Wall clock time and date at job start Wed Apr 1 2020 03:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.20240 * 2 1 4 4 C 1.52765 * 109.19878 * 240.66058 * 2 1 3 5 5 C 1.53786 * 111.18623 * 187.10735 * 4 2 1 6 6 N 1.45248 * 107.39758 * 56.38482 * 5 4 2 7 7 C 1.46416 * 118.94475 * 178.77065 * 6 5 4 8 8 H 1.09006 * 110.49826 * 36.26509 * 7 6 5 9 9 C 1.50706 * 110.49967 * 273.72836 * 7 6 5 10 10 C 1.38287 * 119.92520 * 123.67837 * 9 7 6 11 11 C 1.38104 * 120.07402 * 179.97438 * 10 9 7 12 12 C 1.38909 * 119.92339 * 0.02562 * 11 10 9 13 13 N 1.39678 * 120.07340 * 179.97438 * 12 11 10 14 14 C 1.46495 * 119.99851 * 0.02562 * 13 12 11 15 15 C 1.46501 * 119.99968 * 179.97438 * 13 12 11 16 16 C 1.50696 * 109.47281 * 270.00183 * 15 13 12 17 17 H 1.07995 * 120.00380 * 0.02562 * 16 15 13 18 18 C 1.37885 * 119.99790 * 180.02562 * 16 15 13 19 19 N 1.31510 * 119.99911 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99793 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47146 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.46862 * 119.99941 * 20 18 16 23 23 H 1.48502 * 109.47018 * 239.99969 * 20 18 16 24 24 C 1.38911 * 119.85374 * 0.25153 * 12 11 10 25 25 C 1.38107 * 119.92355 * 359.49445 * 24 12 11 26 26 N 1.48078 * 104.25068 * 155.00001 * 7 6 5 27 27 C 1.36455 * 109.01670 * 339.73728 * 26 7 6 28 28 O 1.21280 * 126.60737 * 175.33882 * 27 26 7 29 29 C 1.49081 * 108.70997 * 293.68541 * 6 5 4 30 30 H 1.08996 * 110.03290 * 313.28196 * 29 6 5 31 31 C 1.52087 * 106.69686 * 72.57393 * 29 6 5 32 32 H 1.08999 * 109.47274 * 179.34557 * 1 2 3 33 33 H 1.09010 * 109.46673 * 299.33979 * 1 2 3 34 34 H 1.08993 * 109.47768 * 59.33684 * 1 2 3 35 35 H 1.08995 * 109.13806 * 66.66320 * 4 2 1 36 36 H 1.08998 * 109.09168 * 307.51124 * 4 2 1 37 37 H 1.09011 * 109.87461 * 296.91679 * 5 4 2 38 38 H 1.08999 * 109.93574 * 175.89597 * 5 4 2 39 39 H 1.07999 * 119.96191 * 359.96695 * 10 9 7 40 40 H 1.07995 * 120.03781 * 180.02562 * 11 10 9 41 41 H 1.09004 * 109.47128 * 269.99500 * 14 13 12 42 42 H 1.09002 * 109.47638 * 29.99521 * 14 13 12 43 43 H 1.09002 * 109.47712 * 149.99949 * 14 13 12 44 44 H 1.08998 * 109.46955 * 30.00521 * 15 13 12 45 45 H 1.09000 * 109.46857 * 150.00058 * 15 13 12 46 46 H 0.97003 * 119.99717 * 179.97438 * 19 18 16 47 47 H 1.08001 * 120.03844 * 179.71901 * 24 12 11 48 48 H 1.07997 * 119.96360 * 180.24736 * 25 24 12 49 49 H 0.97007 * 125.43286 * 159.65001 * 26 7 6 50 50 H 1.08996 * 110.01400 * 175.93666 * 31 29 6 51 51 H 1.08993 * 110.01780 * 54.50066 * 31 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8885 1.0293 0.0000 4 6 2.0323 -0.7069 -1.2576 5 6 3.5588 -0.8895 -1.2204 6 7 3.8797 -1.6170 -0.0049 7 6 5.2775 -1.9540 0.2712 8 1 5.9366 -1.1528 -0.0633 9 6 5.6486 -3.2537 -0.3954 10 6 6.7163 -3.2986 -1.2731 11 6 7.0594 -4.4880 -1.8853 12 6 6.3303 -5.6400 -1.6189 13 7 6.6743 -6.8445 -2.2367 14 6 7.8053 -6.8941 -3.1664 15 6 5.9046 -8.0586 -1.9542 16 6 6.5149 -8.7782 -0.7792 17 1 7.3885 -8.3717 -0.2913 18 6 5.9580 -9.9557 -0.3269 19 7 4.8946 -10.4510 -0.9212 20 14 6.7141 -10.8474 1.1301 21 1 7.8950 -10.0892 1.6159 22 1 5.7111 -10.9541 2.2199 23 1 7.1377 -12.2080 0.7122 24 6 5.2549 -5.5901 -0.7411 25 6 4.9204 -4.3985 -0.1283 26 7 5.3351 -2.0920 1.7444 27 6 4.2697 -1.4402 2.2940 28 8 3.9631 -1.4164 3.4672 29 6 3.5527 -0.7566 1.1679 30 1 3.9452 0.2486 1.0145 31 6 2.0357 -0.7128 1.2682 32 1 -0.3634 -1.0276 -0.0117 33 1 -0.3633 0.5036 0.8960 34 1 -0.3634 0.5240 -0.8839 35 1 1.7646 -0.1138 -2.1320 36 1 1.5572 -1.6852 -1.3306 37 1 4.0484 0.0845 -1.2093 38 1 3.8864 -1.4587 -2.0903 39 1 7.2823 -2.4024 -1.4802 40 1 7.8935 -4.5225 -2.5704 41 1 7.4541 -6.6866 -4.1773 42 1 8.5454 -6.1473 -2.8785 43 1 8.2581 -7.8851 -3.1355 44 1 4.8745 -7.7896 -1.7204 45 1 5.9206 -8.7104 -2.8277 46 1 4.5030 -11.2796 -0.6033 47 1 4.6832 -6.4830 -0.5353 48 1 4.0869 -4.3599 0.5573 49 1 6.0196 -2.5701 2.2382 50 1 1.7365 -0.1537 2.1547 51 1 1.6353 -1.7255 1.3118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249488283.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:28 Heat of formation + Delta-G solvation = -2.994380 kcal Electronic energy + Delta-G solvation = -30435.237130 eV Core-core repulsion = 26526.716555 eV Total energy + Delta-G solvation = -3908.520574 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.21654 -40.30200 -38.94770 -37.77579 -36.55034 -34.75350 -33.66719 -32.14004 -31.90528 -31.08731 -29.63305 -28.73468 -27.05214 -25.80979 -24.84321 -23.99018 -23.26995 -22.51127 -21.27646 -20.98332 -20.76915 -18.66293 -18.51164 -17.93800 -17.39583 -16.84139 -16.65176 -16.35167 -16.02843 -15.96064 -15.39125 -15.35369 -15.29091 -14.88378 -14.69830 -14.55433 -14.32122 -14.17614 -14.02116 -13.85877 -13.81413 -13.27167 -13.18093 -13.03263 -12.73488 -12.69984 -12.59619 -12.57057 -12.49659 -12.26286 -12.16590 -11.80042 -11.75634 -11.53851 -11.45363 -11.16436 -10.84760 -10.66947 -10.55496 -10.38420 -9.67507 -9.43387 -8.39399 -7.85398 -6.39514 0.70874 0.72570 1.33626 1.35999 1.39478 1.47350 2.20312 2.32019 2.61225 2.73137 3.04264 3.10460 3.38557 3.64149 3.89155 3.90358 3.96125 4.03981 4.18724 4.25190 4.28836 4.34799 4.43452 4.48356 4.60711 4.66980 4.71809 4.73031 4.79854 4.84474 4.86549 4.90314 5.00439 5.04200 5.06904 5.08799 5.17674 5.22463 5.30989 5.32015 5.35412 5.45174 5.56501 5.58176 5.60250 5.68320 5.75674 5.85795 5.90601 6.04874 6.16324 6.24773 6.47478 6.80755 6.91657 7.14168 7.32400 8.81047 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012537 B = 0.002770 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.841824 B =10104.552002 C =10594.632931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 H 0.085 0.915 4 C -0.108 4.108 5 C 0.065 3.935 6 N -0.533 5.533 7 C 0.361 3.639 8 H 0.095 0.905 9 C -0.174 4.174 10 C -0.041 4.041 11 C -0.217 4.217 12 C 0.224 3.776 13 N -0.630 5.630 14 C 0.096 3.904 15 C 0.266 3.734 16 C -0.540 4.540 17 H 0.050 0.950 18 C 0.012 3.988 19 N -0.926 5.926 20 Si 0.960 3.040 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.273 1.273 24 C -0.223 4.223 25 C -0.027 4.027 26 N -0.730 5.730 27 C 0.527 3.473 28 O -0.564 6.564 29 C 0.031 3.969 30 H 0.110 0.890 31 C -0.087 4.087 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.156 0.844 40 H 0.139 0.861 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.055 0.945 44 H 0.009 0.991 45 H 0.010 0.990 46 H 0.267 0.733 47 H 0.088 0.912 48 H 0.102 0.898 49 H 0.418 0.582 50 H 0.074 0.926 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.704 25.454 -3.799 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 H 0.103 0.897 4 C -0.146 4.146 5 C -0.062 4.062 6 N -0.260 5.260 7 C 0.169 3.831 8 H 0.112 0.888 9 C -0.178 4.178 10 C -0.060 4.060 11 C -0.240 4.240 12 C 0.119 3.881 13 N -0.336 5.336 14 C -0.046 4.046 15 C 0.144 3.856 16 C -0.578 4.578 17 H 0.068 0.932 18 C -0.187 4.187 19 N -0.566 5.566 20 Si 0.785 3.215 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.198 1.198 24 C -0.246 4.246 25 C -0.047 4.047 26 N -0.387 5.387 27 C 0.314 3.686 28 O -0.442 6.442 29 C -0.080 4.080 30 H 0.128 0.872 31 C -0.126 4.126 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.174 0.826 40 H 0.157 0.843 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.027 0.973 45 H 0.028 0.972 46 H 0.076 0.924 47 H 0.107 0.893 48 H 0.120 0.880 49 H 0.258 0.742 50 H 0.092 0.908 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.276 24.695 -3.449 24.967 hybrid contribution 0.743 -1.282 1.099 1.845 sum -0.533 23.413 -2.350 23.537 Atomic orbital electron populations 1.21803 0.94476 1.01648 1.02356 1.21224 0.96283 0.99580 0.93126 0.89657 1.21678 0.93762 1.01001 0.98120 1.22077 0.96961 0.96678 0.90520 1.63872 1.18066 1.40717 1.03390 1.20570 0.89796 0.94543 0.78240 0.88826 1.19320 1.00218 0.93868 1.04425 1.20921 0.94475 0.97415 0.93222 1.20790 1.03799 0.91533 1.07857 1.18268 0.92670 0.86561 0.90651 1.47019 1.33381 1.06800 1.46446 1.21640 0.88469 1.02436 0.92074 1.18768 0.90725 0.81483 0.94601 1.21797 1.13231 1.07334 1.15483 0.93210 1.25771 0.95304 0.97970 0.99659 1.70038 1.22517 1.21545 1.42491 0.85481 0.78476 0.78489 0.79089 1.19393 1.20591 1.19837 1.20725 1.01258 0.98686 1.03963 1.20459 0.97003 0.91271 0.95964 1.47410 1.27745 1.55353 1.08157 1.21110 0.80885 0.78064 0.88529 1.90716 1.69970 1.64072 1.19392 1.22546 0.98690 0.97040 0.89723 0.87249 1.21431 0.90787 1.01343 0.99012 0.93616 0.92353 0.91409 0.89204 0.92775 0.91840 0.89757 0.82642 0.84337 0.92701 0.89922 0.92645 0.97290 0.97184 0.92415 0.89339 0.87951 0.74201 0.90784 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.15 71.98 0.66 -1.15 16 2 C -0.08 -1.08 2.75 -10.53 -0.03 -1.11 16 3 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.11 -1.43 5.32 30.78 0.16 -1.27 16 5 C 0.07 0.90 6.01 86.88 0.52 1.43 16 6 N -0.53 -10.25 4.37 -865.12 -3.78 -14.04 16 7 C 0.36 7.08 3.32 128.25 0.43 7.51 16 8 H 0.09 1.29 7.91 -2.38 -0.02 1.27 16 9 C -0.17 -4.42 5.30 -19.84 -0.11 -4.53 16 10 C -0.04 -0.94 9.67 22.25 0.22 -0.72 16 11 C -0.22 -6.25 9.21 22.40 0.21 -6.05 16 12 C 0.22 8.64 6.55 38.21 0.25 8.89 16 13 N -0.63 -26.57 2.99 -726.57 -2.17 -28.75 16 14 C 0.10 3.15 10.19 127.77 1.30 4.45 16 15 C 0.27 13.86 4.92 85.63 0.42 14.28 16 16 C -0.54 -30.27 9.39 25.60 0.24 -30.03 16 17 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 18 C 0.01 0.69 5.46 84.66 0.46 1.15 16 19 N -0.93 -54.71 13.29 21.45 0.28 -54.43 16 20 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C -0.22 -9.20 9.21 22.40 0.21 -8.99 16 25 C -0.03 -0.92 9.39 22.25 0.21 -0.71 16 26 N -0.73 -16.69 6.04 -451.02 -2.73 -19.41 16 27 C 0.53 13.80 8.30 87.17 0.72 14.53 16 28 O -0.56 -19.29 17.98 -3.03 -0.05 -19.34 16 29 C 0.03 0.58 2.43 43.22 0.11 0.69 16 30 H 0.11 1.54 7.81 -2.39 -0.02 1.52 16 31 C -0.09 -1.61 5.11 30.64 0.16 -1.46 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.05 0.96 8.12 -2.39 -0.02 0.94 16 37 H 0.06 0.59 7.88 -2.38 -0.02 0.57 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.16 2.22 7.97 -2.91 -0.02 2.20 16 40 H 0.14 3.33 6.14 -2.91 -0.02 3.31 16 41 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.08 2.20 6.20 -2.39 -0.01 2.19 16 43 H 0.05 1.92 8.07 -2.39 -0.02 1.90 16 44 H 0.01 0.52 6.18 -2.39 -0.01 0.50 16 45 H 0.01 0.56 8.07 -2.39 -0.02 0.54 16 46 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 47 H 0.09 4.34 6.14 -2.91 -0.02 4.33 16 48 H 0.10 3.61 8.06 -2.91 -0.02 3.59 16 49 H 0.42 9.34 8.96 -92.70 -0.83 8.51 16 50 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -70.16 404.12 -0.20 -70.36 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.10 Total: 22.16 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 6.13 Total: -3.10 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -8.40 Total: -116.62 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.05 Total: -19.34 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -70.16 -0.20 -70.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249488283.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.361 kcal (2) G-P(sol) polarization free energy of solvation -70.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds