Wall clock time and date at job start Wed Apr 1 2020 03:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.20240 * 2 1 4 4 C 1.52765 * 109.19878 * 240.66058 * 2 1 3 5 5 C 1.53786 * 111.18623 * 187.10735 * 4 2 1 6 6 N 1.45248 * 107.39758 * 56.38482 * 5 4 2 7 7 C 1.46416 * 118.94475 * 178.77065 * 6 5 4 8 8 H 1.09006 * 110.49826 * 36.26509 * 7 6 5 9 9 C 1.50706 * 110.49967 * 273.72836 * 7 6 5 10 10 C 1.38287 * 119.92520 * 123.67837 * 9 7 6 11 11 C 1.38104 * 120.07402 * 179.97438 * 10 9 7 12 12 C 1.38909 * 119.92339 * 0.02562 * 11 10 9 13 13 N 1.39678 * 120.07340 * 179.97438 * 12 11 10 14 14 C 1.46495 * 119.99851 * 0.02562 * 13 12 11 15 15 C 1.46501 * 119.99968 * 179.97438 * 13 12 11 16 16 C 1.50696 * 109.47281 * 270.00183 * 15 13 12 17 17 H 1.07995 * 120.00380 * 0.02562 * 16 15 13 18 18 C 1.37885 * 119.99790 * 180.02562 * 16 15 13 19 19 N 1.31510 * 119.99911 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99793 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47146 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.46862 * 119.99941 * 20 18 16 23 23 H 1.48502 * 109.47018 * 239.99969 * 20 18 16 24 24 C 1.38911 * 119.85374 * 0.25153 * 12 11 10 25 25 C 1.38107 * 119.92355 * 359.49445 * 24 12 11 26 26 N 1.48078 * 104.25068 * 155.00001 * 7 6 5 27 27 C 1.36455 * 109.01670 * 339.73728 * 26 7 6 28 28 O 1.21280 * 126.60737 * 175.33882 * 27 26 7 29 29 C 1.49081 * 108.70997 * 293.68541 * 6 5 4 30 30 H 1.08996 * 110.03290 * 313.28196 * 29 6 5 31 31 C 1.52087 * 106.69686 * 72.57393 * 29 6 5 32 32 H 1.08999 * 109.47274 * 179.34557 * 1 2 3 33 33 H 1.09010 * 109.46673 * 299.33979 * 1 2 3 34 34 H 1.08993 * 109.47768 * 59.33684 * 1 2 3 35 35 H 1.08995 * 109.13806 * 66.66320 * 4 2 1 36 36 H 1.08998 * 109.09168 * 307.51124 * 4 2 1 37 37 H 1.09011 * 109.87461 * 296.91679 * 5 4 2 38 38 H 1.08999 * 109.93574 * 175.89597 * 5 4 2 39 39 H 1.07999 * 119.96191 * 359.96695 * 10 9 7 40 40 H 1.07995 * 120.03781 * 180.02562 * 11 10 9 41 41 H 1.09004 * 109.47128 * 269.99500 * 14 13 12 42 42 H 1.09002 * 109.47638 * 29.99521 * 14 13 12 43 43 H 1.09002 * 109.47712 * 149.99949 * 14 13 12 44 44 H 1.08998 * 109.46955 * 30.00521 * 15 13 12 45 45 H 1.09000 * 109.46857 * 150.00058 * 15 13 12 46 46 H 0.97003 * 119.99717 * 179.97438 * 19 18 16 47 47 H 1.08001 * 120.03844 * 179.71901 * 24 12 11 48 48 H 1.07997 * 119.96360 * 180.24736 * 25 24 12 49 49 H 0.97007 * 125.43286 * 159.65001 * 26 7 6 50 50 H 1.08996 * 110.01400 * 175.93666 * 31 29 6 51 51 H 1.08993 * 110.01780 * 54.50066 * 31 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8885 1.0293 0.0000 4 6 2.0323 -0.7069 -1.2576 5 6 3.5588 -0.8895 -1.2204 6 7 3.8797 -1.6170 -0.0049 7 6 5.2775 -1.9540 0.2712 8 1 5.9366 -1.1528 -0.0633 9 6 5.6486 -3.2537 -0.3954 10 6 6.7163 -3.2986 -1.2731 11 6 7.0594 -4.4880 -1.8853 12 6 6.3303 -5.6400 -1.6189 13 7 6.6743 -6.8445 -2.2367 14 6 7.8053 -6.8941 -3.1664 15 6 5.9046 -8.0586 -1.9542 16 6 6.5149 -8.7782 -0.7792 17 1 7.3885 -8.3717 -0.2913 18 6 5.9580 -9.9557 -0.3269 19 7 4.8946 -10.4510 -0.9212 20 14 6.7141 -10.8474 1.1301 21 1 7.8950 -10.0892 1.6159 22 1 5.7111 -10.9541 2.2199 23 1 7.1377 -12.2080 0.7122 24 6 5.2549 -5.5901 -0.7411 25 6 4.9204 -4.3985 -0.1283 26 7 5.3351 -2.0920 1.7444 27 6 4.2697 -1.4402 2.2940 28 8 3.9631 -1.4164 3.4672 29 6 3.5527 -0.7566 1.1679 30 1 3.9452 0.2486 1.0145 31 6 2.0357 -0.7128 1.2682 32 1 -0.3634 -1.0276 -0.0117 33 1 -0.3633 0.5036 0.8960 34 1 -0.3634 0.5240 -0.8839 35 1 1.7646 -0.1138 -2.1320 36 1 1.5572 -1.6852 -1.3306 37 1 4.0484 0.0845 -1.2093 38 1 3.8864 -1.4587 -2.0903 39 1 7.2823 -2.4024 -1.4802 40 1 7.8935 -4.5225 -2.5704 41 1 7.4541 -6.6866 -4.1773 42 1 8.5454 -6.1473 -2.8785 43 1 8.2581 -7.8851 -3.1355 44 1 4.8745 -7.7896 -1.7204 45 1 5.9206 -8.7104 -2.8277 46 1 4.5030 -11.2796 -0.6033 47 1 4.6832 -6.4830 -0.5353 48 1 4.0869 -4.3599 0.5573 49 1 6.0196 -2.5701 2.2382 50 1 1.7365 -0.1537 2.1547 51 1 1.6353 -1.7255 1.3118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249488283.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:29 Heat of formation + Delta-G solvation = 15.613724 kcal Electronic energy + Delta-G solvation = -30434.430222 eV Core-core repulsion = 26526.716555 eV Total energy + Delta-G solvation = -3907.713667 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.28574 -38.96493 -37.97559 -36.64327 -35.26636 -32.85652 -32.74700 -31.22010 -30.55735 -29.92374 -27.97905 -27.79123 -25.76931 -24.47125 -23.84537 -22.71352 -22.08908 -21.32858 -20.32588 -20.05971 -19.67401 -17.39750 -16.67783 -16.54866 -16.32865 -15.85165 -15.37670 -15.17568 -14.90206 -14.59178 -14.40295 -14.14948 -14.01489 -13.80422 -13.59164 -13.51873 -13.20546 -13.03330 -12.97587 -12.67806 -12.20012 -12.07821 -11.95161 -11.90427 -11.61556 -11.48239 -11.35422 -11.30612 -11.03700 -10.94150 -10.84926 -10.74591 -10.47045 -10.31336 -9.97552 -9.88300 -9.80623 -9.47764 -8.95362 -8.61075 -8.54688 -8.36386 -6.57773 -6.07923 -4.21759 1.97408 2.04617 2.44472 3.13766 3.23341 3.31915 3.36066 3.65427 4.05723 4.10889 4.37325 4.38478 4.52627 4.57186 4.70792 4.90862 4.92777 4.98464 5.09234 5.12837 5.17895 5.27902 5.34132 5.42673 5.46443 5.48159 5.55977 5.66636 5.73406 5.75523 5.86442 5.94614 5.95723 6.00158 6.00558 6.14473 6.20804 6.25879 6.29437 6.35121 6.54582 6.62807 6.80659 6.82225 6.91685 7.00655 7.15064 7.21176 7.31124 7.48933 7.76656 8.09638 8.16810 8.17891 8.38623 8.86959 9.45457 10.91612 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012537 B = 0.002770 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.841824 B =10104.552002 C =10594.632931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.065 0.935 4 C -0.110 4.110 5 C 0.066 3.934 6 N -0.515 5.515 7 C 0.358 3.642 8 H 0.058 0.942 9 C -0.192 4.192 10 C -0.056 4.056 11 C -0.226 4.226 12 C 0.252 3.748 13 N -0.612 5.612 14 C 0.097 3.903 15 C 0.248 3.752 16 C -0.532 4.532 17 H 0.060 0.940 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.283 1.283 24 C -0.193 4.193 25 C -0.025 4.025 26 N -0.731 5.731 27 C 0.535 3.465 28 O -0.521 6.521 29 C 0.022 3.978 30 H 0.083 0.917 31 C -0.087 4.087 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.037 0.963 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.037 0.963 45 H 0.031 0.969 46 H 0.264 0.736 47 H 0.132 0.868 48 H 0.114 0.886 49 H 0.417 0.583 50 H 0.074 0.926 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.470 21.860 -3.013 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.084 0.916 4 C -0.148 4.148 5 C -0.062 4.062 6 N -0.242 5.242 7 C 0.166 3.834 8 H 0.076 0.924 9 C -0.196 4.196 10 C -0.076 4.076 11 C -0.249 4.249 12 C 0.143 3.857 13 N -0.316 5.316 14 C -0.047 4.047 15 C 0.128 3.872 16 C -0.571 4.571 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.209 1.209 24 C -0.216 4.216 25 C -0.045 4.045 26 N -0.389 5.389 27 C 0.321 3.679 28 O -0.395 6.395 29 C -0.089 4.089 30 H 0.101 0.899 31 C -0.125 4.125 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.074 0.926 47 H 0.150 0.850 48 H 0.132 0.868 49 H 0.258 0.742 50 H 0.093 0.907 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.059 21.065 -2.631 21.448 hybrid contribution 1.342 -0.269 0.847 1.609 sum -1.718 20.796 -1.784 20.943 Atomic orbital electron populations 1.21812 0.94768 1.02218 1.01557 1.21260 0.96061 0.99069 0.94589 0.91606 1.21682 0.94190 1.01719 0.97196 1.21973 0.96504 0.95798 0.91960 1.63921 1.18427 1.39470 1.02391 1.20454 0.88561 0.95189 0.79237 0.92426 1.19041 1.01296 0.93852 1.05435 1.20467 0.95263 0.96650 0.95181 1.20489 1.04073 0.92331 1.07989 1.18018 0.91842 0.85893 0.89926 1.47185 1.32245 1.07565 1.44655 1.21501 0.89112 1.02225 0.91892 1.19323 0.91465 0.80076 0.96338 1.21585 1.13666 1.07041 1.14838 0.92220 1.24961 0.94890 0.97100 0.97072 1.69935 1.21304 1.21017 1.40984 0.86472 0.79352 0.79436 0.82409 1.19730 1.20774 1.20925 1.20924 1.00082 0.99032 1.01559 1.20537 0.96730 0.90994 0.96202 1.47331 1.28109 1.55907 1.07592 1.20570 0.80731 0.78176 0.88452 1.90744 1.68924 1.62443 1.17431 1.22554 0.98636 0.96349 0.91350 0.89948 1.21433 0.91086 1.02408 0.97618 0.92296 0.92648 0.92729 0.91314 0.90597 0.94487 0.89394 0.87397 0.86715 0.94462 0.92617 0.91339 0.94513 0.95116 0.92638 0.84980 0.86827 0.74199 0.90733 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.15 37.16 0.34 -0.69 16 2 C -0.09 -0.70 2.75 -90.21 -0.25 -0.95 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.11 -0.87 5.32 -26.44 -0.14 -1.01 16 5 C 0.07 0.58 6.01 -4.31 -0.03 0.55 16 6 N -0.51 -5.61 4.37 -224.80 -0.98 -6.59 16 7 C 0.36 4.13 3.32 -127.14 -0.42 3.70 16 8 H 0.06 0.58 7.91 -51.93 -0.41 0.17 16 9 C -0.19 -2.67 5.30 -104.58 -0.55 -3.23 16 10 C -0.06 -0.76 9.67 -39.61 -0.38 -1.14 16 11 C -0.23 -3.57 9.21 -39.38 -0.36 -3.94 16 12 C 0.25 4.80 6.55 -83.79 -0.55 4.25 16 13 N -0.61 -12.55 2.99 -181.00 -0.54 -13.09 16 14 C 0.10 1.61 10.19 59.84 0.61 2.22 16 15 C 0.25 6.05 4.92 -5.20 -0.03 6.03 16 16 C -0.53 -14.28 9.39 -34.44 -0.32 -14.60 16 17 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 20 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.19 -3.76 9.21 -39.38 -0.36 -4.12 16 25 C -0.02 -0.41 9.39 -39.61 -0.37 -0.78 16 26 N -0.73 -9.00 6.04 -56.79 -0.34 -9.35 16 27 C 0.54 7.27 8.30 -10.57 -0.09 7.18 16 28 O -0.52 -8.85 17.98 5.56 0.10 -8.75 16 29 C 0.02 0.24 2.43 -68.46 -0.17 0.07 16 30 H 0.08 0.76 7.81 -51.93 -0.41 0.36 16 31 C -0.09 -0.85 5.11 -26.66 -0.14 -0.99 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 37 H 0.04 0.28 7.88 -51.92 -0.41 -0.13 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.11 1.17 7.97 -52.49 -0.42 0.75 16 40 H 0.11 1.63 6.14 -52.49 -0.32 1.31 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.81 6.20 -51.93 -0.32 0.49 16 43 H 0.07 1.17 8.07 -51.93 -0.42 0.76 16 44 H 0.04 0.95 6.18 -51.93 -0.32 0.63 16 45 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 46 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.13 2.90 6.14 -52.49 -0.32 2.57 16 48 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 49 H 0.42 4.93 8.96 -40.82 -0.37 4.57 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 404.12 15.07 6.09 6.09 Total: -1.00 -30.02 404.12 -11.60 -41.62 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -8.33 Total: 4.36 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -3.31 Total: -5.84 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -1.13 Total: -53.65 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.10 Total: -8.75 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.02 -11.60 -41.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249488283.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.231 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds