Wall clock time and date at job start Wed Apr 1 2020 03:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.76854 * 2 1 4 4 C 1.52788 * 109.77210 * 120.74497 * 2 1 3 5 5 C 1.50602 * 110.85689 * 167.01131 * 4 2 1 6 6 C 1.38990 * 117.60965 * 160.32373 * 5 4 2 7 7 C 1.37904 * 120.58634 * 179.60373 * 6 5 4 8 8 C 1.38261 * 119.82491 * 359.93813 * 7 6 5 9 9 C 1.37959 * 119.71856 * 0.20712 * 8 7 6 10 10 C 1.37667 * 122.87496 * 340.23158 * 5 4 2 11 11 C 1.50808 * 122.35427 * 0.87283 * 10 5 4 12 12 N 1.46682 * 109.66907 * 348.83355 * 11 10 5 13 13 C 1.34771 * 121.34325 * 224.36185 * 12 11 10 14 14 O 1.21589 * 119.99822 * 184.84228 * 13 12 11 15 15 N 1.34775 * 120.00104 * 4.84335 * 13 12 11 16 16 C 1.46506 * 120.00098 * 184.82522 * 15 13 12 17 17 C 1.53042 * 109.45943 * 275.06788 * 16 15 13 18 18 C 1.53193 * 109.31235 * 178.61282 * 17 16 15 19 19 N 1.46927 * 108.77248 * 54.63366 * 18 17 16 20 20 C 1.36939 * 120.62751 * 126.37155 * 19 18 17 21 21 H 1.07998 * 119.99608 * 211.10444 * 20 19 18 22 22 C 1.38806 * 120.00196 * 31.10757 * 20 19 18 23 23 N 1.31626 * 120.00153 * 10.21469 * 22 20 19 24 24 Si 1.86804 * 120.00278 * 190.21417 * 22 20 19 25 25 H 1.48498 * 109.46663 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46853 * 119.99775 * 24 22 20 27 27 H 1.48490 * 109.47261 * 240.00166 * 24 22 20 28 28 C 1.46926 * 118.74116 * 306.38700 * 19 18 17 29 29 C 1.53040 * 109.46048 * 154.99888 * 16 15 13 30 30 H 1.08997 * 109.47557 * 301.41157 * 1 2 3 31 31 H 1.09006 * 109.47024 * 61.40706 * 1 2 3 32 32 H 1.09000 * 109.47572 * 181.40307 * 1 2 3 33 33 H 1.09001 * 109.20281 * 287.36446 * 4 2 1 34 34 H 1.09001 * 109.19969 * 46.65652 * 4 2 1 35 35 H 1.07996 * 119.70516 * 359.57793 * 6 5 4 36 36 H 1.07999 * 120.08580 * 179.97438 * 7 6 5 37 37 H 1.08005 * 120.14439 * 180.18173 * 8 7 6 38 38 H 1.07996 * 119.74719 * 180.02562 * 9 8 7 39 39 H 1.08995 * 109.43785 * 108.89669 * 11 10 5 40 40 H 1.09000 * 109.43605 * 228.77914 * 11 10 5 41 41 H 0.96999 * 119.99721 * 4.81826 * 15 13 12 42 42 H 1.09004 * 109.45869 * 35.02318 * 16 15 13 43 43 H 1.09001 * 109.49431 * 298.56846 * 17 16 15 44 44 H 1.09004 * 109.49752 * 58.66301 * 17 16 15 45 45 H 1.09000 * 109.58466 * 294.84716 * 18 17 16 46 46 H 1.08992 * 109.58327 * 174.42023 * 18 17 16 47 47 H 0.96993 * 120.00047 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.58911 * 293.82813 * 28 19 18 49 49 H 1.08996 * 109.58827 * 173.39594 * 28 19 18 50 50 H 1.09001 * 109.49511 * 301.33635 * 29 16 15 51 51 H 1.08999 * 109.49893 * 61.39985 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8986 1.0257 0.0000 4 6 2.0468 -0.7350 1.2357 5 6 3.5187 -1.0277 1.1090 6 6 4.2239 -1.3006 2.2752 7 6 5.5726 -1.5848 2.2294 8 6 6.2312 -1.6003 1.0138 9 6 5.5344 -1.3268 -0.1451 10 6 4.1776 -1.0360 -0.0997 11 6 3.4795 -0.7322 -1.4015 12 7 2.0282 -0.7097 -1.1900 13 6 1.1849 -1.3144 -2.0499 14 8 -0.0169 -1.2064 -1.9000 15 7 1.6737 -2.0388 -3.0760 16 6 0.7613 -2.6080 -4.0709 17 6 0.2297 -3.9512 -3.5657 18 6 -0.7504 -4.5269 -4.5928 19 7 -0.0806 -4.5956 -5.8987 20 6 -0.0397 -5.7705 -6.6009 21 1 0.8013 -5.9868 -7.2429 22 6 -1.0792 -6.6834 -6.4874 23 7 -2.1909 -6.3417 -5.8710 24 14 -0.9005 -8.3969 -7.2095 25 1 0.4351 -8.5294 -7.8449 26 1 -1.0362 -9.4061 -6.1286 27 1 -1.9579 -8.6175 -8.2284 28 6 0.5448 -3.3798 -6.4368 29 6 1.5104 -2.8171 -5.3890 30 1 -0.3634 0.5356 0.8770 31 1 -0.3633 0.4919 -0.9024 32 1 -0.3634 -1.0273 0.0252 33 1 1.8790 -0.1163 2.1173 34 1 1.5032 -1.6731 1.3483 35 1 3.7112 -1.2896 3.2256 36 1 6.1127 -1.7953 3.1406 37 1 7.2867 -1.8251 0.9717 38 1 6.0483 -1.3392 -1.0948 39 1 3.8074 0.2394 -1.7708 40 1 3.7273 -1.5005 -2.1339 41 1 2.6295 -2.1832 -3.1557 42 1 -0.0728 -1.9248 -4.2316 43 1 1.0608 -4.6429 -3.4284 44 1 -0.2836 -3.8051 -2.6152 45 1 -1.6256 -3.8811 -4.6645 46 1 -1.0558 -5.5271 -4.2857 47 1 -2.9174 -6.9795 -5.7921 48 1 -0.2248 -2.6405 -6.6588 49 1 1.0940 -3.6232 -7.3463 50 1 1.9088 -1.8637 -5.7362 51 1 2.3298 -3.5190 -5.2344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610351149.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:14 Heat of formation + Delta-G solvation = 16.035393 kcal Electronic energy + Delta-G solvation = -30686.590010 eV Core-core repulsion = 26778.894628 eV Total energy + Delta-G solvation = -3907.695382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92230 -40.36661 -39.16487 -37.22065 -36.15647 -34.70590 -33.54334 -32.50930 -31.91001 -31.54379 -30.64504 -27.71029 -27.03452 -26.46372 -24.18694 -23.88194 -23.13074 -22.91339 -21.98070 -21.15667 -20.27599 -18.83969 -18.34608 -17.90333 -17.08696 -17.04174 -16.72439 -16.04846 -15.83786 -15.70026 -15.63777 -15.32620 -15.13353 -15.03072 -14.73037 -14.54983 -14.44602 -14.05797 -13.97971 -13.76622 -13.36964 -13.19335 -13.14979 -12.95519 -12.93998 -12.69407 -12.67375 -12.55603 -12.23718 -12.08946 -11.99029 -11.97988 -11.83112 -11.73311 -11.52105 -11.32383 -10.59686 -10.38952 -10.03543 -9.73344 -9.51621 -9.42636 -8.65499 -7.85650 -5.37878 0.42390 0.47578 1.47055 1.48024 1.58194 1.59140 2.17750 2.51184 2.79763 2.92836 3.31336 3.61838 3.68493 3.68866 3.88594 3.90610 4.04377 4.12231 4.15180 4.22555 4.31313 4.36745 4.39462 4.49330 4.51572 4.62715 4.68688 4.70186 4.73534 4.79501 4.83160 4.85674 4.91817 5.03586 5.08308 5.09734 5.11697 5.14981 5.25188 5.33535 5.34104 5.48398 5.54521 5.62431 5.63996 5.65359 5.66673 5.72504 5.72943 5.98501 6.12949 6.41808 7.00737 7.15211 7.63205 7.84635 8.38478 9.20740 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015745 B = 0.002527 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.895320 B =11075.599723 C =11680.457083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.161 3.839 3 H 0.094 0.906 4 C -0.089 4.089 5 C -0.084 4.084 6 C -0.131 4.131 7 C -0.125 4.125 8 C -0.128 4.128 9 C -0.118 4.118 10 C -0.110 4.110 11 C 0.153 3.847 12 N -0.628 5.628 13 C 0.703 3.297 14 O -0.615 6.615 15 N -0.730 5.730 16 C 0.183 3.817 17 C -0.129 4.129 18 C 0.185 3.815 19 N -0.610 5.610 20 C -0.259 4.259 21 H 0.073 0.927 22 C -0.055 4.055 23 N -0.940 5.940 24 Si 0.972 3.028 25 H -0.261 1.261 26 H -0.293 1.293 27 H -0.293 1.293 28 C 0.142 3.858 29 C -0.121 4.121 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.404 0.596 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.041 0.959 45 H -0.012 1.012 46 H 0.055 0.945 47 H 0.249 0.751 48 H 0.013 0.987 49 H 0.069 0.931 50 H 0.092 0.908 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.686 15.221 15.804 29.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.058 3.942 3 H 0.112 0.888 4 C -0.127 4.127 5 C -0.084 4.084 6 C -0.149 4.149 7 C -0.143 4.143 8 C -0.146 4.146 9 C -0.136 4.136 10 C -0.111 4.111 11 C 0.030 3.970 12 N -0.365 5.365 13 C 0.405 3.595 14 O -0.496 6.496 15 N -0.386 5.386 16 C 0.078 3.922 17 C -0.169 4.169 18 C 0.059 3.941 19 N -0.334 5.334 20 C -0.390 4.390 21 H 0.091 0.909 22 C -0.250 4.250 23 N -0.587 5.587 24 Si 0.800 3.200 25 H -0.185 1.185 26 H -0.220 1.220 27 H -0.220 1.220 28 C 0.016 3.984 29 C -0.160 4.160 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.151 0.849 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.242 0.758 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.006 0.994 46 H 0.073 0.927 47 H 0.058 0.942 48 H 0.031 0.969 49 H 0.087 0.913 50 H 0.110 0.890 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 18.682 15.228 15.883 28.865 hybrid contribution -0.325 -1.269 -0.276 1.339 sum 18.357 13.960 15.607 27.847 Atomic orbital electron populations 1.21971 0.93241 1.02074 1.01033 1.21190 0.95028 0.95347 0.82641 0.88845 1.20913 0.91700 1.01189 0.98927 1.19657 0.95530 1.00069 0.93154 1.21406 0.95055 1.00376 0.98026 1.21402 0.94544 0.99318 0.99020 1.21400 1.01056 0.99760 0.92386 1.21303 0.92932 0.99344 1.00030 1.19911 0.94846 1.01990 0.94364 1.20581 0.78110 1.03456 0.94839 1.47316 1.06222 1.56895 1.26051 1.16066 0.84835 0.78617 0.79969 1.90973 1.15070 1.68012 1.75528 1.45423 1.10742 1.55413 1.27071 1.20482 0.91669 0.92788 0.87264 1.22310 0.99473 0.97023 0.98102 1.20454 0.90977 0.98484 0.84223 1.44324 1.64976 1.06453 1.17651 1.19605 1.01323 0.95252 1.22775 0.90898 1.26003 0.94608 1.03465 1.00936 1.70176 1.05218 1.35261 1.48015 0.85136 0.77869 0.79659 0.77373 1.18503 1.21982 1.21965 1.21045 0.94026 0.87721 0.95569 1.22141 0.98515 1.01809 0.93558 0.91509 0.93132 0.93656 0.87583 0.91831 0.84900 0.84190 0.83881 0.83815 0.88298 0.88482 0.75832 0.92540 0.92717 0.94044 0.99362 0.92667 0.94213 0.96937 0.91296 0.88978 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 7.59 71.98 0.55 -2.61 16 2 C 0.16 3.30 3.46 44.78 0.16 3.45 16 3 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 4 C -0.09 -1.59 5.21 29.75 0.16 -1.43 16 5 C -0.08 -1.48 5.76 -19.85 -0.11 -1.60 16 6 C -0.13 -1.99 9.59 22.37 0.21 -1.77 16 7 C -0.12 -1.65 10.04 22.20 0.22 -1.42 16 8 C -0.13 -1.61 10.05 22.21 0.22 -1.39 16 9 C -0.12 -1.59 9.62 22.35 0.22 -1.37 16 10 C -0.11 -1.83 5.82 -19.82 -0.12 -1.95 16 11 C 0.15 2.44 6.20 85.63 0.53 2.97 16 12 N -0.63 -14.38 2.93 -818.05 -2.40 -16.78 16 13 C 0.70 21.60 8.21 179.06 1.47 23.06 16 14 O -0.62 -23.98 11.57 -3.99 -0.05 -24.02 16 15 N -0.73 -20.46 4.98 -457.67 -2.28 -22.74 16 16 C 0.18 6.43 2.38 45.02 0.11 6.54 16 17 C -0.13 -5.42 5.65 30.67 0.17 -5.25 16 18 C 0.19 9.63 5.26 86.36 0.45 10.08 16 19 N -0.61 -31.20 2.99 -699.11 -2.09 -33.29 16 20 C -0.26 -14.31 9.59 84.03 0.81 -13.50 16 21 H 0.07 3.83 7.85 -2.91 -0.02 3.81 16 22 C -0.06 -3.14 5.06 84.86 0.43 -2.71 16 23 N -0.94 -57.55 11.00 21.65 0.24 -57.31 16 24 Si 0.97 45.38 29.57 68.60 2.03 47.41 16 25 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 C 0.14 5.77 6.52 86.36 0.56 6.33 16 29 C -0.12 -3.76 5.55 30.67 0.17 -3.59 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.51 6.87 -2.38 -0.02 1.49 16 32 H 0.04 1.42 6.71 -2.39 -0.02 1.41 16 33 H 0.11 1.37 8.11 -2.39 -0.02 1.35 16 34 H 0.06 1.37 8.07 -2.39 -0.02 1.35 16 35 H 0.13 1.58 8.05 -2.91 -0.02 1.55 16 36 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 38 H 0.14 1.26 8.05 -2.91 -0.02 1.24 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.10 1.33 5.75 -2.39 -0.01 1.32 16 41 H 0.40 8.61 6.19 -92.71 -0.57 8.04 16 42 H 0.06 2.29 7.65 -2.39 -0.02 2.27 16 43 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.04 1.83 8.09 -2.38 -0.02 1.81 16 45 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 46 H 0.05 3.24 6.06 -2.39 -0.01 3.23 16 47 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 48 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.07 2.62 7.93 -2.39 -0.02 2.60 16 50 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 51 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -73.35 390.87 2.00 -71.35 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.35 Total: 21.56 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 6.20 Total: 13.83 kcal Atomic # 7 Polarization: -123.60 SS G_CDS: -6.53 Total: -130.13 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.05 Total: -24.02 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -73.35 2.00 -71.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610351149.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.385 kcal (2) G-P(sol) polarization free energy of solvation -73.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds