Wall clock time and date at job start Wed Apr 1 2020 02:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47059 * 2 1 4 4 N 1.46498 * 109.46068 * 300.51681 * 3 2 1 5 5 C 1.36933 * 120.00164 * 304.82848 * 4 3 2 6 6 H 1.07998 * 119.99979 * 4.98226 * 5 4 3 7 7 C 1.38813 * 119.99862 * 184.98326 * 5 4 3 8 8 N 1.31621 * 120.00251 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99779 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47044 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46887 * 120.00011 * 9 7 5 12 12 H 1.48499 * 109.46993 * 239.99671 * 9 7 5 13 13 C 1.53041 * 109.45978 * 180.54581 * 3 2 1 14 14 C 1.53190 * 109.31152 * 178.62740 * 13 3 2 15 15 N 1.46927 * 108.77757 * 54.63715 * 14 13 3 16 16 C 1.34771 * 120.63412 * 126.36541 * 15 14 13 17 17 O 1.21290 * 120.00037 * 354.05937 * 16 15 14 18 18 C 1.50699 * 120.00212 * 174.32657 * 16 15 14 19 19 C 1.50701 * 115.55441 * 303.86957 * 18 16 15 20 20 C 1.38229 * 119.61419 * 315.11007 * 19 18 16 21 21 C 1.38627 * 119.15394 * 179.75150 * 20 19 18 22 22 C 1.38664 * 118.42604 * 0.50883 * 21 20 19 23 23 C 1.38187 * 119.16276 * 359.72885 * 22 21 20 24 24 N 1.31851 * 119.61753 * 135.37960 * 19 18 16 25 25 C 1.53000 * 117.49780 * 158.19494 * 18 16 15 26 26 C 1.53002 * 117.49590 * 89.53892 * 18 16 15 27 27 C 1.46924 * 118.73498 * 306.64472 * 15 14 13 28 28 C 1.52757 * 109.01238 * 53.30924 * 27 15 14 29 29 H 1.08998 * 109.47067 * 184.79913 * 1 2 3 30 30 H 1.09000 * 109.47275 * 304.80208 * 1 2 3 31 31 H 1.08998 * 109.47154 * 64.80013 * 1 2 3 32 32 H 1.09003 * 109.47655 * 240.00062 * 2 1 3 33 33 H 1.09002 * 109.47358 * 119.99734 * 2 1 3 34 34 H 0.97002 * 119.99779 * 124.82562 * 4 3 2 35 35 H 0.97006 * 119.99745 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.49765 * 58.67923 * 13 3 2 37 37 H 1.08995 * 109.52971 * 298.59356 * 13 3 2 38 38 H 1.09007 * 109.58992 * 294.84934 * 14 13 3 39 39 H 1.09003 * 109.70458 * 174.49152 * 14 13 3 40 40 H 1.08002 * 120.41760 * 359.97438 * 20 19 18 41 41 H 1.08008 * 120.78307 * 180.22022 * 21 20 19 42 42 H 1.08001 * 120.42565 * 179.70963 * 22 21 20 43 43 H 1.08001 * 119.61747 * 179.97438 * 23 22 21 44 44 H 1.08999 * 117.50334 * 0.02562 * 25 18 16 45 45 H 1.09009 * 117.49820 * 145.02496 * 25 18 16 46 46 H 1.08998 * 117.50166 * 214.98277 * 26 18 16 47 47 H 1.09000 * 117.49823 * 359.97438 * 26 18 16 48 48 H 1.09001 * 109.58740 * 173.14473 * 27 15 14 49 49 H 1.09009 * 109.58645 * 293.56372 * 27 15 14 50 50 H 1.09000 * 109.56617 * 185.55551 * 28 27 15 51 51 H 1.08993 * 109.39036 * 65.50977 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5414 2.1365 -1.1900 5 6 1.7781 1.6174 -2.4348 6 1 2.2613 0.6570 -2.5364 7 6 1.3969 2.3258 -3.5661 8 7 0.8075 3.4961 -3.4422 9 14 1.7205 1.6180 -5.2643 10 1 2.3896 0.2990 -5.1316 11 1 0.4324 1.4489 -5.9838 12 1 2.5960 2.5433 -6.0276 13 6 3.5703 1.4423 -0.0137 14 6 4.0769 2.8876 -0.0483 15 7 3.4837 3.6237 1.0764 16 6 4.2645 4.2951 1.9458 17 8 5.4718 4.2082 1.8688 18 6 3.6374 5.1491 3.0175 19 6 2.6927 6.2165 2.5283 20 6 3.0484 6.9999 1.4464 21 6 2.1699 7.9754 1.0012 22 6 0.9658 8.1345 1.6703 23 6 0.6810 7.3172 2.7475 24 7 1.5388 6.3958 3.1406 25 6 4.4826 5.4659 4.2529 26 6 3.3159 4.4804 4.3556 27 6 2.0236 3.6087 1.2389 28 6 1.5396 2.1599 1.2559 29 1 -0.3633 -1.0240 0.0860 30 1 -0.3634 0.5865 0.8438 31 1 -0.3633 0.4375 -0.9298 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.0435 2.9637 -1.0960 35 1 0.5415 3.9912 -4.2329 36 1 3.9261 0.9109 -0.8964 37 1 3.9427 0.9477 0.8833 38 1 3.7821 3.3558 -0.9876 39 1 5.1632 2.8985 0.0402 40 1 3.9971 6.8513 0.9521 41 1 2.4195 8.6000 0.1561 42 1 0.2595 8.8877 1.3537 43 1 -0.2545 7.4350 3.2742 44 1 5.4923 5.0571 4.2904 45 1 4.3550 6.4463 4.7121 46 1 2.4213 4.8126 4.8822 47 1 3.5575 3.4227 4.4605 48 1 1.7553 4.0931 2.1777 49 1 1.5579 4.1369 0.4068 50 1 0.4500 2.1393 1.2768 51 1 1.9300 1.6583 2.1412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484811921.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:11 Heat of formation + Delta-G solvation = 44.160207 kcal Electronic energy + Delta-G solvation = -32116.586367 eV Core-core repulsion = 28210.110568 eV Total energy + Delta-G solvation = -3906.475798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.94902 -39.61415 -38.25872 -36.32676 -34.75019 -32.58886 -32.43872 -31.21561 -30.73900 -30.05759 -29.07885 -25.83367 -24.46643 -23.79296 -23.61368 -22.80123 -22.56534 -22.23063 -20.78470 -19.20056 -18.14005 -17.41799 -17.04755 -16.32801 -16.21806 -15.80744 -15.34582 -14.99576 -14.61592 -14.40817 -14.09490 -13.96210 -13.83770 -13.75677 -13.57124 -13.22172 -13.10342 -12.73380 -12.65144 -12.34800 -11.95750 -11.89435 -11.61480 -11.56151 -11.23527 -11.15263 -10.91195 -10.83545 -10.72534 -10.70043 -10.57208 -10.28700 -10.21906 -9.99361 -9.88544 -9.69745 -9.57171 -9.48877 -9.35592 -8.90493 -8.88690 -8.17129 -6.94088 -5.78160 -3.05707 1.02035 1.24054 2.67736 3.22839 3.41070 3.48020 3.49339 3.53998 3.95727 4.07196 4.49201 4.57257 4.61378 4.81286 4.86530 4.97100 5.06458 5.20100 5.23904 5.32736 5.35406 5.43531 5.56998 5.59545 5.61729 5.65710 5.71144 5.77252 5.81901 5.88044 5.99292 6.02100 6.06695 6.08260 6.10915 6.16450 6.17350 6.22585 6.33971 6.42598 6.54545 6.62251 6.62654 6.68620 6.83350 6.89055 6.95340 7.11916 7.14946 7.72972 7.77168 7.89962 8.40558 8.41591 9.52400 10.09149 10.44975 11.44358 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011256 B = 0.004135 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.880683 B = 6770.491320 C = 7581.570872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.202 3.798 4 N -0.712 5.712 5 C -0.226 4.226 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.899 3.101 10 H -0.281 1.281 11 H -0.294 1.294 12 H -0.294 1.294 13 C -0.134 4.134 14 C 0.120 3.880 15 N -0.588 5.588 16 C 0.553 3.447 17 O -0.548 6.548 18 C -0.119 4.119 19 C 0.172 3.828 20 C -0.154 4.154 21 C -0.066 4.066 22 C -0.174 4.174 23 C 0.102 3.898 24 N -0.479 5.479 25 C -0.132 4.132 26 C -0.136 4.136 27 C 0.110 3.890 28 C -0.130 4.130 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.382 0.618 35 H 0.252 0.748 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.157 0.843 44 H 0.110 0.890 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.099 0.901 48 H 0.083 0.917 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.797 5.946 15.114 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.111 3.889 4 N -0.354 5.354 5 C -0.358 4.358 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.581 5.581 9 Si 0.731 3.269 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.221 1.221 13 C -0.175 4.175 14 C -0.001 4.001 15 N -0.318 5.318 16 C 0.339 3.661 17 O -0.426 6.426 18 C -0.123 4.123 19 C 0.035 3.965 20 C -0.174 4.174 21 C -0.092 4.092 22 C -0.194 4.194 23 C -0.055 4.055 24 N -0.188 5.188 25 C -0.169 4.169 26 C -0.173 4.173 27 C -0.013 4.013 28 C -0.168 4.168 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.217 0.783 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.174 0.826 44 H 0.128 0.872 45 H 0.118 0.882 46 H 0.135 0.865 47 H 0.118 0.882 48 H 0.101 0.899 49 H 0.090 0.910 50 H 0.096 0.904 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.261 5.277 15.593 16.510 hybrid contribution 0.007 0.487 -2.060 2.117 sum 1.268 5.765 13.534 14.765 Atomic orbital electron populations 1.21664 0.96158 0.99309 1.02594 1.21853 0.96253 0.97912 1.00122 1.19546 0.90958 0.91331 0.87090 1.42449 1.65073 1.27711 1.00155 1.19151 1.32075 1.01238 0.83288 0.91187 1.24668 1.01920 0.96728 0.97433 1.69663 1.46550 1.13836 1.28068 0.86238 0.77293 0.78039 0.85361 1.20663 1.22123 1.22084 1.22318 0.98746 0.95507 1.00885 1.21616 0.97643 0.92279 0.88554 1.47990 1.07270 1.49262 1.27322 1.19137 0.86297 0.79514 0.81140 1.90660 1.14028 1.65163 1.72761 1.19957 1.02352 0.99446 0.90518 1.19733 0.91078 0.93545 0.92171 1.21870 1.01274 0.96523 0.97701 1.21582 0.93186 0.96277 0.98172 1.22137 0.98033 1.01559 0.97663 1.22681 0.97873 0.90675 0.94284 1.67305 1.02359 1.18857 1.30274 1.23041 0.97013 1.01030 0.95858 1.23046 1.00526 0.98641 0.95088 1.21702 0.79402 0.97901 1.02260 1.22056 1.01283 0.95042 0.98458 0.94822 0.93835 0.90978 0.91983 0.94092 0.78295 0.93766 0.90762 0.93498 0.89550 0.90563 0.85082 0.84666 0.84748 0.82617 0.87195 0.88163 0.86547 0.88225 0.89920 0.90955 0.90418 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.47 37.16 0.35 -2.02 16 2 C -0.12 -2.12 4.73 -26.73 -0.13 -2.24 16 3 C 0.20 3.67 0.44 -131.77 -0.06 3.62 16 4 N -0.71 -15.79 3.49 -47.19 -0.16 -15.95 16 5 C -0.23 -5.69 8.63 -15.06 -0.13 -5.82 16 6 H 0.07 1.76 6.70 -52.49 -0.35 1.41 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 8 N -0.93 -26.60 13.06 55.49 0.72 -25.88 16 9 Si 0.90 21.72 29.55 -169.99 -5.02 16.70 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 C -0.13 -2.40 4.78 -26.61 -0.13 -2.53 16 14 C 0.12 2.24 6.19 -3.71 -0.02 2.22 16 15 N -0.59 -10.00 2.98 -173.03 -0.52 -10.51 16 16 C 0.55 9.29 6.40 -10.99 -0.07 9.22 16 17 O -0.55 -10.64 15.90 5.55 0.09 -10.55 16 18 C -0.12 -1.64 1.24 -156.81 -0.19 -1.83 16 19 C 0.17 2.35 4.38 -82.59 -0.36 1.98 16 20 C -0.15 -2.09 9.39 -39.44 -0.37 -2.46 16 21 C -0.07 -0.77 10.17 -39.28 -0.40 -1.17 16 22 C -0.17 -1.80 10.11 -39.44 -0.40 -2.20 16 23 C 0.10 1.10 11.18 -17.55 -0.20 0.91 16 24 N -0.48 -6.11 8.95 -9.47 -0.08 -6.19 16 25 C -0.13 -1.54 9.75 -26.69 -0.26 -1.80 16 26 C -0.14 -1.56 9.43 -26.69 -0.25 -1.82 16 27 C 0.11 1.79 5.38 -3.94 -0.02 1.77 16 28 C -0.13 -2.07 4.66 -26.83 -0.13 -2.19 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.68 6.17 -51.93 -0.32 0.36 16 31 H 0.07 1.44 7.64 -51.93 -0.40 1.05 16 32 H 0.06 1.17 6.96 -51.93 -0.36 0.81 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.38 9.26 6.34 -40.82 -0.26 9.00 16 35 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.07 1.41 7.71 -51.93 -0.40 1.01 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.85 7.74 -51.92 -0.40 1.45 16 39 H 0.08 1.43 7.00 -51.93 -0.36 1.06 16 40 H 0.13 1.86 7.80 -52.49 -0.41 1.45 16 41 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 42 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 44 H 0.11 1.32 7.84 -51.93 -0.41 0.92 16 45 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 46 H 0.12 1.26 7.58 -51.93 -0.39 0.87 16 47 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 48 H 0.08 1.24 4.94 -51.93 -0.26 0.99 16 49 H 0.07 1.36 6.85 -51.92 -0.36 1.00 16 50 H 0.08 1.22 6.27 -51.93 -0.33 0.90 16 51 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -29.52 395.96 -9.81 -39.33 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -7.94 Total: 13.88 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -2.86 Total: -6.79 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.04 Total: -58.54 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.52 -9.81 -39.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484811921.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.492 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds