Wall clock time and date at job start Wed Apr 1 2020 03:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 113.21201 * 2 1 4 4 C 1.49990 * 113.96813 * 132.39744 * 2 1 3 5 5 O 1.21279 * 133.24097 * 293.98373 * 4 2 1 6 6 N 1.33837 * 93.51417 * 113.72461 * 4 2 1 7 7 C 1.46503 * 133.17615 * 180.22026 * 6 4 2 8 8 N 1.46903 * 109.46866 * 90.00668 * 7 6 4 9 9 C 1.46962 * 110.99520 * 278.79703 * 8 7 6 10 10 C 1.53054 * 109.35927 * 176.81389 * 9 8 7 11 11 N 1.46953 * 109.36527 * 58.40122 * 10 9 8 12 12 C 1.46903 * 110.99680 * 176.80892 * 11 10 9 13 13 C 1.50700 * 109.47179 * 58.98249 * 12 11 10 14 14 H 1.07998 * 119.99878 * 5.00617 * 13 12 11 15 15 C 1.37878 * 120.00100 * 185.00983 * 13 12 11 16 16 N 1.31514 * 120.00060 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00148 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46713 * 90.00047 * 17 15 13 19 19 H 1.48492 * 109.46861 * 209.99828 * 17 15 13 20 20 H 1.48499 * 109.46836 * 329.99698 * 17 15 13 21 21 C 1.46952 * 110.88197 * 300.67616 * 11 10 9 22 22 C 1.46953 * 110.99890 * 154.99884 * 8 7 6 23 23 C 1.45727 * 93.64672 * 0.26061 * 6 4 2 24 24 H 1.08998 * 113.47217 * 114.77629 * 23 6 4 25 25 C 1.50699 * 113.46623 * 245.16507 * 23 6 4 26 26 C 1.38236 * 120.00429 * 20.22198 * 25 23 6 27 27 C 1.38231 * 119.99637 * 179.78422 * 26 25 23 28 28 C 1.38228 * 120.00713 * 0.44374 * 27 26 25 29 29 C 1.38241 * 119.99508 * 359.81102 * 28 27 26 30 30 C 1.38227 * 120.00249 * 359.97438 * 29 28 27 31 31 H 1.09006 * 109.47128 * 307.10280 * 1 2 3 32 32 H 1.08996 * 109.47371 * 67.10389 * 1 2 3 33 33 H 1.09001 * 109.46946 * 187.10585 * 1 2 3 34 34 H 1.09001 * 109.47152 * 210.00180 * 7 6 4 35 35 H 1.08993 * 109.47094 * 330.00364 * 7 6 4 36 36 H 1.08997 * 109.49013 * 296.78011 * 9 8 7 37 37 H 1.08994 * 109.48693 * 56.84776 * 9 8 7 38 38 H 1.08995 * 109.48874 * 298.42972 * 10 9 8 39 39 H 1.09001 * 109.50543 * 178.38290 * 10 9 8 40 40 H 1.09001 * 109.46903 * 178.98168 * 12 11 10 41 41 H 1.09004 * 109.47525 * 298.97757 * 12 11 10 42 42 H 0.96999 * 120.00092 * 180.02562 * 16 15 13 43 43 H 1.08997 * 109.48944 * 299.35447 * 21 11 10 44 44 H 1.08996 * 109.50590 * 179.30240 * 21 11 10 45 45 H 1.08998 * 109.49257 * 303.15378 * 22 8 7 46 46 H 1.09000 * 109.48777 * 63.20042 * 22 8 7 47 47 H 1.07998 * 119.99545 * 0.02562 * 26 25 23 48 48 H 1.08008 * 119.99965 * 180.27450 * 27 26 25 49 49 H 1.07997 * 120.00796 * 179.83008 * 28 27 26 50 50 H 1.08004 * 119.99736 * 180.02562 * 29 28 27 51 51 H 1.07997 * 120.00215 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9595 1.0018 0.0000 4 6 2.1392 -0.9241 1.0121 5 8 2.1486 -0.9383 2.2248 6 7 2.6637 -1.7306 0.0817 7 6 3.4622 -2.9568 0.1527 8 7 2.5683 -4.1224 0.1770 9 6 2.0462 -4.3573 1.5306 10 6 1.0603 -5.5276 1.4980 11 7 1.7413 -6.7242 0.9842 12 6 0.8474 -7.8898 1.0087 13 6 -0.3721 -7.6053 0.1703 14 1 -0.4364 -6.6876 -0.3954 15 6 -1.4058 -8.5167 0.1254 16 7 -1.3273 -9.6344 0.8139 17 14 -2.9177 -8.1638 -0.9133 18 1 -2.7142 -8.7017 -2.2823 19 1 -4.1034 -8.8122 -0.2979 20 1 -3.1374 -6.6969 -0.9853 21 6 2.2634 -6.4893 -0.3692 22 6 3.2493 -5.3190 -0.3367 23 6 2.1486 -0.9389 -1.0281 24 1 2.9301 -0.4756 -1.6304 25 6 1.1260 -1.6676 -1.8613 26 6 0.4571 -2.7579 -1.3371 27 6 -0.4841 -3.4234 -2.0999 28 6 -0.7500 -3.0044 -3.3901 29 6 -0.0774 -1.9173 -3.9161 30 6 0.8607 -1.2490 -3.1519 31 1 -0.3634 0.6200 0.8197 32 1 -0.3634 0.3998 -0.9466 33 1 -0.3633 -1.0198 0.1271 34 1 4.1139 -3.0170 -0.7190 35 1 4.0676 -2.9442 1.0589 36 1 2.8710 -4.5952 2.2023 37 1 1.5358 -3.4615 1.8839 38 1 0.2219 -5.2788 0.8475 39 1 0.6933 -5.7224 2.5057 40 1 1.3706 -8.7573 0.6065 41 1 0.5431 -8.0929 2.0355 42 1 -2.0543 -10.2757 0.7821 43 1 1.4386 -6.2514 -1.0409 44 1 2.7737 -7.3851 -0.7230 45 1 3.6159 -5.1243 -1.3446 46 1 4.0879 -5.5676 0.3136 47 1 0.6673 -3.0873 -0.3303 48 1 -1.0099 -4.2726 -1.6889 49 1 -1.4834 -3.5261 -3.9870 50 1 -0.2854 -1.5896 -4.9240 51 1 1.3859 -0.3994 -3.5627 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872734067.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:41 Heat of formation + Delta-G solvation = 49.845379 kcal Electronic energy + Delta-G solvation = -32087.040967 eV Core-core repulsion = 28180.811697 eV Total energy + Delta-G solvation = -3906.229271 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.79211 -38.71999 -38.63012 -36.64222 -35.23763 -32.66830 -31.84442 -30.90962 -30.66977 -30.34961 -28.62914 -26.56954 -25.26706 -24.36002 -23.08442 -22.73987 -22.22914 -21.45205 -21.19189 -19.16495 -18.27394 -17.10829 -16.99744 -16.92226 -16.39023 -15.81449 -15.54267 -14.80397 -14.69314 -14.62236 -14.56638 -14.20993 -14.01605 -13.81710 -13.30676 -13.25723 -13.10306 -13.05696 -12.95081 -12.52030 -12.34836 -12.00830 -11.91768 -11.88674 -11.66506 -11.50661 -11.10148 -10.93889 -10.90075 -10.80576 -10.70769 -10.55987 -10.43771 -10.09471 -9.88605 -9.85587 -9.58794 -9.10325 -8.73751 -8.63306 -8.44156 -8.13531 -7.18168 -6.03411 -4.12186 1.37910 1.58438 2.40465 2.87914 3.25522 3.32965 3.34471 3.75065 3.88839 4.13061 4.39173 4.43253 4.48634 4.82360 4.89500 5.02133 5.04019 5.09447 5.14110 5.18987 5.27199 5.28834 5.40412 5.50490 5.56989 5.59247 5.64816 5.70626 5.73447 5.81388 5.86406 5.95194 6.05555 6.09702 6.11856 6.18436 6.28136 6.38030 6.55449 6.58447 6.59980 6.72442 6.77252 6.81145 6.85193 7.15191 7.16086 7.19608 7.33987 7.51624 7.89175 8.03661 8.15278 8.27194 8.28835 8.98003 9.54417 11.01791 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010715 B = 0.004396 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.412550 B = 6367.291239 C = 7726.438969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.142 4.142 3 H 0.120 0.880 4 C 0.527 3.473 5 O -0.511 6.511 6 N -0.607 5.607 7 C 0.291 3.709 8 N -0.548 5.548 9 C 0.058 3.942 10 C 0.068 3.932 11 N -0.542 5.542 12 C 0.187 3.813 13 C -0.545 4.545 14 H 0.058 0.942 15 C 0.065 3.935 16 N -0.891 5.891 17 Si 0.886 3.114 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.066 3.934 22 C 0.066 3.934 23 C 0.177 3.823 24 H 0.102 0.898 25 C -0.102 4.102 26 C -0.070 4.070 27 C -0.117 4.117 28 C -0.115 4.115 29 C -0.131 4.131 30 C -0.111 4.111 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.037 0.963 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.026 0.974 41 H 0.034 0.966 42 H 0.262 0.738 43 H 0.048 0.952 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.037 0.963 47 H 0.142 0.858 48 H 0.122 0.878 49 H 0.116 0.884 50 H 0.116 0.884 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.488 19.647 -7.892 22.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.163 4.163 3 H 0.138 0.862 4 C 0.313 3.687 5 O -0.385 6.385 6 N -0.343 5.343 7 C 0.081 3.919 8 N -0.275 5.275 9 C -0.070 4.070 10 C -0.061 4.061 11 N -0.267 5.267 12 C 0.062 3.938 13 C -0.584 4.584 14 H 0.076 0.924 15 C -0.137 4.137 16 N -0.530 5.530 17 Si 0.714 3.286 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.063 4.063 22 C -0.062 4.062 23 C 0.073 3.927 24 H 0.120 0.880 25 C -0.103 4.103 26 C -0.088 4.088 27 C -0.135 4.135 28 C -0.133 4.133 29 C -0.150 4.150 30 C -0.129 4.129 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.056 0.944 47 H 0.160 0.840 48 H 0.140 0.860 49 H 0.134 0.866 50 H 0.134 0.866 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.559 19.260 -7.132 21.885 hybrid contribution -0.949 -0.210 -0.800 1.258 sum 6.610 19.050 -7.932 21.668 Atomic orbital electron populations 1.21530 0.90919 1.03457 1.02698 1.22981 0.99234 1.00222 0.93909 0.86202 1.21518 0.77382 0.82755 0.87086 1.90736 1.60240 1.75260 1.12216 1.50187 1.52618 1.24060 1.07417 1.21759 0.88414 0.80222 1.01537 1.61968 1.37013 1.04218 1.24335 1.22298 0.98241 0.98680 0.87742 1.21889 0.94777 0.89136 1.00271 1.62685 1.38099 1.05168 1.20713 1.19729 0.89363 0.87293 0.97446 1.21724 1.03141 1.04775 1.28803 0.92360 1.24950 0.98278 0.95035 0.95446 1.69940 1.32888 1.09138 1.41030 0.86691 0.82885 0.78485 0.80567 1.20680 1.21200 1.19864 1.21900 0.96878 0.95383 0.92175 1.22158 0.95998 0.89398 0.98642 1.20836 0.93790 0.88686 0.89346 0.87986 1.19613 0.98598 0.97703 0.94433 1.21395 0.93035 0.92946 1.01412 1.21302 0.98077 0.99798 0.94337 1.21206 0.99505 0.96749 0.95822 1.20977 0.97665 0.96749 0.99569 1.20785 0.98779 0.99929 0.93418 0.91606 0.91027 0.91465 0.89187 0.92169 0.94515 0.91333 0.93392 0.91422 0.95545 0.94821 0.92847 0.93426 0.91408 0.91244 0.94447 0.84026 0.85951 0.86575 0.86567 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.52 37.15 0.32 -0.91 16 2 C -0.14 -1.31 4.62 -92.46 -0.43 -1.74 16 3 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.53 6.89 8.28 -16.90 -0.14 6.75 16 5 O -0.51 -8.70 17.68 5.56 0.10 -8.60 16 6 N -0.61 -7.02 2.31 -187.39 -0.43 -7.45 16 7 C 0.29 3.45 6.58 -63.31 -0.42 3.04 16 8 N -0.55 -7.84 2.52 -238.37 -0.60 -8.45 16 9 C 0.06 0.96 4.91 -3.76 -0.02 0.94 16 10 C 0.07 1.35 5.24 -3.77 -0.02 1.33 16 11 N -0.54 -11.40 4.92 -235.91 -1.16 -12.56 16 12 C 0.19 4.76 5.14 -4.97 -0.03 4.73 16 13 C -0.55 -14.61 7.66 -34.44 -0.26 -14.87 16 14 H 0.06 1.55 5.82 -52.49 -0.31 1.24 16 15 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 16 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 17 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.07 1.22 5.32 -3.77 -0.02 1.20 16 22 C 0.07 0.96 5.53 -3.77 -0.02 0.94 16 23 C 0.18 1.65 4.61 -74.97 -0.35 1.30 16 24 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 25 C -0.10 -1.12 4.03 -104.62 -0.42 -1.54 16 26 C -0.07 -0.96 7.05 -39.58 -0.28 -1.24 16 27 C -0.12 -1.71 10.05 -39.59 -0.40 -2.11 16 28 C -0.11 -1.44 10.05 -39.58 -0.40 -1.84 16 29 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 30 C -0.11 -1.08 9.74 -39.58 -0.39 -1.46 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.59 8.03 -51.93 -0.42 0.17 16 33 H 0.07 0.79 6.27 -51.93 -0.33 0.47 16 34 H 0.09 0.89 7.75 -51.93 -0.40 0.49 16 35 H 0.06 0.74 7.90 -51.93 -0.41 0.33 16 36 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 37 H 0.07 1.18 7.15 -51.93 -0.37 0.81 16 38 H 0.05 1.04 6.62 -51.93 -0.34 0.69 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.03 0.72 8.12 -51.93 -0.42 0.29 16 41 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.05 0.99 6.78 -51.93 -0.35 0.64 16 44 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 45 H 0.07 0.88 7.98 -51.93 -0.41 0.47 16 46 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.14 2.23 5.09 -52.49 -0.27 1.96 16 48 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 49 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 50 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 51 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -30.67 397.53 -12.38 -43.06 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -8.24 Total: 2.73 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -3.76 Total: -5.56 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -1.46 Total: -53.76 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.10 Total: -8.60 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.67 -12.38 -43.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872734067.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.901 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds