Wall clock time and date at job start Wed Apr 1 2020 01:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36886 * 126.39925 * 2 1 4 4 C 1.34666 * 106.81906 * 180.25158 * 3 2 1 5 5 N 1.34126 * 108.02226 * 359.74508 * 4 3 2 6 6 C 1.30508 * 109.25393 * 359.97438 * 5 4 3 7 7 C 1.50705 * 125.64703 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.46720 * 165.02936 * 7 6 5 9 9 N 1.46896 * 109.47291 * 45.02514 * 7 6 5 10 10 C 1.46892 * 111.00058 * 121.70325 * 9 7 6 11 11 C 1.50706 * 109.47398 * 184.89197 * 10 9 7 12 12 C 1.38627 * 119.74885 * 89.99859 * 11 10 9 13 13 C 1.37621 * 120.25100 * 180.23514 * 12 11 10 14 14 C 1.40714 * 119.73777 * 359.51923 * 13 12 11 15 15 C 1.41400 * 120.23865 * 180.22879 * 14 13 12 16 16 H 1.08008 * 119.99394 * 206.65694 * 15 14 13 17 17 C 1.39938 * 120.00396 * 26.66381 * 15 14 13 18 18 N 1.30825 * 119.99911 * 11.88949 * 17 15 14 19 19 Si 1.86798 * 120.00122 * 191.89149 * 17 15 14 20 20 H 1.48508 * 109.47086 * 89.99927 * 19 17 15 21 21 H 1.48500 * 109.47051 * 209.99353 * 19 17 15 22 22 H 1.48496 * 109.47295 * 329.99761 * 19 17 15 23 23 C 1.40711 * 119.51587 * 0.47998 * 14 13 12 24 24 C 1.37617 * 119.74267 * 359.74513 * 23 14 13 25 25 C 1.52999 * 109.46792 * 285.02358 * 7 6 5 26 26 C 1.53003 * 109.47415 * 301.19643 * 25 7 6 27 27 C 1.52997 * 109.47399 * 61.19803 * 25 7 6 28 28 C 1.52999 * 109.46809 * 181.19891 * 25 7 6 29 29 O 1.42905 * 109.47268 * 61.61032 * 28 25 7 30 30 H 1.09000 * 109.46932 * 270.18930 * 1 2 3 31 31 H 1.08999 * 109.46781 * 30.18672 * 1 2 3 32 32 H 1.09000 * 109.47046 * 150.18820 * 1 2 3 33 33 H 1.07999 * 126.58998 * 359.97438 * 3 2 1 34 34 H 1.08002 * 125.99223 * 179.72048 * 4 3 2 35 35 H 1.00901 * 110.99964 * 245.65872 * 9 7 6 36 36 H 1.09002 * 109.47407 * 64.88809 * 10 9 7 37 37 H 1.09000 * 109.47358 * 304.89074 * 10 9 7 38 38 H 1.08011 * 119.88017 * 359.95812 * 12 11 10 39 39 H 1.07999 * 120.13085 * 179.71608 * 13 12 11 40 40 H 0.97005 * 120.00307 * 180.02562 * 18 17 15 41 41 H 1.08001 * 120.13333 * 179.73563 * 23 14 13 42 42 H 1.08003 * 119.87505 * 180.02562 * 24 23 14 43 43 H 1.08999 * 109.46812 * 60.00173 * 26 25 7 44 44 H 1.09000 * 109.47337 * 180.02562 * 26 25 7 45 45 H 1.09000 * 109.47163 * 300.00194 * 26 25 7 46 46 H 1.09004 * 109.47139 * 63.28859 * 27 25 7 47 47 H 1.09002 * 109.47173 * 183.28328 * 27 25 7 48 48 H 1.08993 * 109.47370 * 303.29007 * 27 25 7 49 49 H 1.09002 * 109.47335 * 181.60614 * 28 25 7 50 50 H 1.08998 * 109.47476 * 301.60548 * 28 25 7 51 51 H 0.96698 * 114.00188 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5460 0.6505 -0.0057 5 7 3.5096 -0.6903 -0.0034 6 6 2.2663 -1.0870 0.0041 7 6 1.8018 -2.5206 0.0094 8 1 0.7469 -2.5597 0.2806 9 7 2.5874 -3.2862 0.9865 10 6 1.7163 -3.8989 1.9982 11 6 2.5620 -4.5731 3.0476 12 6 2.9706 -3.8602 4.1641 13 6 3.7472 -4.4643 5.1264 14 6 4.1178 -5.8136 4.9786 15 6 4.9114 -6.4461 5.9632 16 1 5.5430 -7.2799 5.6940 17 6 4.8784 -5.9920 7.2865 18 7 3.9544 -5.1468 7.6651 19 14 6.1537 -6.5926 8.5122 20 1 7.3274 -5.6830 8.4911 21 1 5.5628 -6.6065 9.8745 22 1 6.5847 -7.9655 8.1455 23 6 3.6974 -6.5274 3.8412 24 6 2.9252 -5.9016 2.8893 25 6 1.9930 -3.1238 -1.3836 26 6 1.1985 -2.3084 -2.4059 27 6 3.4776 -3.0961 -1.7521 28 6 1.4938 -4.5700 -1.3860 29 8 0.0984 -4.5929 -1.0786 30 1 -0.3633 0.0034 1.0277 31 1 -0.3633 0.8883 -0.5167 32 1 -0.3633 -0.8917 -0.5109 33 1 1.9613 2.1345 -0.0004 34 1 4.4369 1.2611 -0.0115 35 1 3.1547 -3.9832 0.5279 36 1 1.0704 -4.6371 1.5226 37 1 1.1038 -3.1278 2.4655 38 1 2.6822 -2.8255 4.2771 39 1 4.0683 -3.9057 5.9932 40 1 3.9317 -4.8317 8.5822 41 1 3.9796 -7.5623 3.7155 42 1 2.6009 -6.4476 2.0157 43 1 1.5541 -1.2780 -2.4041 44 1 1.3343 -2.7384 -3.3982 45 1 0.1408 -2.3282 -2.1434 46 1 4.0360 -3.7244 -1.0582 47 1 3.6072 -3.4717 -2.7671 48 1 3.8475 -2.0725 -1.6935 49 1 1.6561 -5.0089 -2.3705 50 1 2.0401 -5.1443 -0.6378 51 1 -0.2863 -5.4799 -1.0622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602879510.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:17 Heat of formation + Delta-G solvation = 12.600352 kcal Electronic energy + Delta-G solvation = -30777.354272 eV Core-core repulsion = 26869.509936 eV Total energy + Delta-G solvation = -3907.844336 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.00456 -40.12880 -39.27665 -36.82978 -35.82333 -34.81944 -34.53289 -31.95075 -31.14618 -30.55275 -28.45007 -28.18910 -27.70079 -26.84274 -26.00417 -24.31941 -22.82411 -22.11812 -21.61227 -21.25079 -19.50731 -19.19858 -18.27407 -17.90317 -17.47068 -17.16671 -16.45260 -16.10401 -15.89675 -15.71431 -15.51004 -15.42518 -14.88635 -14.74041 -14.51532 -14.27102 -14.00867 -13.93248 -13.78079 -13.74698 -13.47727 -13.44897 -13.30475 -13.15250 -12.99976 -12.86738 -12.72597 -12.71974 -12.25607 -12.17724 -11.94921 -11.76419 -11.51191 -11.41380 -11.19460 -11.04617 -10.87267 -10.62341 -10.35841 -9.32290 -9.30424 -9.15849 -9.08276 -8.56932 -6.33099 0.95877 1.18271 1.23333 1.37406 1.50245 1.52158 1.99794 2.21725 2.34660 2.74812 3.27906 3.39011 3.60097 3.73832 3.82916 3.88860 4.00966 4.11886 4.18975 4.29471 4.32449 4.38103 4.43622 4.53085 4.57441 4.60459 4.62672 4.64502 4.69417 4.73055 4.81668 4.84123 4.91098 4.97878 5.08006 5.09955 5.14233 5.18184 5.29948 5.42242 5.47908 5.49670 5.53529 5.74097 5.94675 5.99985 6.13240 6.16077 6.28657 6.41318 6.42589 6.55881 6.74745 6.90473 6.97397 7.07359 7.40752 8.38377 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014433 B = 0.002756 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.535531 B =10155.943432 C =11128.716414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.462 5.462 3 C -0.056 4.056 4 C -0.068 4.068 5 N -0.503 5.503 6 C 0.216 3.784 7 C 0.191 3.809 8 H 0.081 0.919 9 N -0.676 5.676 10 C 0.140 3.860 11 C -0.191 4.191 12 C -0.090 4.090 13 C -0.187 4.187 14 C 0.077 3.923 15 C -0.501 4.501 16 H 0.074 0.926 17 C 0.030 3.970 18 N -0.834 5.834 19 Si 0.984 3.016 20 H -0.265 1.265 21 H -0.268 1.268 22 H -0.257 1.257 23 C -0.237 4.237 24 C -0.083 4.083 25 C -0.068 4.068 26 C -0.124 4.124 27 C -0.141 4.141 28 C 0.085 3.915 29 O -0.580 6.580 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.204 0.796 34 H 0.174 0.826 35 H 0.346 0.654 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.285 0.715 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.041 0.959 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.049 0.951 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.068 0.932 50 H 0.040 0.960 51 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.967 7.833 -19.404 23.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.145 5.145 3 C -0.190 4.190 4 C -0.216 4.216 5 N -0.221 5.221 6 C -0.048 4.048 7 C 0.078 3.922 8 H 0.099 0.901 9 N -0.309 5.309 10 C 0.012 3.988 11 C -0.192 4.192 12 C -0.109 4.109 13 C -0.206 4.206 14 C 0.075 3.925 15 C -0.531 4.531 16 H 0.092 0.908 17 C -0.183 4.183 18 N -0.461 5.461 19 Si 0.805 3.195 20 H -0.189 1.189 21 H -0.192 1.192 22 H -0.181 1.181 23 C -0.257 4.257 24 C -0.101 4.101 25 C -0.070 4.070 26 C -0.182 4.182 27 C -0.198 4.198 28 C 0.007 3.993 29 O -0.388 6.388 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.110 0.890 33 H 0.221 0.779 34 H 0.191 0.809 35 H 0.168 0.832 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.138 0.862 43 H 0.060 0.940 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.058 0.942 51 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -9.316 8.625 -18.778 22.667 hybrid contribution -0.309 -0.710 0.667 1.022 sum -9.625 7.915 -18.111 21.984 Atomic orbital electron populations 1.22315 0.75200 1.06101 1.04298 1.45517 1.08567 1.06149 1.54284 1.23090 0.90869 0.93529 1.11479 1.22698 0.97761 0.91473 1.09641 1.70186 1.19944 1.12250 1.19769 1.23338 0.85698 0.91084 1.04633 1.19654 0.95800 0.85121 0.91591 0.90102 1.60126 1.24300 1.30868 1.15655 1.20487 0.92162 0.95654 0.90513 1.19318 1.07903 0.94534 0.97448 1.20670 0.98108 0.97471 0.94624 1.21323 1.04149 0.95401 0.99757 1.17965 0.90562 0.91664 0.92292 1.19851 1.23922 1.15672 0.93702 0.90772 1.26768 0.96811 0.93724 1.01038 1.69881 1.29874 1.26821 1.19563 0.85172 0.78053 0.79672 0.76583 1.18948 1.19232 1.18072 1.21193 1.06736 0.98877 0.98870 1.20661 0.97581 0.94160 0.97733 1.20932 0.96795 0.94946 0.94325 1.21674 0.99784 0.98544 0.98164 1.21832 0.93499 1.03474 1.01017 1.22206 0.82202 0.94928 0.99963 1.86381 1.22800 1.35591 1.94063 0.90434 0.86929 0.89036 0.77934 0.80910 0.83190 0.93590 0.92861 0.89402 0.88450 0.90468 0.88346 0.86179 0.94014 0.91393 0.91644 0.93178 0.91325 0.91614 0.91343 0.94159 0.75442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.88 10.75 127.77 1.37 2.25 16 2 N -0.46 -10.43 3.14 -537.61 -1.69 -12.12 16 3 C -0.06 -1.23 11.58 83.08 0.96 -0.26 16 4 C -0.07 -1.87 11.87 83.52 0.99 -0.88 16 5 N -0.50 -16.57 9.38 -188.13 -1.76 -18.33 16 6 C 0.22 6.15 4.95 138.13 0.68 6.83 16 7 C 0.19 4.97 1.63 44.17 0.07 5.04 16 8 H 0.08 2.07 6.02 -2.39 -0.01 2.05 16 9 N -0.68 -21.63 5.94 -499.47 -2.97 -24.59 16 10 C 0.14 4.74 5.47 85.56 0.47 5.21 16 11 C -0.19 -8.21 5.46 -19.68 -0.11 -8.32 16 12 C -0.09 -4.48 9.67 22.22 0.21 -4.26 16 13 C -0.19 -10.49 8.68 22.73 0.20 -10.29 16 14 C 0.08 4.36 5.57 -21.29 -0.12 4.24 16 15 C -0.50 -28.24 9.07 23.46 0.21 -28.03 16 16 H 0.07 4.01 7.87 -2.91 -0.02 3.99 16 17 C 0.03 1.57 5.25 85.25 0.45 2.02 16 18 N -0.83 -45.90 10.76 21.82 0.23 -45.66 16 19 Si 0.98 40.10 29.58 68.60 2.03 42.12 16 20 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 21 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 23 C -0.24 -11.83 9.80 22.73 0.22 -11.60 16 24 C -0.08 -3.56 9.67 22.22 0.21 -3.34 16 25 C -0.07 -1.43 0.37 -52.18 -0.02 -1.45 16 26 C -0.12 -2.24 7.87 71.98 0.57 -1.67 16 27 C -0.14 -3.28 7.96 71.98 0.57 -2.70 16 28 C 0.09 1.51 5.76 71.98 0.41 1.92 16 29 O -0.58 -9.55 12.29 -148.98 -1.83 -11.38 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 1.21 6.55 -2.39 -0.02 1.20 16 33 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 34 H 0.17 4.06 8.06 -2.91 -0.02 4.03 16 35 H 0.35 10.92 5.28 -89.69 -0.47 10.45 16 36 H 0.05 1.37 8.08 -2.39 -0.02 1.35 16 37 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16 38 H 0.09 4.21 8.06 -2.90 -0.02 4.19 16 39 H 0.10 5.81 6.10 -2.91 -0.02 5.79 16 40 H 0.28 14.22 8.30 -92.70 -0.77 13.45 16 41 H 0.10 4.61 8.06 -2.91 -0.02 4.58 16 42 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 43 H 0.04 0.85 7.17 -2.39 -0.02 0.84 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 1.12 7.05 -2.39 -0.02 1.10 16 46 H 0.05 1.28 6.55 -2.38 -0.02 1.27 16 47 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.06 1.84 5.89 -2.39 -0.01 1.83 16 49 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.04 0.80 6.84 -2.39 -0.02 0.78 16 51 H 0.40 3.54 9.12 -74.06 -0.68 2.86 16 Total: -1.00 -71.63 403.63 1.18 -70.45 By element: Atomic # 1 Polarization: 45.02 SS G_CDS: -0.20 Total: 44.82 kcal Atomic # 6 Polarization: -52.67 SS G_CDS: 7.37 Total: -45.31 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -6.18 Total: -100.71 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -1.83 Total: -11.38 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.12 kcal Total: -71.63 1.18 -70.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602879510.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.049 kcal (2) G-P(sol) polarization free energy of solvation -71.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds