Wall clock time and date at job start Wed Apr 1 2020 01:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36886 * 126.39925 * 2 1 4 4 C 1.34666 * 106.81906 * 180.25158 * 3 2 1 5 5 N 1.34126 * 108.02226 * 359.74508 * 4 3 2 6 6 C 1.30508 * 109.25393 * 359.97438 * 5 4 3 7 7 C 1.50705 * 125.64703 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.46720 * 165.02936 * 7 6 5 9 9 N 1.46896 * 109.47291 * 45.02514 * 7 6 5 10 10 C 1.46892 * 111.00058 * 121.70325 * 9 7 6 11 11 C 1.50706 * 109.47398 * 184.89197 * 10 9 7 12 12 C 1.38627 * 119.74885 * 89.99859 * 11 10 9 13 13 C 1.37621 * 120.25100 * 180.23514 * 12 11 10 14 14 C 1.40714 * 119.73777 * 359.51923 * 13 12 11 15 15 C 1.41400 * 120.23865 * 180.22879 * 14 13 12 16 16 H 1.08008 * 119.99394 * 206.65694 * 15 14 13 17 17 C 1.39938 * 120.00396 * 26.66381 * 15 14 13 18 18 N 1.30825 * 119.99911 * 11.88949 * 17 15 14 19 19 Si 1.86798 * 120.00122 * 191.89149 * 17 15 14 20 20 H 1.48508 * 109.47086 * 89.99927 * 19 17 15 21 21 H 1.48500 * 109.47051 * 209.99353 * 19 17 15 22 22 H 1.48496 * 109.47295 * 329.99761 * 19 17 15 23 23 C 1.40711 * 119.51587 * 0.47998 * 14 13 12 24 24 C 1.37617 * 119.74267 * 359.74513 * 23 14 13 25 25 C 1.52999 * 109.46792 * 285.02358 * 7 6 5 26 26 C 1.53003 * 109.47415 * 301.19643 * 25 7 6 27 27 C 1.52997 * 109.47399 * 61.19803 * 25 7 6 28 28 C 1.52999 * 109.46809 * 181.19891 * 25 7 6 29 29 O 1.42905 * 109.47268 * 61.61032 * 28 25 7 30 30 H 1.09000 * 109.46932 * 270.18930 * 1 2 3 31 31 H 1.08999 * 109.46781 * 30.18672 * 1 2 3 32 32 H 1.09000 * 109.47046 * 150.18820 * 1 2 3 33 33 H 1.07999 * 126.58998 * 359.97438 * 3 2 1 34 34 H 1.08002 * 125.99223 * 179.72048 * 4 3 2 35 35 H 1.00901 * 110.99964 * 245.65872 * 9 7 6 36 36 H 1.09002 * 109.47407 * 64.88809 * 10 9 7 37 37 H 1.09000 * 109.47358 * 304.89074 * 10 9 7 38 38 H 1.08011 * 119.88017 * 359.95812 * 12 11 10 39 39 H 1.07999 * 120.13085 * 179.71608 * 13 12 11 40 40 H 0.97005 * 120.00307 * 180.02562 * 18 17 15 41 41 H 1.08001 * 120.13333 * 179.73563 * 23 14 13 42 42 H 1.08003 * 119.87505 * 180.02562 * 24 23 14 43 43 H 1.08999 * 109.46812 * 60.00173 * 26 25 7 44 44 H 1.09000 * 109.47337 * 180.02562 * 26 25 7 45 45 H 1.09000 * 109.47163 * 300.00194 * 26 25 7 46 46 H 1.09004 * 109.47139 * 63.28859 * 27 25 7 47 47 H 1.09002 * 109.47173 * 183.28328 * 27 25 7 48 48 H 1.08993 * 109.47370 * 303.29007 * 27 25 7 49 49 H 1.09002 * 109.47335 * 181.60614 * 28 25 7 50 50 H 1.08998 * 109.47476 * 301.60548 * 28 25 7 51 51 H 0.96698 * 114.00188 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5460 0.6505 -0.0057 5 7 3.5096 -0.6903 -0.0034 6 6 2.2663 -1.0870 0.0041 7 6 1.8018 -2.5206 0.0094 8 1 0.7469 -2.5597 0.2806 9 7 2.5874 -3.2862 0.9865 10 6 1.7163 -3.8989 1.9982 11 6 2.5620 -4.5731 3.0476 12 6 2.9706 -3.8602 4.1641 13 6 3.7472 -4.4643 5.1264 14 6 4.1178 -5.8136 4.9786 15 6 4.9114 -6.4461 5.9632 16 1 5.5430 -7.2799 5.6940 17 6 4.8784 -5.9920 7.2865 18 7 3.9544 -5.1468 7.6651 19 14 6.1537 -6.5926 8.5122 20 1 7.3274 -5.6830 8.4911 21 1 5.5628 -6.6065 9.8745 22 1 6.5847 -7.9655 8.1455 23 6 3.6974 -6.5274 3.8412 24 6 2.9252 -5.9016 2.8893 25 6 1.9930 -3.1238 -1.3836 26 6 1.1985 -2.3084 -2.4059 27 6 3.4776 -3.0961 -1.7521 28 6 1.4938 -4.5700 -1.3860 29 8 0.0984 -4.5929 -1.0786 30 1 -0.3633 0.0034 1.0277 31 1 -0.3633 0.8883 -0.5167 32 1 -0.3633 -0.8917 -0.5109 33 1 1.9613 2.1345 -0.0004 34 1 4.4369 1.2611 -0.0115 35 1 3.1547 -3.9832 0.5279 36 1 1.0704 -4.6371 1.5226 37 1 1.1038 -3.1278 2.4655 38 1 2.6822 -2.8255 4.2771 39 1 4.0683 -3.9057 5.9932 40 1 3.9317 -4.8317 8.5822 41 1 3.9796 -7.5623 3.7155 42 1 2.6009 -6.4476 2.0157 43 1 1.5541 -1.2780 -2.4041 44 1 1.3343 -2.7384 -3.3982 45 1 0.1408 -2.3282 -2.1434 46 1 4.0360 -3.7244 -1.0582 47 1 3.6072 -3.4717 -2.7671 48 1 3.8475 -2.0725 -1.6935 49 1 1.6561 -5.0089 -2.3705 50 1 2.0401 -5.1443 -0.6378 51 1 -0.2863 -5.4799 -1.0622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602879510.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:18 Heat of formation + Delta-G solvation = 32.694600 kcal Electronic energy + Delta-G solvation = -30776.482920 eV Core-core repulsion = 26869.509936 eV Total energy + Delta-G solvation = -3906.972984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.03801 -39.07111 -37.53715 -35.85648 -34.24947 -33.92112 -33.03747 -30.41255 -29.42116 -29.09859 -27.40532 -27.14559 -26.52503 -26.00949 -24.61538 -22.78709 -21.12778 -20.88519 -20.33606 -19.82659 -18.52556 -17.51991 -17.23405 -16.93736 -16.48127 -15.48049 -15.29876 -15.02887 -14.75861 -14.47125 -13.95569 -13.83430 -13.73134 -13.61413 -13.40755 -13.02154 -12.96576 -12.85903 -12.68077 -12.53349 -12.35190 -12.27333 -11.98108 -11.87235 -11.59631 -11.46777 -11.24530 -11.04609 -10.91536 -10.84449 -10.61529 -10.37037 -10.31880 -10.12950 -9.60155 -9.55805 -9.39272 -9.27785 -9.13753 -8.18542 -7.97125 -7.36901 -7.21090 -6.65151 -4.30630 2.17381 2.76736 2.87210 3.10750 3.14313 3.14715 3.22950 3.39329 3.98455 4.03810 4.38518 4.55392 4.60420 4.63909 4.76717 4.89329 4.96486 4.97901 5.10888 5.22480 5.29071 5.34181 5.41992 5.47564 5.60276 5.66554 5.77490 5.80273 5.88479 5.88845 5.91904 6.01153 6.06016 6.15880 6.27996 6.39334 6.44002 6.49462 6.51971 6.93543 7.01988 7.13891 7.26181 7.36976 7.43456 7.43749 7.48209 7.68379 7.78268 7.94750 8.13215 8.22236 8.37382 8.40821 8.72618 8.96836 9.04826 10.27877 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014433 B = 0.002756 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.535531 B =10155.943432 C =11128.716414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.462 5.462 3 C -0.073 4.073 4 C -0.032 4.032 5 N -0.463 5.463 6 C 0.236 3.764 7 C 0.184 3.816 8 H 0.079 0.921 9 N -0.662 5.662 10 C 0.127 3.873 11 C -0.204 4.204 12 C -0.079 4.079 13 C -0.161 4.161 14 C 0.111 3.889 15 C -0.463 4.463 16 H 0.075 0.925 17 C 0.073 3.927 18 N -0.801 5.801 19 Si 0.910 3.090 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.225 4.225 24 C -0.088 4.088 25 C -0.072 4.072 26 C -0.133 4.133 27 C -0.146 4.146 28 C 0.081 3.919 29 O -0.570 6.570 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.167 0.833 34 H 0.164 0.836 35 H 0.345 0.655 36 H 0.024 0.976 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.278 0.722 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.049 0.951 48 H 0.086 0.914 49 H 0.049 0.951 50 H 0.050 0.950 51 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.436 7.794 -17.597 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.146 5.146 3 C -0.205 4.205 4 C -0.181 4.181 5 N -0.181 5.181 6 C -0.027 4.027 7 C 0.071 3.929 8 H 0.097 0.903 9 N -0.295 5.295 10 C 0.000 4.000 11 C -0.206 4.206 12 C -0.098 4.098 13 C -0.181 4.181 14 C 0.108 3.892 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.143 4.143 18 N -0.427 5.427 19 Si 0.735 3.265 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.244 4.244 24 C -0.106 4.106 25 C -0.074 4.074 26 C -0.191 4.191 27 C -0.203 4.203 28 C 0.003 3.997 29 O -0.376 6.376 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.185 0.815 34 H 0.181 0.819 35 H 0.167 0.833 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.138 0.862 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.105 0.895 49 H 0.068 0.932 50 H 0.068 0.932 51 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.750 8.593 -16.950 20.523 hybrid contribution -0.683 -0.802 0.252 1.083 sum -8.433 7.791 -16.698 20.264 Atomic orbital electron populations 1.22039 0.77454 1.04327 1.03566 1.45292 1.07156 1.06742 1.55391 1.22550 0.91622 0.92180 1.14142 1.22329 0.96071 0.91834 1.07823 1.70275 1.18401 1.10751 1.18646 1.23282 0.85561 0.90277 1.03624 1.19669 0.96500 0.85698 0.91060 0.90258 1.60302 1.23766 1.30771 1.14648 1.20659 0.92752 0.95482 0.91125 1.18881 1.09476 0.94526 0.97695 1.20502 0.98164 0.97063 0.94049 1.21408 1.02201 0.95074 0.99373 1.17628 0.89409 0.91213 0.90899 1.19597 1.22578 1.14642 0.92461 0.90647 1.25889 0.95080 0.93813 0.99542 1.69805 1.28378 1.25734 1.18776 0.86289 0.81058 0.80140 0.79041 1.19349 1.20387 1.18733 1.20942 1.06284 0.98309 0.98892 1.20302 0.99020 0.94014 0.97311 1.20971 0.97104 0.93877 0.95421 1.21770 0.99918 0.99438 0.97999 1.21916 0.93055 1.05061 1.00274 1.22303 0.82002 0.96180 0.99216 1.86424 1.23238 1.33882 1.94036 0.90700 0.89894 0.89492 0.81526 0.81859 0.83252 0.95833 0.92511 0.89727 0.86183 0.91063 0.89231 0.90112 0.92847 0.92645 0.92162 0.91772 0.93217 0.89509 0.93239 0.93154 0.77388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 10.75 59.85 0.64 1.22 16 2 N -0.46 -5.63 3.14 -121.28 -0.38 -6.01 16 3 C -0.07 -0.85 11.58 -16.56 -0.19 -1.05 16 4 C -0.03 -0.44 11.87 -17.81 -0.21 -0.66 16 5 N -0.46 -7.59 9.38 -10.81 -0.10 -7.69 16 6 C 0.24 3.45 4.95 -155.41 -0.77 2.68 16 7 C 0.18 2.52 1.63 -68.86 -0.11 2.41 16 8 H 0.08 1.10 6.02 -51.93 -0.31 0.78 16 9 N -0.66 -10.92 5.94 -109.22 -0.65 -11.57 16 10 C 0.13 2.27 5.47 -4.98 -0.03 2.24 16 11 C -0.20 -4.47 5.46 -104.33 -0.57 -5.04 16 12 C -0.08 -1.92 9.67 -39.66 -0.38 -2.30 16 13 C -0.16 -4.33 8.68 -38.87 -0.34 -4.67 16 14 C 0.11 3.02 5.57 -106.83 -0.60 2.42 16 15 C -0.46 -12.55 9.07 -37.74 -0.34 -12.90 16 16 H 0.08 1.97 7.87 -52.48 -0.41 1.56 16 17 C 0.07 1.88 5.25 -17.34 -0.09 1.79 16 18 N -0.80 -21.22 10.76 55.55 0.60 -20.62 16 19 Si 0.91 19.19 29.58 -169.99 -5.03 14.16 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 22 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 23 C -0.22 -5.56 9.80 -38.87 -0.38 -5.94 16 24 C -0.09 -1.94 9.67 -39.66 -0.38 -2.32 16 25 C -0.07 -0.82 0.37 -154.51 -0.06 -0.88 16 26 C -0.13 -1.37 7.87 37.16 0.29 -1.08 16 27 C -0.15 -1.76 7.96 37.16 0.30 -1.47 16 28 C 0.08 0.83 5.76 37.16 0.21 1.05 16 29 O -0.57 -5.64 12.29 -35.23 -0.43 -6.07 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.69 6.55 -51.93 -0.34 0.35 16 33 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.35 5.63 5.28 -39.29 -0.21 5.42 16 36 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 37 H 0.06 1.03 8.05 -51.93 -0.42 0.61 16 38 H 0.08 1.97 8.06 -52.48 -0.42 1.55 16 39 H 0.12 3.36 6.10 -52.49 -0.32 3.04 16 40 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 41 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 42 H 0.08 1.54 8.06 -52.48 -0.42 1.12 16 43 H 0.05 0.60 7.17 -51.93 -0.37 0.22 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.60 7.05 -51.93 -0.37 0.24 16 46 H 0.06 0.83 6.55 -51.93 -0.34 0.49 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.09 1.22 5.89 -51.93 -0.31 0.91 16 49 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.05 0.57 6.84 -51.93 -0.36 0.21 16 51 H 0.38 2.36 9.12 45.56 0.42 2.77 16 LS Contribution 403.63 15.07 6.08 6.08 Total: -1.00 -31.57 403.63 -10.04 -41.61 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -7.12 Total: 14.58 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -3.01 Total: -24.46 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.53 Total: -45.89 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.43 Total: -6.07 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.57 -10.04 -41.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602879510.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.304 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds