Wall clock time and date at job start Wed Apr 1 2020 03:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.76854 * 2 1 4 4 C 1.52788 * 109.77210 * 120.74497 * 2 1 3 5 5 C 1.50602 * 110.85689 * 167.01131 * 4 2 1 6 6 C 1.38990 * 117.60965 * 160.32373 * 5 4 2 7 7 C 1.37904 * 120.58634 * 179.60373 * 6 5 4 8 8 C 1.38261 * 119.82491 * 359.93813 * 7 6 5 9 9 C 1.37959 * 119.71856 * 0.20712 * 8 7 6 10 10 C 1.37667 * 122.87496 * 340.23158 * 5 4 2 11 11 C 1.50808 * 122.35427 * 0.87283 * 10 5 4 12 12 N 1.46682 * 109.66907 * 348.83355 * 11 10 5 13 13 C 1.34771 * 121.34325 * 224.36185 * 12 11 10 14 14 O 1.21589 * 119.99822 * 184.84228 * 13 12 11 15 15 N 1.34775 * 120.00104 * 4.84335 * 13 12 11 16 16 C 1.46506 * 120.00098 * 184.82522 * 15 13 12 17 17 C 1.53042 * 109.45943 * 275.06788 * 16 15 13 18 18 C 1.53193 * 109.31235 * 178.61282 * 17 16 15 19 19 N 1.46927 * 108.77248 * 54.63366 * 18 17 16 20 20 C 1.36939 * 120.62751 * 126.37155 * 19 18 17 21 21 H 1.07998 * 119.99608 * 211.10444 * 20 19 18 22 22 C 1.38806 * 120.00196 * 31.10757 * 20 19 18 23 23 N 1.31626 * 120.00153 * 10.21469 * 22 20 19 24 24 Si 1.86804 * 120.00278 * 190.21417 * 22 20 19 25 25 H 1.48498 * 109.46663 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46853 * 119.99775 * 24 22 20 27 27 H 1.48490 * 109.47261 * 240.00166 * 24 22 20 28 28 C 1.46926 * 118.74116 * 306.38700 * 19 18 17 29 29 C 1.53040 * 109.46048 * 154.99888 * 16 15 13 30 30 H 1.08997 * 109.47557 * 301.41157 * 1 2 3 31 31 H 1.09006 * 109.47024 * 61.40706 * 1 2 3 32 32 H 1.09000 * 109.47572 * 181.40307 * 1 2 3 33 33 H 1.09001 * 109.20281 * 287.36446 * 4 2 1 34 34 H 1.09001 * 109.19969 * 46.65652 * 4 2 1 35 35 H 1.07996 * 119.70516 * 359.57793 * 6 5 4 36 36 H 1.07999 * 120.08580 * 179.97438 * 7 6 5 37 37 H 1.08005 * 120.14439 * 180.18173 * 8 7 6 38 38 H 1.07996 * 119.74719 * 180.02562 * 9 8 7 39 39 H 1.08995 * 109.43785 * 108.89669 * 11 10 5 40 40 H 1.09000 * 109.43605 * 228.77914 * 11 10 5 41 41 H 0.96999 * 119.99721 * 4.81826 * 15 13 12 42 42 H 1.09004 * 109.45869 * 35.02318 * 16 15 13 43 43 H 1.09001 * 109.49431 * 298.56846 * 17 16 15 44 44 H 1.09004 * 109.49752 * 58.66301 * 17 16 15 45 45 H 1.09000 * 109.58466 * 294.84716 * 18 17 16 46 46 H 1.08992 * 109.58327 * 174.42023 * 18 17 16 47 47 H 0.96993 * 120.00047 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.58911 * 293.82813 * 28 19 18 49 49 H 1.08996 * 109.58827 * 173.39594 * 28 19 18 50 50 H 1.09001 * 109.49511 * 301.33635 * 29 16 15 51 51 H 1.08999 * 109.49893 * 61.39985 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8986 1.0257 0.0000 4 6 2.0468 -0.7350 1.2357 5 6 3.5187 -1.0277 1.1090 6 6 4.2239 -1.3006 2.2752 7 6 5.5726 -1.5848 2.2294 8 6 6.2312 -1.6003 1.0138 9 6 5.5344 -1.3268 -0.1451 10 6 4.1776 -1.0360 -0.0997 11 6 3.4795 -0.7322 -1.4015 12 7 2.0282 -0.7097 -1.1900 13 6 1.1849 -1.3144 -2.0499 14 8 -0.0169 -1.2064 -1.9000 15 7 1.6737 -2.0388 -3.0760 16 6 0.7613 -2.6080 -4.0709 17 6 0.2297 -3.9512 -3.5657 18 6 -0.7504 -4.5269 -4.5928 19 7 -0.0806 -4.5956 -5.8987 20 6 -0.0397 -5.7705 -6.6009 21 1 0.8013 -5.9868 -7.2429 22 6 -1.0792 -6.6834 -6.4874 23 7 -2.1909 -6.3417 -5.8710 24 14 -0.9005 -8.3969 -7.2095 25 1 0.4351 -8.5294 -7.8449 26 1 -1.0362 -9.4061 -6.1286 27 1 -1.9579 -8.6175 -8.2284 28 6 0.5448 -3.3798 -6.4368 29 6 1.5104 -2.8171 -5.3890 30 1 -0.3634 0.5356 0.8770 31 1 -0.3633 0.4919 -0.9024 32 1 -0.3634 -1.0273 0.0252 33 1 1.8790 -0.1163 2.1173 34 1 1.5032 -1.6731 1.3483 35 1 3.7112 -1.2896 3.2256 36 1 6.1127 -1.7953 3.1406 37 1 7.2867 -1.8251 0.9717 38 1 6.0483 -1.3392 -1.0948 39 1 3.8074 0.2394 -1.7708 40 1 3.7273 -1.5005 -2.1339 41 1 2.6295 -2.1832 -3.1557 42 1 -0.0728 -1.9248 -4.2316 43 1 1.0608 -4.6429 -3.4284 44 1 -0.2836 -3.8051 -2.6152 45 1 -1.6256 -3.8811 -4.6645 46 1 -1.0558 -5.5271 -4.2857 47 1 -2.9174 -6.9795 -5.7921 48 1 -0.2248 -2.6405 -6.6588 49 1 1.0940 -3.6232 -7.3463 50 1 1.9088 -1.8637 -5.7362 51 1 2.3298 -3.5190 -5.2344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610351149.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:15 Heat of formation + Delta-G solvation = 33.597383 kcal Electronic energy + Delta-G solvation = -30685.828465 eV Core-core repulsion = 26778.894628 eV Total energy + Delta-G solvation = -3906.933837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.95255 -39.44084 -37.67466 -36.13895 -34.74227 -33.50745 -32.02542 -31.74907 -30.75940 -29.88064 -29.13666 -26.88103 -25.92101 -24.90677 -22.96046 -22.34469 -22.17948 -21.79548 -20.91615 -19.70650 -18.95604 -17.47836 -17.12132 -16.70830 -16.22914 -15.91348 -15.16310 -15.07060 -14.88060 -14.62036 -14.32124 -14.06090 -13.80868 -13.66088 -13.47813 -13.42204 -13.09610 -12.95193 -12.61449 -12.46855 -12.30442 -12.28281 -12.13625 -11.92530 -11.44004 -11.36046 -11.34117 -11.01863 -11.00630 -10.86106 -10.73875 -10.30961 -10.15815 -10.01773 -9.73154 -9.59835 -9.17241 -9.08508 -8.85641 -8.75012 -8.52777 -8.33405 -6.59845 -5.74627 -3.23228 1.04005 1.07835 2.63954 3.37759 3.38486 3.42679 3.45615 3.47680 3.98289 4.32287 4.39282 4.50766 4.59655 4.68850 4.83723 4.92734 4.96484 5.10055 5.17703 5.27483 5.35284 5.35944 5.43867 5.46028 5.50334 5.61881 5.67330 5.70939 5.75587 5.81045 5.88888 6.11229 6.14540 6.16153 6.21666 6.25744 6.29707 6.33161 6.41335 6.52943 6.64185 6.69556 6.70242 6.72532 6.84546 6.96565 7.01829 7.12827 7.46962 7.77121 7.82740 8.11941 8.51246 8.80951 9.25586 9.87013 10.45001 11.33168 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015745 B = 0.002527 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.895320 B =11075.599723 C =11680.457083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.164 3.836 3 H 0.073 0.927 4 C -0.097 4.097 5 C -0.063 4.063 6 C -0.121 4.121 7 C -0.119 4.119 8 C -0.123 4.123 9 C -0.113 4.113 10 C -0.096 4.096 11 C 0.155 3.845 12 N -0.632 5.632 13 C 0.709 3.291 14 O -0.576 6.576 15 N -0.741 5.741 16 C 0.169 3.831 17 C -0.146 4.146 18 C 0.174 3.826 19 N -0.593 5.593 20 C -0.253 4.253 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.903 5.903 24 Si 0.904 3.096 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.149 3.851 29 C -0.139 4.139 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.387 0.613 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.020 0.980 46 H 0.091 0.909 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.057 0.943 50 H 0.054 0.946 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.941 14.355 15.442 26.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.060 3.940 3 H 0.091 0.909 4 C -0.135 4.135 5 C -0.064 4.064 6 C -0.139 4.139 7 C -0.137 4.137 8 C -0.141 4.141 9 C -0.131 4.131 10 C -0.097 4.097 11 C 0.031 3.969 12 N -0.371 5.371 13 C 0.411 3.589 14 O -0.453 6.453 15 N -0.397 5.397 16 C 0.066 3.934 17 C -0.187 4.187 18 C 0.048 3.952 19 N -0.316 5.316 20 C -0.382 4.382 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.548 5.548 24 Si 0.734 3.266 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.022 3.978 29 C -0.179 4.179 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.222 0.778 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.109 0.891 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.072 0.928 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.849 14.324 15.508 25.810 hybrid contribution 0.814 -1.067 -0.222 1.361 sum 15.663 13.257 15.286 25.588 Atomic orbital electron populations 1.22162 0.91753 1.04168 1.01167 1.21042 0.96249 0.94211 0.82480 0.90889 1.21008 0.91685 1.01938 0.98891 1.19540 0.95584 0.98859 0.92387 1.21197 0.94495 1.00434 0.97796 1.21084 0.94656 0.99965 0.97966 1.21057 0.99927 1.00539 0.92578 1.21044 0.93368 0.99891 0.98826 1.19812 0.94116 1.01189 0.94605 1.20351 0.80221 1.01967 0.94317 1.47291 1.05155 1.58007 1.26651 1.15875 0.84990 0.78448 0.79557 1.90974 1.13048 1.66751 1.74535 1.45811 1.10398 1.55698 1.27750 1.20897 0.91444 0.95134 0.85955 1.22579 1.00678 0.95296 1.00105 1.20786 0.90716 1.00983 0.82698 1.44084 1.64712 1.05308 1.17513 1.19209 1.01364 0.94358 1.23307 0.91773 1.25180 0.94798 0.99585 0.99985 1.69987 1.04382 1.34201 1.46197 0.86194 0.77453 0.84465 0.78481 1.20281 1.21617 1.21650 1.20840 0.93604 0.89521 0.93843 1.22350 0.99769 0.99920 0.95841 0.94007 0.90648 0.90460 0.89749 0.89871 0.86091 0.86093 0.85948 0.85813 0.90309 0.89433 0.77838 0.90178 0.93044 0.92766 0.96204 0.89118 0.93622 0.96187 0.92413 0.92766 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 7.59 37.16 0.28 -1.39 16 2 C 0.16 1.77 3.46 -67.64 -0.23 1.53 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.10 -0.92 5.21 -28.04 -0.15 -1.07 16 5 C -0.06 -0.62 5.76 -104.60 -0.60 -1.22 16 6 C -0.12 -1.05 9.59 -39.42 -0.38 -1.42 16 7 C -0.12 -0.94 10.04 -39.69 -0.40 -1.34 16 8 C -0.12 -0.96 10.05 -39.67 -0.40 -1.36 16 9 C -0.11 -0.93 9.62 -39.46 -0.38 -1.31 16 10 C -0.10 -0.92 5.82 -104.55 -0.61 -1.53 16 11 C 0.16 1.45 6.20 -5.04 -0.03 1.41 16 12 N -0.63 -7.64 2.93 -172.54 -0.51 -8.14 16 13 C 0.71 10.99 8.21 -86.92 -0.71 10.28 16 14 O -0.58 -10.80 11.57 5.29 0.06 -10.74 16 15 N -0.74 -10.91 4.98 -58.63 -0.29 -11.20 16 16 C 0.17 3.01 2.38 -67.89 -0.16 2.85 16 17 C -0.15 -3.01 5.65 -26.61 -0.15 -3.16 16 18 C 0.17 4.32 5.26 -3.71 -0.02 4.30 16 19 N -0.59 -14.96 2.99 -172.32 -0.51 -15.48 16 20 C -0.25 -6.94 9.59 -15.06 -0.14 -7.09 16 21 H 0.06 1.72 7.85 -52.49 -0.41 1.31 16 22 C 0.00 0.09 5.06 -17.43 -0.09 0.00 16 23 N -0.90 -26.58 11.00 55.49 0.61 -25.97 16 24 Si 0.90 21.81 29.57 -169.99 -5.03 16.78 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 29 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 1.09 6.87 -51.93 -0.36 0.73 16 32 H 0.08 1.15 6.71 -51.93 -0.35 0.80 16 33 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 34 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 35 H 0.12 0.84 8.05 -52.49 -0.42 0.41 16 36 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 37 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 38 H 0.12 0.77 8.05 -52.49 -0.42 0.35 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.74 5.75 -51.93 -0.30 0.44 16 41 H 0.39 4.68 6.19 -40.82 -0.25 4.43 16 42 H 0.08 1.60 7.65 -51.93 -0.40 1.20 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 1.14 8.09 -51.93 -0.42 0.72 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 2.52 6.06 -51.93 -0.31 2.20 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 50 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 390.87 15.07 5.89 5.89 Total: -1.00 -32.14 390.87 -12.38 -44.52 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -8.26 Total: 4.24 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -4.35 Total: 0.09 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.70 Total: -60.79 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.06 Total: -10.74 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.14 -12.38 -44.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610351149.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.120 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds