Wall clock time and date at job start Wed Apr 1 2020 02:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47103 * 2 1 4 4 H 1.09001 * 109.46908 * 306.28126 * 3 2 1 5 5 C 1.50702 * 109.47118 * 186.28497 * 3 2 1 6 6 H 1.08000 * 119.99446 * 245.69587 * 5 3 2 7 7 C 1.37869 * 120.00385 * 65.69388 * 5 3 2 8 8 N 1.31512 * 120.00364 * 190.97147 * 7 5 3 9 9 Si 1.86802 * 119.99784 * 10.97045 * 7 5 3 10 10 H 1.48504 * 109.47265 * 88.56106 * 9 7 5 11 11 H 1.48504 * 109.47311 * 208.56270 * 9 7 5 12 12 H 1.48499 * 109.47327 * 328.55785 * 9 7 5 13 13 N 1.46897 * 109.47306 * 66.28121 * 3 2 1 14 14 C 1.46899 * 111.00031 * 201.66559 * 13 3 2 15 15 H 1.08994 * 109.47482 * 328.01255 * 14 13 3 16 16 C 1.53007 * 109.47065 * 88.01462 * 14 13 3 17 17 C 1.50700 * 109.47141 * 208.01129 * 14 13 3 18 18 O 1.21286 * 119.99901 * 0.02562 * 17 14 13 19 19 N 1.34776 * 120.00432 * 180.02562 * 17 14 13 20 20 C 1.46499 * 120.00398 * 180.02562 * 19 17 14 21 21 C 1.52994 * 109.47123 * 180.02562 * 20 19 17 22 22 C 1.50700 * 109.47158 * 179.97438 * 21 20 19 23 23 C 1.34234 * 126.50588 * 264.68723 * 22 21 20 24 24 N 1.36825 * 109.93357 * 179.83385 * 23 22 21 25 25 H 0.96998 * 125.06706 * 180.18911 * 24 23 22 26 26 C 1.37682 * 109.87211 * 0.44578 * 24 23 22 27 27 C 1.39134 * 133.50808 * 179.71778 * 26 24 23 28 28 C 1.37748 * 119.77749 * 180.02562 * 27 26 24 29 29 C 1.38835 * 120.66902 * 359.97438 * 28 27 26 30 30 C 1.36629 * 120.52556 * 0.02562 * 29 28 27 31 31 C 1.39629 * 119.76427 * 359.97438 * 30 29 28 32 32 H 1.09004 * 109.46592 * 184.25805 * 1 2 3 33 33 H 1.08997 * 109.47023 * 304.25864 * 1 2 3 34 34 H 1.09001 * 109.47123 * 64.26373 * 1 2 3 35 35 H 1.09000 * 109.47675 * 239.99394 * 2 1 3 36 36 H 1.09007 * 109.46944 * 119.99379 * 2 1 3 37 37 H 0.97004 * 120.00069 * 179.97438 * 8 7 5 38 38 H 1.00905 * 111.00035 * 325.61748 * 13 3 2 39 39 H 1.09001 * 109.46921 * 65.00083 * 16 14 13 40 40 H 1.08997 * 109.46890 * 185.00036 * 16 14 13 41 41 H 1.08999 * 109.46751 * 305.00355 * 16 14 13 42 42 H 0.97000 * 119.99652 * 0.02562 * 19 17 14 43 43 H 1.09003 * 109.46903 * 299.99600 * 20 19 17 44 44 H 1.08994 * 109.47024 * 59.99943 * 20 19 17 45 45 H 1.09008 * 109.47392 * 299.99954 * 21 20 19 46 46 H 1.09004 * 109.47801 * 59.99754 * 21 20 19 47 47 H 1.08004 * 125.03238 * 359.97438 * 23 22 21 48 48 H 1.07996 * 120.10998 * 359.97438 * 27 26 24 49 49 H 1.08001 * 119.66397 * 180.02562 * 28 27 26 50 50 H 1.07999 * 119.73782 * 180.02562 * 29 28 27 51 51 H 1.07999 * 120.11219 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5877 1.9877 -0.8284 5 6 3.5390 1.4454 -0.1555 6 1 4.1647 1.8000 0.6501 7 6 4.1115 0.9953 -1.3262 8 7 5.4095 0.7931 -1.3882 9 14 3.0434 0.6725 -2.8244 10 1 2.9179 1.9196 -3.6209 11 1 3.6669 -0.3866 -3.6580 12 1 1.6962 0.2278 -2.3854 13 7 1.6780 2.0899 1.2680 14 6 1.6729 3.5524 1.1297 15 1 2.4258 3.8510 0.4004 16 6 0.2932 4.0152 0.6572 17 6 1.9856 4.1839 2.4618 18 8 2.1928 3.4846 3.4308 19 7 2.0350 5.5259 2.5764 20 6 2.3395 6.1399 3.8712 21 6 2.3328 7.6630 3.7275 22 6 2.6454 8.2946 5.0596 23 6 1.7557 8.7378 5.9617 24 7 2.4094 9.2448 7.0515 25 1 1.9783 9.6211 7.8347 26 6 3.7705 9.1466 6.8683 27 6 4.8695 9.5064 7.6419 28 6 6.1430 9.2728 7.1717 29 6 6.3426 8.6805 5.9320 30 6 5.2777 8.3192 5.1560 31 6 3.9781 8.5468 5.6130 32 1 -0.3633 -1.0249 0.0763 33 1 -0.3633 0.5785 0.8493 34 1 -0.3633 0.4462 -0.9257 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 5.8122 0.4761 -2.2118 38 1 0.7871 1.7553 1.6034 39 1 -0.4469 3.7957 1.4268 40 1 0.3147 5.0886 0.4694 41 1 0.0289 3.4908 -0.2611 42 1 1.8689 6.0852 1.8015 43 1 1.5871 5.8409 4.6010 44 1 3.3227 5.8106 4.2071 45 1 3.0850 7.9625 2.9975 46 1 1.3494 7.9921 3.3916 47 1 0.6827 8.6978 5.8455 48 1 4.7246 9.9681 8.6074 49 1 6.9948 9.5524 7.7739 50 1 7.3476 8.5039 5.5783 51 1 5.4407 7.8593 4.1925 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566428891.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:22 Heat of formation + Delta-G solvation = -6.900603 kcal Electronic energy + Delta-G solvation = -29158.837466 eV Core-core repulsion = 25250.147505 eV Total energy + Delta-G solvation = -3908.689961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.16269 -40.76280 -38.33841 -37.82152 -36.42654 -34.92461 -33.99094 -33.54839 -31.38579 -30.34489 -30.15392 -28.79345 -28.28302 -25.48603 -24.35964 -23.75113 -23.37706 -22.67154 -21.54736 -21.29186 -20.13427 -18.82769 -18.69111 -17.86143 -17.32774 -17.31766 -16.65707 -16.41797 -16.30652 -15.95413 -15.72065 -15.30569 -15.11701 -14.82769 -14.79828 -14.66447 -14.54203 -14.26641 -13.68693 -13.67251 -13.50656 -13.38940 -13.27788 -13.05770 -12.94438 -12.68736 -12.66493 -12.54497 -12.47035 -12.27087 -12.10339 -12.03706 -11.75093 -11.65455 -11.19636 -11.09045 -10.72971 -10.57549 -10.46379 -9.98797 -9.13945 -8.93892 -8.55221 -8.23201 -6.24319 0.21818 0.69849 1.38337 1.39537 1.50500 1.70132 1.81985 2.23944 2.36267 2.39481 2.98595 3.09515 3.57654 3.81887 3.89643 3.93474 4.14867 4.18252 4.21569 4.25923 4.30238 4.37692 4.40001 4.45003 4.46332 4.53440 4.54550 4.65128 4.73980 4.81779 4.83843 4.89954 4.96218 4.97923 5.07434 5.10857 5.14415 5.20520 5.25233 5.31099 5.34170 5.52106 5.57379 5.58522 5.71126 5.79249 5.82186 5.84966 6.10518 6.25545 6.45677 6.74168 6.75839 6.82791 6.99375 7.40418 7.45538 8.94768 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016065 B = 0.002127 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.496466 B =13163.008086 C =14209.352646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.205 3.795 4 H 0.009 0.991 5 C -0.505 4.505 6 H 0.016 0.984 7 C 0.008 3.992 8 N -0.953 5.953 9 Si 0.931 3.069 10 H -0.272 1.272 11 H -0.293 1.293 12 H -0.213 1.213 13 N -0.676 5.676 14 C 0.071 3.929 15 H 0.090 0.910 16 C -0.164 4.164 17 C 0.517 3.483 18 O -0.573 6.573 19 N -0.720 5.720 20 C 0.133 3.867 21 C -0.038 4.038 22 C -0.199 4.199 23 C 0.074 3.926 24 N -0.586 5.586 25 H 0.431 0.569 26 C 0.075 3.925 27 C -0.134 4.134 28 C -0.109 4.109 29 C -0.157 4.157 30 C -0.097 4.097 31 C -0.128 4.128 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.337 0.663 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.414 0.586 43 H 0.059 0.941 44 H 0.030 0.970 45 H 0.074 0.926 46 H 0.106 0.894 47 H 0.207 0.793 48 H 0.144 0.856 49 H 0.148 0.852 50 H 0.132 0.868 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.043 22.372 12.991 28.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.096 3.904 4 H 0.027 0.973 5 C -0.544 4.544 6 H 0.035 0.965 7 C -0.189 4.189 8 N -0.594 5.594 9 Si 0.755 3.245 10 H -0.197 1.197 11 H -0.219 1.219 12 H -0.135 1.135 13 N -0.309 5.309 14 C -0.043 4.043 15 H 0.108 0.892 16 C -0.223 4.223 17 C 0.304 3.696 18 O -0.451 6.451 19 N -0.374 5.374 20 C 0.009 3.991 21 C -0.076 4.076 22 C -0.207 4.207 23 C -0.054 4.054 24 N -0.190 5.190 25 H 0.271 0.729 26 C -0.032 4.032 27 C -0.154 4.154 28 C -0.128 4.128 29 C -0.176 4.176 30 C -0.115 4.115 31 C -0.133 4.133 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.158 0.842 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.251 0.749 43 H 0.077 0.923 44 H 0.049 0.951 45 H 0.092 0.908 46 H 0.124 0.876 47 H 0.224 0.776 48 H 0.161 0.839 49 H 0.166 0.834 50 H 0.150 0.850 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.219 21.829 13.960 28.648 hybrid contribution -0.063 -0.032 -1.087 1.089 sum -12.282 21.797 12.873 28.137 Atomic orbital electron populations 1.21827 0.94512 1.02296 1.01717 1.22062 0.96117 0.98040 1.00948 1.19307 0.93130 0.91372 0.86591 0.97325 1.21251 0.91899 1.41432 0.99805 0.96516 1.25901 0.96086 0.94691 1.02195 1.70135 1.13093 1.47916 1.28213 0.86188 0.81720 0.78213 0.78428 1.19737 1.21935 1.13537 1.59861 1.36496 1.03223 1.31290 1.21423 0.99793 0.89744 0.93322 0.89219 1.22372 0.94225 1.03662 1.02020 1.21090 0.75451 0.82416 0.90689 1.90634 1.49842 1.63273 1.41310 1.45887 1.72505 1.05863 1.13162 1.21228 0.99437 0.93548 0.84866 1.19944 1.03908 0.90420 0.93342 1.20177 0.90822 1.10591 0.99112 1.22186 0.99140 0.97943 0.86092 1.41751 1.03565 1.54460 1.19187 0.72936 1.18504 0.85316 1.02925 0.96483 1.20365 0.90166 1.04421 1.00478 1.21143 0.96898 0.98754 0.95997 1.20927 0.99080 1.01753 0.95813 1.20487 0.91428 0.99586 1.00038 1.19460 0.93904 1.04171 0.95730 0.91655 0.92076 0.92437 0.92763 0.93648 0.92795 0.84208 0.91408 0.88837 0.91383 0.74911 0.92293 0.95133 0.90760 0.87573 0.77614 0.83857 0.83437 0.85024 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 9.81 71.98 0.71 -3.76 16 2 C -0.13 -5.56 4.77 30.59 0.15 -5.42 16 3 C 0.20 9.41 1.42 44.17 0.06 9.47 16 4 H 0.01 0.40 6.12 -2.39 -0.01 0.39 16 5 C -0.51 -29.79 8.78 25.60 0.22 -29.57 16 6 H 0.02 1.15 8.06 -2.91 -0.02 1.13 16 7 C 0.01 0.45 5.38 84.65 0.46 0.91 16 8 N -0.95 -61.38 13.96 21.44 0.30 -61.08 16 9 Si 0.93 42.71 25.80 68.60 1.77 44.48 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 12 H -0.21 -8.49 5.23 99.48 0.52 -7.97 16 13 N -0.68 -28.72 5.54 -477.15 -2.64 -31.36 16 14 C 0.07 2.53 2.80 44.17 0.12 2.65 16 15 H 0.09 3.56 7.48 -2.39 -0.02 3.54 16 16 C -0.16 -3.90 9.01 71.98 0.65 -3.25 16 17 C 0.52 18.89 7.22 87.66 0.63 19.53 16 18 O -0.57 -26.80 16.43 -3.05 -0.05 -26.85 16 19 N -0.72 -18.73 5.46 -463.07 -2.53 -21.26 16 20 C 0.13 3.32 5.66 86.38 0.49 3.81 16 21 C -0.04 -0.65 5.86 29.85 0.17 -0.47 16 22 C -0.20 -3.82 5.57 -18.63 -0.10 -3.93 16 23 C 0.07 0.98 11.73 83.00 0.97 1.95 16 24 N -0.59 -7.75 6.07 -187.61 -1.14 -8.89 16 25 H 0.43 2.70 8.96 -92.71 -0.83 1.87 16 26 C 0.08 1.47 7.28 39.03 0.28 1.75 16 27 C -0.13 -2.27 10.08 22.37 0.23 -2.05 16 28 C -0.11 -1.91 10.01 22.30 0.22 -1.69 16 29 C -0.16 -3.30 9.97 22.04 0.22 -3.08 16 30 C -0.10 -2.36 10.05 22.23 0.22 -2.13 16 31 C -0.13 -3.00 6.35 -20.20 -0.13 -3.13 16 32 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.06 1.70 6.36 -2.39 -0.02 1.69 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 2.35 4.61 -2.39 -0.01 2.34 16 36 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 38 H 0.34 12.65 6.23 -89.69 -0.56 12.09 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 1.58 7.71 -2.39 -0.02 1.56 16 41 H 0.07 1.63 7.57 -2.39 -0.02 1.61 16 42 H 0.41 7.68 7.99 -92.71 -0.74 6.94 16 43 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.21 1.08 8.06 -2.91 -0.02 1.06 16 48 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 49 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 50 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 51 H 0.11 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -86.11 409.27 -0.06 -86.18 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: -1.36 Total: 37.19 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 5.58 Total: -18.40 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -6.01 Total: -122.59 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.05 Total: -26.85 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.77 Total: 44.48 kcal Total: -86.11 -0.06 -86.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566428891.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.276 kcal (2) G-P(sol) polarization free energy of solvation -86.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds