Wall clock time and date at job start Wed Apr 1 2020 02:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47241 * 2 1 4 4 C 1.53003 * 109.47060 * 120.00576 * 2 1 3 5 5 S 1.81396 * 109.46643 * 174.99715 * 4 2 1 6 6 C 1.81402 * 102.99666 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47448 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47464 * 179.97438 * 7 6 5 9 9 N 1.46505 * 109.47308 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00225 * 179.97438 * 9 8 7 11 11 O 1.21587 * 119.99684 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00300 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00360 * 180.02562 * 12 10 9 14 14 C 1.53071 * 109.44009 * 84.79625 * 13 12 10 15 15 C 1.53201 * 109.29371 * 181.23934 * 14 13 12 16 16 N 1.46928 * 108.89275 * 305.57634 * 15 14 13 17 17 C 1.36934 * 120.63265 * 233.51651 * 16 15 14 18 18 H 1.07997 * 119.99862 * 151.82898 * 17 16 15 19 19 C 1.38806 * 120.00015 * 331.83027 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.08772 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.08448 * 19 17 16 22 22 H 1.48503 * 109.47142 * 60.00161 * 21 19 17 23 23 H 1.48498 * 109.47084 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47267 * 300.00095 * 21 19 17 25 25 C 1.46932 * 118.73342 * 53.53882 * 16 15 14 26 26 C 1.53045 * 109.46092 * 205.00269 * 13 12 10 27 27 H 1.09001 * 109.46980 * 299.99739 * 1 2 3 28 28 H 1.09005 * 109.46970 * 59.99628 * 1 2 3 29 29 H 1.09000 * 109.47415 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46499 * 240.00475 * 2 1 3 31 31 H 1.08997 * 109.46877 * 300.00293 * 3 2 1 32 32 H 1.09001 * 109.46921 * 60.00224 * 3 2 1 33 33 H 1.08993 * 109.46966 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47266 * 54.99512 * 4 2 1 35 35 H 1.09003 * 109.46640 * 294.99527 * 4 2 1 36 36 H 1.09004 * 109.47347 * 60.00120 * 6 5 4 37 37 H 1.09004 * 109.47637 * 300.00094 * 6 5 4 38 38 H 1.09006 * 109.47101 * 60.00002 * 7 6 5 39 39 H 1.09006 * 109.47420 * 300.00559 * 7 6 5 40 40 H 1.09000 * 109.46942 * 60.00657 * 8 7 6 41 41 H 1.08997 * 109.47369 * 300.00049 * 8 7 6 42 42 H 0.97005 * 119.99867 * 0.02562 * 9 8 7 43 43 H 0.97005 * 119.99791 * 0.02562 * 12 10 9 44 44 H 1.08998 * 109.45866 * 324.97703 * 13 12 10 45 45 H 1.09002 * 109.39343 * 61.36176 * 14 13 12 46 46 H 1.09003 * 109.62467 * 301.25403 * 14 13 12 47 47 H 1.09000 * 109.58250 * 185.72113 * 15 14 13 48 48 H 1.08995 * 109.58477 * 65.43833 * 15 14 13 49 49 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 50 50 H 1.08996 * 109.59017 * 66.18099 * 25 16 15 51 51 H 1.09009 * 109.58200 * 186.46074 * 25 16 15 52 52 H 1.09002 * 109.49555 * 58.67538 * 26 13 12 53 53 H 1.08992 * 109.52043 * 298.59539 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 16 3.8479 -0.8516 1.1764 6 6 4.2568 -1.7192 2.7161 7 6 5.7720 -1.9108 2.8067 8 6 6.1169 -2.6420 4.1056 9 7 7.5678 -2.8259 4.1920 10 6 8.1056 -3.4499 5.2587 11 8 7.3866 -3.8606 6.1490 12 7 9.4404 -3.6187 5.3385 13 6 10.0249 -4.2974 6.4977 14 6 9.9898 -5.8111 6.2729 15 6 10.5734 -6.5188 7.4999 16 7 11.9122 -5.9770 7.7696 17 6 12.9922 -6.8110 7.8846 18 1 13.9794 -6.4541 7.6307 19 6 12.8182 -8.1149 8.3273 20 7 11.7076 -8.4574 8.9453 21 14 14.1599 -9.3838 8.0461 22 1 15.4086 -8.9409 8.7170 23 1 13.7318 -10.6898 8.6085 24 1 14.4058 -9.5296 6.5889 25 6 12.0701 -4.5234 7.9140 26 6 11.4731 -3.8376 6.6810 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6054 -1.7199 1.2951 35 1 1.7517 -0.1584 2.1369 36 1 3.7667 -2.6928 2.7257 37 1 3.9130 -1.1311 3.5670 38 1 6.2625 -0.9373 2.7969 39 1 6.1154 -2.4992 1.9558 40 1 5.6265 -3.6154 4.1158 41 1 5.7736 -2.0532 4.9562 42 1 8.1414 -2.4979 3.4819 43 1 10.0140 -3.2906 4.6283 44 1 9.4501 -4.0515 7.3905 45 1 10.5828 -6.0603 5.3929 46 1 8.9600 -6.1350 6.1217 47 1 10.6447 -7.5889 7.3050 48 1 9.9290 -6.3465 8.3619 49 1 11.5861 -9.3685 9.2551 50 1 11.5471 -4.1861 8.8088 51 1 13.1289 -4.2771 7.9949 52 1 11.4969 -2.7566 6.8186 53 1 12.0546 -4.1049 5.7987 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611121070.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:29 Heat of formation + Delta-G solvation = -59.684799 kcal Electronic energy + Delta-G solvation = -26908.935195 eV Core-core repulsion = 23133.400291 eV Total energy + Delta-G solvation = -3775.534904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18745 -39.15201 -37.10614 -36.91814 -35.90465 -34.17058 -33.36161 -31.69709 -31.07577 -28.55400 -28.04022 -27.49234 -26.44565 -23.91080 -23.72769 -22.80710 -21.82318 -21.14332 -21.01495 -19.28393 -18.64064 -17.70563 -17.17668 -16.99196 -16.76594 -16.21955 -15.98684 -15.84500 -15.60779 -15.34683 -15.27673 -15.12411 -14.79283 -14.73022 -14.46538 -14.04279 -14.00720 -13.71873 -13.40221 -13.18590 -13.12092 -12.98789 -12.91823 -12.64534 -12.55247 -12.42909 -12.12816 -12.07983 -12.04711 -11.97455 -11.85225 -11.73783 -11.68793 -11.52600 -11.43334 -11.18578 -10.85040 -10.56736 -10.30896 -9.72547 -8.70249 -8.62559 -7.86342 -5.33007 0.65182 1.48321 1.51117 1.57872 1.63436 1.75466 2.18516 2.52716 3.25995 3.33306 3.68367 3.75459 3.86911 3.87365 3.89425 3.93998 4.02557 4.11281 4.15878 4.36119 4.39732 4.48936 4.49158 4.56284 4.62290 4.67658 4.68838 4.70829 4.80455 4.81664 4.87958 4.99296 5.02197 5.03403 5.04537 5.09931 5.11704 5.14972 5.22236 5.33365 5.38741 5.40861 5.46203 5.50167 5.62198 5.64985 5.70592 6.05987 6.39499 7.14055 7.15930 7.63192 7.85405 8.38401 9.20614 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.034409 B = 0.001363 C = 0.001344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.550227 B =20538.365512 C =20822.698505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.149 4.149 4 C -0.075 4.075 5 S -0.288 6.288 6 C -0.079 4.079 7 C -0.099 4.099 8 C 0.146 3.854 9 N -0.732 5.732 10 C 0.697 3.303 11 O -0.640 6.640 12 N -0.725 5.725 13 C 0.181 3.819 14 C -0.130 4.130 15 C 0.183 3.817 16 N -0.609 5.609 17 C -0.265 4.265 18 H 0.074 0.926 19 C -0.053 4.053 20 N -0.939 5.939 21 Si 0.970 3.030 22 H -0.272 1.272 23 H -0.298 1.298 24 H -0.276 1.276 25 C 0.141 3.859 26 C -0.120 4.120 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.413 0.587 43 H 0.411 0.589 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.043 0.957 47 H 0.054 0.946 48 H -0.012 1.012 49 H 0.249 0.751 50 H 0.011 0.989 51 H 0.068 0.932 52 H 0.091 0.909 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.194 20.910 -20.817 34.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 C -0.206 4.206 4 C -0.224 4.224 5 S -0.060 6.060 6 C -0.228 4.228 7 C -0.138 4.138 8 C 0.020 3.980 9 N -0.390 5.390 10 C 0.397 3.603 11 O -0.521 6.521 12 N -0.380 5.380 13 C 0.075 3.925 14 C -0.171 4.171 15 C 0.056 3.944 16 N -0.332 5.332 17 C -0.395 4.395 18 H 0.092 0.908 19 C -0.248 4.248 20 N -0.585 5.585 21 Si 0.797 3.203 22 H -0.198 1.198 23 H -0.224 1.224 24 H -0.202 1.202 25 C 0.015 3.985 26 C -0.160 4.160 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.250 0.750 43 H 0.248 0.752 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.006 0.994 49 H 0.058 0.942 50 H 0.029 0.971 51 H 0.087 0.913 52 H 0.110 0.890 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.191 20.774 -20.732 34.530 hybrid contribution 0.039 -1.374 0.807 1.594 sum -18.152 19.401 -19.925 33.210 Atomic orbital electron populations 1.21832 0.93180 1.02397 1.02682 1.20894 0.96632 0.96394 0.95966 1.21889 1.01252 0.95220 1.02250 1.23564 0.91872 1.04280 1.02638 1.86961 1.10115 1.77300 1.31663 1.23219 0.99442 1.03005 0.97150 1.21348 0.93703 1.02027 0.96707 1.21111 0.79040 1.00013 0.97858 1.44900 1.08653 1.62773 1.22633 1.16193 0.82616 0.78822 0.82676 1.90912 1.61380 1.57833 1.42000 1.45095 1.05011 1.62603 1.25284 1.20503 0.94120 0.90599 0.87278 1.22327 0.99026 0.96193 0.99520 1.20454 0.84568 0.97334 0.92001 1.44334 1.04572 1.01782 1.82557 1.19558 0.89080 0.93741 1.37093 0.90800 1.25873 0.99582 1.01215 0.98121 1.70207 1.28869 1.18275 1.41125 0.85311 0.78973 0.77957 0.78026 1.19787 1.22391 1.20239 1.21052 0.99252 0.83481 0.94711 1.22126 0.93226 1.00607 0.99994 0.92110 0.91535 0.92192 0.90988 0.91922 0.92328 0.92682 0.89610 0.89570 0.89429 0.89175 0.89491 0.89788 0.92718 0.92289 0.75047 0.75227 0.92775 0.92106 0.93859 0.92765 0.99394 0.94194 0.97097 0.91305 0.89016 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.19 71.98 0.66 -0.26 16 2 C -0.08 -0.71 2.92 -10.79 -0.03 -0.74 16 3 C -0.15 -1.39 9.02 71.98 0.65 -0.74 16 4 C -0.08 -0.75 5.38 71.98 0.39 -0.36 16 5 S -0.29 -3.84 20.55 -56.49 -1.16 -5.00 16 6 C -0.08 -0.90 5.94 71.98 0.43 -0.48 16 7 C -0.10 -1.13 5.34 30.59 0.16 -0.96 16 8 C 0.15 2.54 5.67 86.38 0.49 3.03 16 9 N -0.73 -14.11 5.56 -478.54 -2.66 -16.77 16 10 C 0.70 20.51 8.53 179.06 1.53 22.04 16 11 O -0.64 -25.80 16.01 -3.99 -0.06 -25.86 16 12 N -0.73 -19.14 5.08 -457.64 -2.33 -21.47 16 13 C 0.18 6.24 2.41 45.03 0.11 6.35 16 14 C -0.13 -5.36 5.66 30.69 0.17 -5.19 16 15 C 0.18 9.42 5.30 86.37 0.46 9.88 16 16 N -0.61 -30.96 3.00 -699.07 -2.09 -33.05 16 17 C -0.26 -14.57 9.58 84.03 0.81 -13.77 16 18 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 19 C -0.05 -2.98 4.92 84.86 0.42 -2.57 16 20 N -0.94 -57.24 11.20 21.65 0.24 -57.00 16 21 Si 0.97 45.10 29.59 68.60 2.03 47.13 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 C 0.14 5.70 6.52 86.36 0.56 6.26 16 26 C -0.12 -3.69 5.55 30.67 0.17 -3.52 16 27 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.07 0.37 8.14 -2.38 -0.02 0.36 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.65 7.13 -2.39 -0.02 0.63 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.41 4.99 8.49 -92.70 -0.79 4.21 16 43 H 0.41 7.56 8.62 -92.70 -0.80 6.76 16 44 H 0.05 2.20 7.58 -2.39 -0.02 2.19 16 45 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.05 3.14 6.06 -2.39 -0.01 3.12 16 48 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 49 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 50 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 51 H 0.07 2.62 7.93 -2.38 -0.02 2.60 16 52 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 53 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -73.86 429.07 0.22 -73.64 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -0.72 Total: 19.41 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 6.97 Total: 18.97 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -6.84 Total: -128.29 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.06 Total: -25.86 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -1.16 Total: -5.00 kcal Total: -73.86 0.22 -73.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611121070.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.952 kcal (2) G-P(sol) polarization free energy of solvation -73.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds