.363 4.363 27 H 0.092 0.908 28 C -0.201 4.201 29 N -0.570 5.570 30 Si 0.736 3.264 31 H -0.213 1.213 32 H -0.218 1.218 33 H -0.214 1.214 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.124 0.876 39 H 0.185 0.815 40 H 0.174 0.826 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.119 0.881 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.067 0.933 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.951 -2.094 -13.785 17.130 hybrid contribution 0.871 -0.212 0.021 0.897 sum -9.080 -2.306 -13.765 16.650 Atomic orbital electron populations 1.21646 0.94282 1.01807 1.01945 1.20282 0.96486 0.89335 1.03914 1.20266 1.01165 0.94637 0.85766 1.41554 1.52693 1.12265 1.08475 0.75204 1.21740 1.08584 0.88148 0.96652 1.22588 1.05364 0.97909 0.93642 1.20157 1.14667 0.95830 0.92267 1.16870 0.76514 0.83678 0.83241 1.90687 1.51137 1.19359 1.83383 1.48650 1.70423 1.07913 1.06933 1.23195 1.01589 0.79542 0.98917 1.21946 0.97399 0.95500 0.95084 0.91686 1.22654 0.98209 0.94735 0.97539 0.91506 1.22537 1.02445 0.97254 0.78578 1.20541 0.85428 0.94030 0.93070 0.91411 1.22025 0.98546 0.97445 0.98753 1.21322 0.98175 0.97948 0.96246 1.21814 0.98885 0.95766 0.96806 0.91756 1.21252 0.88442 0.91473 0.91317 1.44549 0.99208 1.43771 1.44484 1.19212 0.85647 1.15889 1.15523 0.90845 1.24722 0.97056 0.99041 0.99236 1.69995 1.17601 1.33470 1.35961 0.86304 0.81836 0.78908 0.79340 1.21291 1.21784 1.21374 0.92181 0.91786 0.93538 0.91803 0.87609 0.81534 0.82595 0.88874 0.90351 0.91804 0.88074 0.93517 0.92284 0.93786 0.92664 0.92545 0.93270 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.89 37.16 0.37 -1.15 16 2 C -0.06 -0.73 5.88 -27.88 -0.16 -0.89 16 3 C 0.10 1.31 6.43 -81.88 -0.53 0.79 16 4 N -0.55 -5.55 5.90 -9.11 -0.05 -5.61 16 5 H 0.41 2.62 8.96 -40.82 -0.37 2.25 16 6 C -0.02 -0.26 11.89 -16.82 -0.20 -0.46 16 7 C -0.17 -2.37 9.32 -37.50 -0.35 -2.72 16 8 C -0.22 -3.54 6.20 -103.35 -0.64 -4.18 16 9 C 0.61 11.61 7.89 -12.59 -0.10 11.51 16 10 O -0.56 -11.91 15.16 5.26 0.08 -11.83 16 11 N -0.61 -11.47 3.31 -170.38 -0.56 -12.04 16 12 C 0.09 1.53 5.06 -2.22 -0.01 1.52 16 13 C -0.08 -1.32 3.14 -89.11 -0.28 -1.60 16 14 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 15 C -0.11 -1.94 3.17 -89.13 -0.28 -2.22 16 16 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 17 C 0.11 2.24 6.44 -2.39 -0.02 2.22 16 18 C 0.18 3.42 3.02 -67.00 -0.20 3.22 16 19 H 0.07 1.31 8.01 -51.93 -0.42 0.89 16 20 C -0.13 -2.19 5.84 -26.60 -0.16 -2.35 16 21 C -0.10 -1.63 5.65 -26.74 -0.15 -1.78 16 22 C -0.11 -1.98 2.88 -90.28 -0.26 -2.24 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 24 C 0.20 4.43 4.01 -3.14 -0.01 4.41 16 25 N -0.60 -13.71 1.96 -163.23 -0.32 -14.03 16 26 C -0.23 -6.09 9.25 -15.06 -0.14 -6.23 16 27 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 28 C 0.00 -0.13 5.47 -17.43 -0.10 -0.22 16 29 N -0.92 -25.62 9.76 55.49 0.54 -25.08 16 30 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 31 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 32 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 33 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.11 1.52 6.61 -51.93 -0.34 1.18 16 39 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.16 2.10 5.35 -52.49 -0.28 1.82 16 41 H 0.09 1.82 5.28 -51.93 -0.27 1.55 16 42 H 0.08 1.17 4.84 -51.93 -0.25 0.92 16 43 H 0.06 1.25 7.84 -51.93 -0.41 0.84 16 44 H 0.10 2.33 6.31 -51.93 -0.33 2.00 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.06 1.39 4.85 -51.93 -0.25 1.14 16 50 H 0.05 1.26 7.22 -51.93 -0.37 0.88 16 51 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -30.93 377.40 -10.78 -41.71 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -7.91 Total: 6.72 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -3.22 Total: -2.37 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.40 Total: -56.75 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.93 -10.78 -41.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087355681.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.897 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds