Wall clock time and date at job start Wed Apr 1 2020 02:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47623 * 2 1 4 4 N 1.34657 * 125.80245 * 265.03013 * 3 2 1 5 5 H 0.97003 * 124.84812 * 359.97438 * 4 3 2 6 6 C 1.36444 * 110.29761 * 179.97438 * 4 3 2 7 7 C 1.34482 * 108.85873 * 359.74932 * 6 4 3 8 8 C 1.36761 * 125.79918 * 84.99950 * 3 2 1 9 9 C 1.47262 * 126.94647 * 359.97438 * 8 3 2 10 10 O 1.21632 * 119.99549 * 0.02562 * 9 8 3 11 11 N 1.34775 * 120.00402 * 180.02562 * 9 8 3 12 12 C 1.49221 * 125.92959 * 180.02562 * 11 9 8 13 13 C 1.54231 * 103.55870 * 153.54882 * 12 11 9 14 14 H 1.09001 * 113.05459 * 282.82796 * 13 12 11 15 15 C 1.56363 * 96.71386 * 42.30170 * 13 12 11 16 16 H 1.09001 * 97.66319 * 59.22628 * 15 13 12 17 17 C 1.47542 * 105.20970 * 314.63626 * 15 13 12 18 18 C 1.48716 * 109.59433 * 165.11208 * 15 13 12 19 19 H 1.09006 * 114.45180 * 153.41068 * 18 15 13 20 20 C 1.55593 * 107.84361 * 24.89282 * 18 15 13 21 21 C 1.53765 * 108.70586 * 289.90413 * 20 18 15 22 22 C 1.52773 * 115.52776 * 149.43109 * 13 12 11 23 23 H 1.09002 * 113.35338 * 50.78884 * 22 13 12 24 24 C 1.54346 * 109.73338 * 284.00491 * 22 13 12 25 25 N 1.49664 * 107.14876 * 287.73110 * 24 22 13 26 26 C 1.36938 * 124.52856 * 216.38065 * 25 24 22 27 27 H 1.08001 * 119.99812 * 157.78229 * 26 25 24 28 28 C 1.38804 * 120.00020 * 337.77978 * 26 25 24 29 29 N 1.31622 * 120.00116 * 161.94375 * 28 26 25 30 30 Si 1.86803 * 120.00203 * 341.94077 * 28 26 25 31 31 H 1.48504 * 109.46984 * 85.73500 * 30 28 26 32 32 H 1.48496 * 109.47358 * 205.73651 * 30 28 26 33 33 H 1.48501 * 109.46999 * 325.74108 * 30 28 26 34 34 H 1.09004 * 109.46615 * 299.99867 * 1 2 3 35 35 H 1.09002 * 109.46825 * 59.99732 * 1 2 3 36 36 H 1.08996 * 109.47284 * 180.02562 * 1 2 3 37 37 H 1.09000 * 109.47002 * 239.99854 * 2 1 3 38 38 H 1.09000 * 109.47312 * 120.00465 * 2 1 3 39 39 H 1.07997 * 125.57003 * 179.97438 * 6 4 3 40 40 H 1.07994 * 126.83720 * 180.25271 * 7 6 4 41 41 H 1.09003 * 110.62728 * 272.11100 * 12 11 9 42 42 H 1.08997 * 110.63115 * 34.98198 * 12 11 9 43 43 H 1.09001 * 110.49015 * 272.05687 * 17 15 13 44 44 H 1.08992 * 110.49385 * 149.39009 * 17 15 13 45 45 H 1.09006 * 109.59531 * 49.66698 * 20 18 15 46 46 H 1.08993 * 109.60498 * 170.13392 * 20 18 15 47 47 H 1.09007 * 109.78879 * 153.34126 * 21 20 18 48 48 H 1.08996 * 109.78565 * 274.16617 * 21 20 18 49 49 H 1.08996 * 110.00155 * 46.63413 * 24 22 13 50 50 H 1.08998 * 109.99923 * 167.93790 * 24 22 13 51 51 H 0.97002 * 120.00351 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.3843 2.1319 -1.0880 5 1 2.3523 1.8023 -1.9998 6 6 2.7924 3.3822 -0.7247 7 6 2.7034 3.4971 0.6122 8 6 2.2081 2.2072 1.1050 9 6 1.9464 1.8365 2.5060 10 8 1.5287 0.7258 2.7732 11 7 2.1696 2.7278 3.4920 12 6 1.9516 2.4939 4.9495 13 6 2.9428 3.4644 5.6236 14 1 3.9723 3.1070 5.6011 15 6 2.6764 4.6824 4.6800 16 1 1.6098 4.7890 4.8778 17 6 2.6778 4.1222 3.3151 18 6 3.2337 5.9183 5.2914 19 1 3.5114 6.6908 4.5742 20 6 4.3783 5.4977 6.2578 21 6 3.7609 4.7882 7.4742 22 6 2.5109 4.0060 6.9853 23 1 2.2015 3.2268 7.6819 24 6 1.4316 5.0930 6.7953 25 7 2.1160 6.3020 6.2387 26 6 1.7919 7.5935 6.5584 27 1 2.5173 8.3819 6.4218 28 6 0.5312 7.8893 7.0580 29 7 0.3237 9.0247 7.6907 30 14 -0.8713 6.6761 6.8324 31 1 -0.8434 5.6774 7.9311 32 1 -2.1650 7.4046 6.8583 33 1 -0.7201 5.9817 5.5284 34 1 -0.3633 0.5138 0.8901 35 1 -0.3633 0.5139 -0.8900 36 1 -0.3633 -1.0276 0.0005 37 1 1.8933 -0.5139 -0.8900 38 1 1.8934 -0.5139 0.8899 39 1 3.1282 4.1546 -1.4007 40 1 2.9496 4.3654 1.2053 41 1 0.9262 2.7370 5.2283 42 1 2.1854 1.4622 5.2122 43 1 3.6889 4.1112 2.9082 44 1 2.0111 4.6921 2.6680 45 1 5.0588 4.8181 5.7446 46 1 4.9220 6.3828 6.5879 47 1 4.4847 4.0956 7.9041 48 1 3.4662 5.5254 8.2210 49 1 0.6747 4.7477 6.0910 50 1 0.9687 5.3301 7.7532 51 1 -0.5573 9.2313 8.0402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087355683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:59 Heat of formation + Delta-G solvation = 98.437068 kcal Electronic energy + Delta-G solvation = -31804.378589 eV Core-core repulsion = 27900.256412 eV Total energy + Delta-G solvation = -3904.122177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.59088 -41.13214 -38.55410 -36.00466 -33.74596 -33.08723 -31.67042 -31.15168 -30.44541 -30.07706 -28.40071 -27.77406 -25.85662 -24.31522 -23.26121 -22.25114 -21.56609 -21.38091 -20.75609 -20.29247 -18.52624 -17.69633 -17.46573 -16.84264 -16.06535 -16.02401 -15.46804 -15.12733 -14.85172 -14.58134 -14.29926 -14.26562 -14.06425 -13.83522 -13.38926 -13.22972 -13.08179 -12.61450 -12.57807 -12.40012 -12.22798 -11.95276 -11.80526 -11.72283 -11.57906 -11.51591 -11.37934 -11.16222 -11.07437 -10.90097 -10.66567 -10.24917 -10.14989 -9.82432 -9.68216 -9.46519 -9.39619 -9.30449 -8.94318 -8.54722 -8.52134 -8.20647 -6.99889 -5.91890 -3.24612 1.71574 2.34576 2.90146 3.23995 3.32644 3.48000 3.49581 3.65276 4.44886 4.53489 4.55736 4.58247 4.77805 4.87300 4.90925 5.00825 5.15872 5.18777 5.32945 5.36537 5.40256 5.40978 5.45708 5.59480 5.62992 5.66894 5.68914 5.74440 5.75328 5.79175 5.86916 5.97174 6.01679 6.08298 6.08737 6.11421 6.17145 6.26102 6.31185 6.38113 6.43849 6.55755 6.63904 6.65493 6.75553 6.83160 6.85848 6.96651 7.00933 7.27864 7.67715 7.76077 8.32449 8.45442 8.81163 9.69459 10.15383 11.24808 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.003354 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.365336 B = 8346.805113 C = 8542.710700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.060 4.060 3 C 0.104 3.896 4 N -0.553 5.553 5 H 0.413 0.587 6 C -0.022 4.022 7 C -0.173 4.173 8 C -0.226 4.226 9 C 0.605 3.395 10 O -0.558 6.558 11 N -0.617 5.617 12 C 0.113 3.887 13 C -0.096 4.096 14 H 0.092 0.908 15 C -0.176 4.176 16 H 0.087 0.913 17 C 0.141 3.859 18 C 0.197 3.803 19 H 0.090 0.910 20 C -0.122 4.122 21 C -0.096 4.096 22 C -0.098 4.098 23 H 0.082 0.918 24 C 0.116 3.884 25 N -0.613 5.613 26 C -0.238 4.238 27 H 0.090 0.910 28 C 0.020 3.980 29 N -0.914 5.914 30 Si 0.884 3.116 31 H -0.287 1.287 32 H -0.305 1.305 33 H -0.275 1.275 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.169 0.831 40 H 0.157 0.843 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.049 0.951 46 H 0.058 0.942 47 H 0.045 0.955 48 H 0.072 0.928 49 H 0.030 0.970 50 H 0.071 0.929 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.013 -15.061 -15.908 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.098 4.098 3 C -0.014 4.014 4 N -0.148 5.148 5 H 0.250 0.750 6 C -0.149 4.149 7 C -0.197 4.197 8 C -0.236 4.236 9 C 0.397 3.603 10 O -0.439 6.439 11 N -0.351 5.351 12 C -0.008 4.008 13 C -0.115 4.115 14 H 0.110 0.890 15 C -0.195 4.195 16 H 0.105 0.895 17 C 0.018 3.982 18 C 0.091 3.909 19 H 0.108 0.892 20 C -0.161 4.161 21 C -0.133 4.133 22 C -0.118 4.118 23 H 0.100 0.900 24 C -0.008 4.008 25 N -0.340 5.340 26 C -0.365 4.365 27 H 0.108 0.892 28 C -0.178 4.178 29 N -0.559 5.559 30 Si 0.715 3.285 31 H -0.215 1.215 32 H -0.233 1.233 33 H -0.201 1.201 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.186 0.814 40 H 0.174 0.826 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.091 0.909 49 H 0.047 0.953 50 H 0.089 0.911 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.585 -15.500 -15.843 23.122 hybrid contribution -1.042 -0.486 -0.533 1.267 sum 5.543 -15.987 -16.376 23.547 Atomic orbital electron populations 1.21652 0.94068 1.01931 1.02156 1.20266 0.96691 0.89176 1.03712 1.20291 1.00593 0.94762 0.85759 1.41587 1.52450 1.12203 1.08600 0.75046 1.21778 1.08508 0.87923 0.96701 1.22651 1.05405 0.97802 0.93806 1.20072 1.15504 0.95991 0.91999 1.16980 0.76802 0.83145 0.83393 1.90716 1.48042 1.21133 1.83998 1.49376 1.65488 1.13661 1.06566 1.22349 0.99251 0.99965 0.79266 1.22822 0.98597 0.94668 0.95378 0.88953 1.21809 1.07311 0.96746 0.93638 0.89467 1.20771 0.98848 0.81669 0.96867 1.20747 0.88461 0.91613 0.90045 0.89214 1.22593 0.97626 0.99197 0.96664 1.21915 0.95214 0.98159 0.98050 1.22181 0.97716 0.96835 0.95110 0.90004 1.22117 0.93781 0.87415 0.97511 1.46695 1.38434 1.01241 1.47627 1.18790 0.96882 0.82923 1.37934 0.89193 1.25111 0.97142 0.95891 0.99692 1.69795 1.22792 1.24424 1.38860 0.87021 0.82744 0.80325 0.78419 1.21496 1.23337 1.20109 0.91602 0.93456 0.92112 0.91731 0.87912 0.81405 0.82595 0.91418 0.90583 0.91385 0.90677 0.93267 0.92308 0.93621 0.90926 0.95269 0.91111 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.90 37.16 0.37 -1.03 16 2 C -0.06 -0.60 5.79 -27.88 -0.16 -0.77 16 3 C 0.10 1.18 6.43 -81.89 -0.53 0.65 16 4 N -0.55 -4.61 5.90 -9.11 -0.05 -4.67 16 5 H 0.41 2.02 8.96 -40.82 -0.37 1.65 16 6 C -0.02 -0.20 11.89 -16.83 -0.20 -0.40 16 7 C -0.17 -1.99 9.48 -37.50 -0.36 -2.35 16 8 C -0.23 -3.10 6.23 -103.35 -0.64 -3.75 16 9 C 0.61 9.81 7.86 -12.59 -0.10 9.71 16 10 O -0.56 -10.13 15.04 5.25 0.08 -10.05 16 11 N -0.62 -9.57 3.42 -172.65 -0.59 -10.16 16 12 C 0.11 1.74 6.23 -1.89 -0.01 1.73 16 13 C -0.10 -1.41 2.84 -88.29 -0.25 -1.66 16 14 H 0.09 1.28 7.10 -51.93 -0.37 0.91 16 15 C -0.18 -2.80 2.65 -93.54 -0.25 -3.05 16 16 H 0.09 1.68 3.64 -51.93 -0.19 1.50 16 17 C 0.14 1.97 4.78 -5.03 -0.02 1.95 16 18 C 0.20 3.48 4.70 -65.84 -0.31 3.17 16 19 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 20 C -0.12 -1.92 5.60 -24.95 -0.14 -2.06 16 21 C -0.10 -1.55 5.48 -25.08 -0.14 -1.69 16 22 C -0.10 -1.61 3.80 -88.78 -0.34 -1.94 16 23 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 24 C 0.12 2.39 3.20 -1.57 -0.01 2.39 16 25 N -0.61 -13.64 2.06 -159.15 -0.33 -13.96 16 26 C -0.24 -6.39 10.55 -15.06 -0.16 -6.54 16 27 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 28 C 0.02 0.56 5.42 -17.43 -0.09 0.47 16 29 N -0.91 -27.84 13.97 55.49 0.78 -27.06 16 30 Si 0.88 22.47 24.25 -169.99 -4.12 18.35 16 31 H -0.29 -7.06 6.37 56.52 0.36 -6.70 16 32 H -0.31 -7.99 7.11 56.52 0.40 -7.59 16 33 H -0.28 -6.92 6.44 56.52 0.36 -6.56 16 34 H 0.06 0.84 7.96 -51.93 -0.41 0.42 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.10 1.24 6.75 -51.93 -0.35 0.89 16 39 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.16 1.68 4.78 -52.49 -0.25 1.43 16 41 H 0.07 1.12 7.29 -51.93 -0.38 0.74 16 42 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 43 H 0.07 0.83 7.24 -51.93 -0.38 0.46 16 44 H 0.08 1.05 6.80 -51.93 -0.35 0.70 16 45 H 0.05 0.67 7.20 -51.93 -0.37 0.30 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.07 1.38 7.80 -51.93 -0.41 0.97 16 49 H 0.03 0.64 3.92 -51.93 -0.20 0.44 16 50 H 0.07 1.62 5.51 -51.93 -0.29 1.33 16 51 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -33.02 371.81 -9.72 -42.74 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.75 Total: 4.38 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -3.34 Total: -5.17 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.20 Total: -55.85 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.12 Total: 18.35 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.02 -9.72 -42.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087355683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.177 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds