Wall clock time and date at job start Wed Apr 1 2020 02:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47224 * 2 1 4 4 N 1.34656 * 125.80322 * 265.02614 * 3 2 1 5 5 H 0.97003 * 124.85086 * 359.97438 * 4 3 2 6 6 C 1.36445 * 110.29769 * 179.97438 * 4 3 2 7 7 C 1.34485 * 108.85600 * 359.74862 * 6 4 3 8 8 C 1.36766 * 125.79465 * 84.99988 * 3 2 1 9 9 C 1.47263 * 126.94769 * 359.97438 * 8 3 2 10 10 O 1.21626 * 119.99936 * 359.97438 * 9 8 3 11 11 N 1.34778 * 119.99893 * 180.02562 * 9 8 3 12 12 C 1.52777 * 126.52309 * 181.55440 * 11 9 8 13 13 C 1.49339 * 102.05505 * 203.69978 * 12 11 9 14 14 H 1.09005 * 105.94735 * 63.63361 * 13 12 11 15 15 C 1.56654 * 100.54388 * 316.05603 * 13 12 11 16 16 H 1.09001 * 109.22627 * 291.88033 * 15 13 12 17 17 C 1.49133 * 125.88225 * 359.97438 * 11 9 8 18 18 C 1.51954 * 103.67793 * 174.89915 * 15 13 12 19 19 H 1.09005 * 113.75106 * 207.76491 * 18 15 13 20 20 C 1.56082 * 103.62428 * 83.40346 * 18 15 13 21 21 C 1.53903 * 106.97136 * 322.06433 * 20 18 15 22 22 C 1.49093 * 130.13521 * 191.84343 * 13 12 11 23 23 H 1.09002 * 113.01405 * 329.25706 * 22 13 12 24 24 C 1.56828 * 103.17071 * 205.59061 * 22 13 12 25 25 N 1.49075 * 103.46954 * 323.28451 * 24 22 13 26 26 C 1.36939 * 122.59737 * 144.11137 * 25 24 22 27 27 H 1.07998 * 119.99645 * 324.41723 * 26 25 24 28 28 C 1.38810 * 120.00141 * 144.68290 * 26 25 24 29 29 N 1.31620 * 119.99763 * 159.57154 * 28 26 25 30 30 Si 1.86802 * 120.00144 * 339.57604 * 28 26 25 31 31 H 1.48500 * 109.47106 * 95.69582 * 30 28 26 32 32 H 1.48499 * 109.47178 * 215.69984 * 30 28 26 33 33 H 1.48501 * 109.47048 * 335.69750 * 30 28 26 34 34 H 1.08998 * 109.47171 * 299.99745 * 1 2 3 35 35 H 1.08998 * 109.46914 * 59.99745 * 1 2 3 36 36 H 1.09000 * 109.46822 * 179.97438 * 1 2 3 37 37 H 1.08998 * 109.47171 * 240.00255 * 2 1 3 38 38 H 1.08998 * 109.47646 * 120.00118 * 2 1 3 39 39 H 1.07992 * 125.57161 * 179.97438 * 6 4 3 40 40 H 1.08003 * 126.83527 * 180.24802 * 7 6 4 41 41 H 1.09009 * 111.58296 * 85.29539 * 12 11 9 42 42 H 1.09001 * 110.32505 * 321.54167 * 12 11 9 43 43 H 1.08995 * 110.29725 * 67.63514 * 17 11 9 44 44 H 1.08999 * 110.37520 * 305.55036 * 17 11 9 45 45 H 1.09001 * 109.95541 * 81.43359 * 20 18 15 46 46 H 1.09008 * 109.95162 * 202.70171 * 20 18 15 47 47 H 1.08999 * 109.53659 * 86.12135 * 21 20 18 48 48 H 1.08999 * 109.53601 * 206.37520 * 21 20 18 49 49 H 1.09005 * 110.72793 * 204.78322 * 24 22 13 50 50 H 1.09003 * 110.59697 * 81.72508 * 24 22 13 51 51 H 0.97000 * 119.99898 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3842 2.1320 -1.0880 5 1 2.3522 1.8024 -1.9998 6 6 2.7921 3.3823 -0.7247 7 6 2.7030 3.4972 0.6123 8 6 2.2078 2.2073 1.1051 9 6 1.9462 1.8364 2.5061 10 8 1.5277 0.7261 2.7732 11 7 2.1693 2.7277 3.4921 12 6 1.9820 2.4925 4.9899 13 6 1.7848 3.8816 5.5015 14 1 0.8642 4.2420 5.0425 15 6 2.9090 4.6387 4.7160 16 1 3.8833 4.3093 5.0770 17 6 2.6780 4.1184 3.3146 18 6 2.6886 6.0954 5.0879 19 1 3.0216 6.7987 4.3244 20 6 3.4293 6.2424 6.4538 21 6 3.1896 4.9395 7.2373 22 6 1.7803 4.3993 6.8997 23 1 1.4204 3.6681 7.6236 24 6 0.8949 5.6899 6.8001 25 7 1.2556 6.2565 5.4692 26 6 0.3432 6.8816 4.6618 27 1 -0.6775 6.5305 4.6277 28 6 0.7316 7.9630 3.8829 29 7 0.0147 8.3106 2.8353 30 14 2.2718 8.9247 4.3216 31 1 3.4176 8.4134 3.5275 32 1 2.0609 10.3628 4.0171 33 1 2.5611 8.7625 5.7691 34 1 -0.3633 0.5138 0.8900 35 1 -0.3633 0.5139 -0.8900 36 1 -0.3633 -1.0277 -0.0005 37 1 1.8933 -0.5138 -0.8900 38 1 1.8934 -0.5138 0.8899 39 1 3.1279 4.1547 -1.4006 40 1 2.9492 4.3656 1.2054 41 1 2.8649 2.0360 5.4377 42 1 1.0960 1.8837 5.1697 43 1 1.9357 4.7300 2.8019 44 1 3.6133 4.1118 2.7549 45 1 4.4968 6.3838 6.2848 46 1 3.0240 7.0893 7.0076 47 1 3.9402 4.2012 6.9552 48 1 3.2569 5.1396 8.3066 49 1 1.1449 6.3916 7.5959 50 1 -0.1637 5.4321 6.8328 51 1 0.2859 9.0665 2.2912 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087355682.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:55 Heat of formation + Delta-G solvation = 83.791696 kcal Electronic energy + Delta-G solvation = -32232.030495 eV Core-core repulsion = 28327.273247 eV Total energy + Delta-G solvation = -3904.757248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.26933 -40.83196 -38.28949 -35.77174 -33.54646 -33.14673 -31.53866 -30.96178 -30.68821 -29.79635 -28.14359 -27.50603 -25.32931 -24.45490 -23.21256 -21.74914 -21.63124 -21.24355 -20.49457 -20.26501 -18.27805 -17.67432 -17.33675 -16.75614 -15.96792 -15.81858 -15.33183 -14.87700 -14.72348 -14.39658 -14.13638 -13.93865 -13.83617 -13.62325 -13.18514 -13.15175 -12.90863 -12.67422 -12.40575 -12.25066 -12.05041 -11.99246 -11.79234 -11.64696 -11.49359 -11.34309 -11.19201 -11.06013 -10.88532 -10.76780 -10.56520 -10.37767 -10.26212 -10.05246 -9.62859 -9.40939 -9.19524 -9.14953 -8.68006 -8.50024 -8.28550 -7.95301 -6.84021 -5.97613 -3.37768 1.95861 2.61698 3.10942 3.27479 3.44256 3.46240 3.49838 3.91312 4.50728 4.65070 4.70687 4.77244 4.99789 5.12392 5.14813 5.23280 5.30867 5.36973 5.39771 5.40765 5.55002 5.56901 5.59042 5.62141 5.72141 5.75666 5.85060 5.89886 5.96148 5.97806 6.04425 6.11193 6.14415 6.16314 6.24050 6.27589 6.31942 6.33975 6.35045 6.50055 6.55536 6.63580 6.68572 6.74362 6.83131 6.91384 6.97262 7.08890 7.16955 7.52238 7.92089 8.03559 8.33656 8.69795 8.86504 9.67723 10.16521 11.18262 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012446 B = 0.004275 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.171733 B = 6548.392799 C = 7749.043714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C 0.100 3.900 4 N -0.554 5.554 5 H 0.412 0.588 6 C -0.024 4.024 7 C -0.168 4.168 8 C -0.223 4.223 9 C 0.607 3.393 10 O -0.565 6.565 11 N -0.618 5.618 12 C 0.141 3.859 13 C -0.124 4.124 14 H 0.100 0.900 15 C -0.126 4.126 16 H 0.068 0.932 17 C 0.117 3.883 18 C 0.170 3.830 19 H 0.084 0.916 20 C -0.138 4.138 21 C -0.110 4.110 22 C -0.077 4.077 23 H 0.081 0.919 24 C 0.142 3.858 25 N -0.605 5.605 26 C -0.254 4.254 27 H 0.079 0.921 28 C 0.033 3.967 29 N -0.903 5.903 30 Si 0.872 3.128 31 H -0.287 1.287 32 H -0.304 1.304 33 H -0.263 1.263 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.168 0.832 40 H 0.157 0.843 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.072 0.928 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.032 0.968 50 H 0.056 0.944 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.885 -11.948 -2.631 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.096 4.096 3 C -0.018 4.018 4 N -0.149 5.149 5 H 0.248 0.752 6 C -0.151 4.151 7 C -0.192 4.192 8 C -0.233 4.233 9 C 0.399 3.601 10 O -0.446 6.446 11 N -0.352 5.352 12 C 0.021 3.979 13 C -0.143 4.143 14 H 0.118 0.882 15 C -0.147 4.147 16 H 0.086 0.914 17 C -0.004 4.004 18 C 0.063 3.937 19 H 0.102 0.898 20 C -0.176 4.176 21 C -0.147 4.147 22 C -0.097 4.097 23 H 0.100 0.900 24 C 0.018 3.982 25 N -0.330 5.330 26 C -0.383 4.383 27 H 0.097 0.903 28 C -0.167 4.167 29 N -0.545 5.545 30 Si 0.703 3.297 31 H -0.215 1.215 32 H -0.233 1.233 33 H -0.188 1.188 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.185 0.815 40 H 0.174 0.826 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.050 0.950 50 H 0.075 0.925 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.549 -12.421 -2.849 14.812 hybrid contribution 0.993 0.925 -0.519 1.453 sum 8.542 -11.496 -3.368 14.713 Atomic orbital electron populations 1.21652 0.94100 1.01732 1.02327 1.20236 0.96689 0.89216 1.03465 1.20253 1.00958 0.94771 0.85783 1.41554 1.52660 1.12210 1.08475 0.75204 1.21759 1.08769 0.87834 0.96714 1.22701 1.04865 0.97734 0.93854 1.20084 1.15275 0.95897 0.92073 1.16939 0.76800 0.83080 0.83323 1.90686 1.48516 1.21312 1.84086 1.50108 1.65507 1.13470 1.06089 1.21489 1.00740 0.96778 0.78904 1.21102 1.03202 0.93244 0.96780 0.88158 1.22819 0.98539 0.99046 0.94318 0.91383 1.21823 0.98820 0.82094 0.97706 1.21565 0.85527 0.92489 0.94075 0.89837 1.22920 0.99203 0.97936 0.97581 1.22063 0.96806 0.96916 0.98941 1.21502 0.96389 0.97413 0.94402 0.90030 1.22378 0.96660 0.91462 0.87722 1.45652 1.04973 1.67084 1.15251 1.18750 0.93317 1.08189 1.18025 0.90300 1.25409 0.97337 0.96876 0.97052 1.69850 1.40556 1.28766 1.15348 0.87020 0.83543 0.79407 0.79742 1.21532 1.23257 1.18753 0.91463 0.93453 0.92271 0.91931 0.88029 0.81493 0.82587 0.92083 0.90782 0.89702 0.91655 0.92675 0.90962 0.92502 0.92600 0.94964 0.92511 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.89 37.16 0.37 -1.31 16 2 C -0.06 -0.70 5.79 -27.88 -0.16 -0.86 16 3 C 0.10 1.39 6.43 -81.88 -0.53 0.86 16 4 N -0.55 -6.15 5.90 -9.11 -0.05 -6.21 16 5 H 0.41 3.04 8.96 -40.82 -0.37 2.67 16 6 C -0.02 -0.30 11.89 -16.83 -0.20 -0.50 16 7 C -0.17 -2.59 9.46 -37.49 -0.35 -2.94 16 8 C -0.22 -3.74 6.23 -103.35 -0.64 -4.38 16 9 C 0.61 11.35 7.89 -12.59 -0.10 11.26 16 10 O -0.56 -11.33 15.17 5.25 0.08 -11.25 16 11 N -0.62 -11.07 3.51 -170.51 -0.60 -11.67 16 12 C 0.14 2.30 6.98 -2.26 -0.02 2.29 16 13 C -0.12 -2.08 2.30 -92.37 -0.21 -2.30 16 14 H 0.10 2.09 6.06 -51.93 -0.31 1.77 16 15 C -0.13 -2.17 2.31 -90.06 -0.21 -2.38 16 16 H 0.07 1.07 6.35 -51.93 -0.33 0.74 16 17 C 0.12 2.07 4.71 -3.46 -0.02 2.05 16 18 C 0.17 3.34 2.84 -65.34 -0.19 3.16 16 19 H 0.08 1.83 4.00 -51.93 -0.21 1.62 16 20 C -0.14 -2.31 5.08 -24.61 -0.13 -2.44 16 21 C -0.11 -1.55 5.30 -25.39 -0.13 -1.69 16 22 C -0.08 -1.17 4.25 -89.60 -0.38 -1.55 16 23 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 24 C 0.14 2.62 5.84 -0.55 0.00 2.61 16 25 N -0.60 -13.26 1.39 -157.91 -0.22 -13.48 16 26 C -0.25 -6.77 10.14 -15.06 -0.15 -6.92 16 27 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 28 C 0.03 0.92 5.39 -17.43 -0.09 0.82 16 29 N -0.90 -26.78 13.97 55.49 0.78 -26.01 16 30 Si 0.87 21.17 24.75 -169.99 -4.21 16.96 16 31 H -0.29 -6.71 6.64 56.52 0.38 -6.34 16 32 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 33 H -0.26 -6.14 5.95 56.52 0.34 -5.81 16 34 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 1.41 6.75 -51.93 -0.35 1.06 16 39 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.16 2.45 4.79 -52.48 -0.25 2.20 16 41 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.08 1.75 7.45 -51.93 -0.39 1.36 16 44 H 0.07 1.04 6.48 -51.93 -0.34 0.70 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 1.32 6.43 -51.92 -0.33 0.99 16 47 H 0.06 0.75 6.96 -51.93 -0.36 0.39 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.03 0.59 7.20 -51.93 -0.37 0.21 16 50 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 51 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -31.96 374.22 -9.63 -41.59 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -7.90 Total: 8.63 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -3.15 Total: -4.21 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.10 Total: -57.36 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.21 Total: 16.96 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.96 -9.63 -41.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087355682.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.385 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds