Wall clock time and date at job start Wed Apr 1 2020 03:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.87904 * 2 1 4 4 C 1.54316 * 110.02571 * 121.12052 * 2 1 3 5 5 H 1.09001 * 110.70373 * 23.20676 * 4 2 1 6 6 C 1.50703 * 110.70310 * 260.14637 * 4 2 1 7 7 O 1.21273 * 120.00301 * 0.02562 * 6 4 2 8 8 N 1.34783 * 119.99617 * 180.02562 * 6 4 2 9 9 C 1.46962 * 120.59537 * 359.71892 * 8 6 4 10 10 C 1.53815 * 108.39638 * 124.75752 * 9 8 6 11 11 N 1.46965 * 108.57740 * 49.64222 * 10 9 8 12 12 C 1.36929 * 120.59571 * 124.62582 * 11 10 9 13 13 H 1.08011 * 120.00206 * 204.33702 * 12 11 10 14 14 C 1.38810 * 120.00242 * 24.32860 * 12 11 10 15 15 N 1.31620 * 120.00309 * 215.66940 * 14 12 11 16 16 Si 1.86794 * 119.99809 * 35.67330 * 14 12 11 17 17 H 1.48496 * 109.47554 * 95.60630 * 16 14 12 18 18 H 1.48504 * 109.47089 * 215.60850 * 16 14 12 19 19 H 1.48496 * 109.47180 * 335.60391 * 16 14 12 20 20 C 1.46974 * 118.80928 * 304.64273 * 11 10 9 21 21 C 1.46964 * 120.58882 * 180.02562 * 8 6 4 22 22 C 1.55435 * 103.04777 * 141.76725 * 4 2 1 23 23 C 1.54908 * 101.51572 * 324.36432 * 22 4 2 24 24 N 1.47443 * 109.88850 * 238.97248 * 2 1 3 25 25 C 1.39673 * 110.99780 * 3.68772 * 24 2 1 26 26 C 1.38912 * 120.07699 * 102.07656 * 25 24 2 27 27 C 1.38101 * 119.92553 * 179.76494 * 26 25 24 28 28 C 1.38283 * 120.07713 * 0.51115 * 27 26 25 29 29 C 1.38289 * 120.14740 * 359.74158 * 28 27 26 30 30 C 1.38108 * 120.07530 * 359.97438 * 29 28 27 31 31 H 1.09004 * 109.47184 * 187.40609 * 1 2 3 32 32 H 1.08997 * 109.47305 * 307.40126 * 1 2 3 33 33 H 1.08995 * 109.47220 * 67.40296 * 1 2 3 34 34 H 1.08994 * 109.61209 * 244.54379 * 9 8 6 35 35 H 1.09006 * 109.60949 * 5.05555 * 9 8 6 36 36 H 1.08990 * 109.74442 * 289.85186 * 10 9 8 37 37 H 1.08998 * 109.67397 * 169.38645 * 10 9 8 38 38 H 0.96995 * 120.00245 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.60576 * 295.48616 * 20 11 10 40 40 H 1.09002 * 109.74562 * 175.05758 * 20 11 10 41 41 H 1.08999 * 109.61306 * 354.94795 * 21 8 6 42 42 H 1.09005 * 109.60846 * 115.29017 * 21 8 6 43 43 H 1.08998 * 111.10289 * 206.29891 * 22 4 2 44 44 H 1.08998 * 111.00028 * 82.38649 * 22 4 2 45 45 H 1.08998 * 110.37549 * 278.18124 * 23 22 4 46 46 H 1.09005 * 110.37110 * 155.95650 * 23 22 4 47 47 H 1.08002 * 120.03434 * 359.97438 * 26 25 24 48 48 H 1.07997 * 119.96291 * 180.25390 * 27 26 25 49 49 H 1.07992 * 119.92991 * 179.76374 * 28 27 26 50 50 H 1.08003 * 119.96431 * 180.02562 * 29 28 27 51 51 H 1.07998 * 120.03552 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0584 -0.7493 1.2412 5 1 1.3099 -1.4463 1.6182 6 6 2.4675 0.2237 2.3168 7 8 2.3550 1.4166 2.1301 8 7 2.9585 -0.2320 3.4864 9 6 3.0947 -1.6751 3.7290 10 6 4.5555 -1.9672 4.1121 11 7 4.9584 -1.0301 5.1701 12 6 5.4563 -1.4930 6.3586 13 1 5.3841 -0.8846 7.2481 14 6 6.0539 -2.7444 6.4205 15 7 5.9069 -3.4916 7.4940 16 14 7.0668 -3.3679 4.9801 17 1 8.5026 -3.0762 5.2215 18 1 6.8763 -4.8339 4.8389 19 1 6.6264 -2.6894 3.7348 20 6 4.8169 0.4130 4.9296 21 6 3.3609 0.7052 4.5445 22 6 3.2961 -1.5115 0.6904 23 6 2.8221 -1.8799 -0.7376 24 7 2.0316 -0.7147 -1.1881 25 6 0.9782 -1.1136 -2.0140 26 6 0.6886 -0.3969 -3.1682 27 6 -0.3505 -0.7970 -3.9851 28 6 -1.1093 -1.9033 -3.6497 29 6 -0.8271 -2.6160 -2.4986 30 6 0.2144 -2.2248 -1.6803 31 1 -0.3634 -1.0191 0.1325 32 1 -0.3634 0.6242 0.8163 33 1 -0.3633 0.3949 -0.9487 34 1 2.4336 -1.9733 4.5426 35 1 2.8355 -2.2243 2.8237 36 1 5.1980 -1.8345 3.2417 37 1 4.6414 -2.9904 4.4776 38 1 6.3242 -4.3661 7.5371 39 1 5.4780 0.7150 4.1174 40 1 5.0735 0.9640 5.8344 41 1 3.2775 1.7283 4.1781 42 1 2.7163 0.5742 5.4137 43 1 3.4988 -2.4070 1.2777 44 1 4.1711 -0.8624 0.6561 45 1 2.1993 -2.7740 -0.7118 46 1 3.6788 -2.0339 -1.3938 47 1 1.2778 0.4701 -3.4282 48 1 -0.5735 -0.2427 -4.8848 49 1 -1.9237 -2.2118 -4.2882 50 1 -1.4214 -3.4798 -2.2397 51 1 0.4339 -2.7816 -0.7813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356482801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:00 Heat of formation + Delta-G solvation = 56.103441 kcal Electronic energy + Delta-G solvation = -31274.747371 eV Core-core repulsion = 27368.789470 eV Total energy + Delta-G solvation = -3905.957901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.25266 -39.70354 -37.84059 -36.94346 -34.09412 -32.99934 -31.56492 -31.54935 -31.19169 -30.68747 -28.74803 -27.36824 -26.04993 -23.77244 -23.34495 -23.05547 -22.69994 -21.76742 -20.81455 -19.90798 -18.67256 -17.54654 -17.41948 -16.45955 -16.24479 -15.82419 -15.36014 -15.18971 -15.09123 -14.72012 -14.63718 -14.29830 -13.96517 -13.93925 -13.82386 -13.64966 -13.24071 -12.91683 -12.62919 -12.53606 -12.44758 -12.32302 -12.18921 -11.96675 -11.87324 -11.68699 -11.46631 -11.36953 -11.05124 -11.02279 -10.89278 -10.80260 -10.48432 -10.35516 -10.21442 -9.50025 -9.48040 -9.15892 -9.05063 -8.80703 -8.42877 -8.27018 -7.10362 -6.12766 -3.33024 1.05093 1.16570 2.79353 3.19758 3.30385 3.42777 3.48550 3.50538 3.62418 4.30205 4.42817 4.46590 4.59346 4.67409 4.72217 4.78081 4.83842 4.93845 5.00147 5.11148 5.17877 5.19204 5.25021 5.30875 5.38506 5.41727 5.49413 5.52365 5.56358 5.65330 5.74141 5.75966 5.80328 5.86408 5.91931 5.97123 6.01743 6.06875 6.14278 6.15584 6.21990 6.27998 6.29231 6.43495 6.51860 6.57884 6.65858 6.69475 6.87270 7.22290 7.70793 7.80898 8.18828 8.38203 8.82218 9.61438 9.99649 11.01421 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019031 B = 0.002847 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.924348 B = 9831.712518 C =10605.477554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.091 3.909 3 H 0.111 0.889 4 C -0.126 4.126 5 H 0.100 0.900 6 C 0.523 3.477 7 O -0.551 6.551 8 N -0.595 5.595 9 C 0.079 3.921 10 C 0.133 3.867 11 N -0.600 5.600 12 C -0.273 4.273 13 H 0.084 0.916 14 C 0.036 3.964 15 N -0.882 5.882 16 Si 0.834 3.166 17 H -0.293 1.293 18 H -0.293 1.293 19 H -0.254 1.254 20 C 0.134 3.866 21 C 0.095 3.905 22 C -0.121 4.121 23 C 0.041 3.959 24 N -0.492 5.492 25 C 0.103 3.897 26 C -0.104 4.104 27 C -0.113 4.113 28 C -0.131 4.131 29 C -0.111 4.111 30 C -0.152 4.152 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.263 0.737 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.059 0.941 46 H 0.087 0.913 47 H 0.127 0.873 48 H 0.123 0.877 49 H 0.119 0.881 50 H 0.120 0.880 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.157 2.025 -20.231 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.015 4.015 3 H 0.129 0.871 4 C -0.148 4.148 5 H 0.118 0.882 6 C 0.310 3.690 7 O -0.430 6.430 8 N -0.327 5.327 9 C -0.045 4.045 10 C 0.006 3.994 11 N -0.323 5.323 12 C -0.400 4.400 13 H 0.102 0.898 14 C -0.165 4.165 15 N -0.522 5.522 16 Si 0.661 3.339 17 H -0.221 1.221 18 H -0.220 1.220 19 H -0.179 1.179 20 C 0.007 3.993 21 C -0.028 4.028 22 C -0.159 4.159 23 C -0.086 4.086 24 N -0.213 5.213 25 C 0.008 3.992 26 C -0.123 4.123 27 C -0.132 4.132 28 C -0.149 4.149 29 C -0.130 4.130 30 C -0.172 4.172 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.105 0.895 47 H 0.145 0.855 48 H 0.141 0.859 49 H 0.137 0.863 50 H 0.138 0.862 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.829 2.853 -20.448 24.308 hybrid contribution 0.269 -1.250 -0.091 1.282 sum -12.560 1.602 -20.539 24.129 Atomic orbital electron populations 1.22449 0.95175 1.02114 1.02741 1.22364 0.94193 0.99573 0.85331 0.87119 1.22618 0.99348 0.97790 0.95088 0.88169 1.20155 0.77266 0.88974 0.82584 1.90636 1.55910 1.16621 1.79821 1.47981 1.61902 1.07969 1.14839 1.22764 1.00964 0.79779 1.01024 1.21826 0.90811 0.95010 0.91766 1.44285 1.72892 0.99699 1.15433 1.18803 1.33951 1.01828 0.85425 0.89826 1.25164 0.99359 0.96076 0.95922 1.70088 1.42195 1.09546 1.30377 0.87701 0.83014 0.77517 0.85661 1.22072 1.22020 1.17888 1.21328 0.92460 0.86145 0.99331 1.22225 0.98006 0.93214 0.89393 1.22931 0.97142 1.00763 0.95099 1.23247 0.97823 0.91814 0.95698 1.61466 1.19689 1.23515 1.16606 1.18870 0.91973 0.94196 0.94147 1.21027 0.97676 1.00181 0.93433 1.21090 0.95567 0.97026 0.99525 1.21131 1.00123 0.96177 0.97438 1.21012 0.97418 0.99697 0.94861 1.21673 0.96539 0.98834 1.00134 0.92266 0.91734 0.91587 0.90982 0.90374 0.94720 0.90603 0.92711 0.95540 0.90709 0.89673 0.91513 0.89123 0.89679 0.92291 0.89480 0.85458 0.85939 0.86263 0.86237 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 7.79 37.16 0.29 -1.55 16 2 C 0.09 1.11 3.39 -66.73 -0.23 0.89 16 3 H 0.11 1.63 6.81 -51.93 -0.35 1.28 16 4 C -0.13 -1.55 1.87 -89.79 -0.17 -1.72 16 5 H 0.10 1.10 7.39 -51.93 -0.38 0.72 16 6 C 0.52 8.26 7.06 -10.98 -0.08 8.18 16 7 O -0.55 -10.19 14.82 5.56 0.08 -10.11 16 8 N -0.60 -9.74 2.94 -172.19 -0.51 -10.25 16 9 C 0.08 1.26 6.16 -3.37 -0.02 1.24 16 10 C 0.13 2.62 4.51 -3.36 -0.02 2.60 16 11 N -0.60 -13.40 2.74 -171.74 -0.47 -13.87 16 12 C -0.27 -7.20 9.89 -15.06 -0.15 -7.35 16 13 H 0.08 2.36 8.04 -52.48 -0.42 1.94 16 14 C 0.04 0.98 4.88 -17.43 -0.09 0.89 16 15 N -0.88 -25.64 13.97 55.49 0.78 -24.87 16 16 Si 0.83 20.08 26.29 -169.99 -4.47 15.61 16 17 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.25 -5.70 4.72 56.52 0.27 -5.43 16 20 C 0.13 2.56 6.67 -3.57 -0.02 2.54 16 21 C 0.10 1.63 6.59 -3.58 -0.02 1.60 16 22 C -0.12 -1.38 5.74 -24.43 -0.14 -1.52 16 23 C 0.04 0.42 6.51 -2.30 -0.01 0.40 16 24 N -0.49 -5.58 5.17 -160.45 -0.83 -6.41 16 25 C 0.10 1.07 3.17 -83.79 -0.27 0.80 16 26 C -0.10 -1.01 9.41 -39.38 -0.37 -1.38 16 27 C -0.11 -0.93 10.04 -39.62 -0.40 -1.33 16 28 C -0.13 -1.03 10.04 -39.55 -0.40 -1.42 16 29 C -0.11 -0.93 10.04 -39.61 -0.40 -1.32 16 30 C -0.15 -1.42 6.47 -39.38 -0.25 -1.68 16 31 H 0.06 0.60 5.95 -51.93 -0.31 0.29 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.73 6.60 -51.93 -0.34 0.38 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 0.99 4.02 -51.93 -0.21 0.79 16 36 H 0.04 0.69 6.71 -51.93 -0.35 0.34 16 37 H 0.08 1.61 5.27 -51.93 -0.27 1.34 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 1.39 7.92 -51.93 -0.41 0.98 16 41 H 0.08 1.42 6.99 -51.93 -0.36 1.06 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 0.95 6.33 -51.93 -0.33 0.63 16 44 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 45 H 0.06 0.54 5.61 -51.93 -0.29 0.25 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 48 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 49 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 50 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 51 H 0.12 1.07 6.44 -52.49 -0.34 0.73 16 LS Contribution 378.51 15.07 5.70 5.70 Total: -1.00 -30.73 378.51 -10.32 -41.05 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.87 Total: 3.29 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.74 Total: -0.15 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -1.03 Total: -55.40 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.47 Total: 15.61 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.73 -10.32 -41.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356482801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.155 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds