Wall clock time and date at job start Wed Apr 1 2020 03:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 113.21201 * 2 1 4 4 C 1.49990 * 113.96813 * 132.39744 * 2 1 3 5 5 O 1.21279 * 133.24097 * 293.98373 * 4 2 1 6 6 N 1.33837 * 93.51417 * 113.72461 * 4 2 1 7 7 C 1.46503 * 133.17615 * 180.22026 * 6 4 2 8 8 N 1.46903 * 109.46866 * 90.00668 * 7 6 4 9 9 C 1.46962 * 110.99520 * 278.79703 * 8 7 6 10 10 C 1.53054 * 109.35927 * 176.81389 * 9 8 7 11 11 N 1.46953 * 109.36527 * 58.40122 * 10 9 8 12 12 C 1.46903 * 110.99680 * 176.80892 * 11 10 9 13 13 C 1.50700 * 109.47179 * 58.98249 * 12 11 10 14 14 H 1.07998 * 119.99878 * 5.00617 * 13 12 11 15 15 C 1.37878 * 120.00100 * 185.00983 * 13 12 11 16 16 N 1.31514 * 120.00060 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00148 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46713 * 90.00047 * 17 15 13 19 19 H 1.48492 * 109.46861 * 209.99828 * 17 15 13 20 20 H 1.48499 * 109.46836 * 329.99698 * 17 15 13 21 21 C 1.46952 * 110.88197 * 300.67616 * 11 10 9 22 22 C 1.46953 * 110.99890 * 154.99884 * 8 7 6 23 23 C 1.45727 * 93.64672 * 0.26061 * 6 4 2 24 24 H 1.08998 * 113.47217 * 114.77629 * 23 6 4 25 25 C 1.50699 * 113.46623 * 245.16507 * 23 6 4 26 26 C 1.38236 * 120.00429 * 20.22198 * 25 23 6 27 27 C 1.38231 * 119.99637 * 179.78422 * 26 25 23 28 28 C 1.38228 * 120.00713 * 0.44374 * 27 26 25 29 29 C 1.38241 * 119.99508 * 359.81102 * 28 27 26 30 30 C 1.38227 * 120.00249 * 359.97438 * 29 28 27 31 31 H 1.09006 * 109.47128 * 307.10280 * 1 2 3 32 32 H 1.08996 * 109.47371 * 67.10389 * 1 2 3 33 33 H 1.09001 * 109.46946 * 187.10585 * 1 2 3 34 34 H 1.09001 * 109.47152 * 210.00180 * 7 6 4 35 35 H 1.08993 * 109.47094 * 330.00364 * 7 6 4 36 36 H 1.08997 * 109.49013 * 296.78011 * 9 8 7 37 37 H 1.08994 * 109.48693 * 56.84776 * 9 8 7 38 38 H 1.08995 * 109.48874 * 298.42972 * 10 9 8 39 39 H 1.09001 * 109.50543 * 178.38290 * 10 9 8 40 40 H 1.09001 * 109.46903 * 178.98168 * 12 11 10 41 41 H 1.09004 * 109.47525 * 298.97757 * 12 11 10 42 42 H 0.96999 * 120.00092 * 180.02562 * 16 15 13 43 43 H 1.08997 * 109.48944 * 299.35447 * 21 11 10 44 44 H 1.08996 * 109.50590 * 179.30240 * 21 11 10 45 45 H 1.08998 * 109.49257 * 303.15378 * 22 8 7 46 46 H 1.09000 * 109.48777 * 63.20042 * 22 8 7 47 47 H 1.07998 * 119.99545 * 0.02562 * 26 25 23 48 48 H 1.08008 * 119.99965 * 180.27450 * 27 26 25 49 49 H 1.07997 * 120.00796 * 179.83008 * 28 27 26 50 50 H 1.08004 * 119.99736 * 180.02562 * 29 28 27 51 51 H 1.07997 * 120.00215 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9595 1.0018 0.0000 4 6 2.1392 -0.9241 1.0121 5 8 2.1486 -0.9383 2.2248 6 7 2.6637 -1.7306 0.0817 7 6 3.4622 -2.9568 0.1527 8 7 2.5683 -4.1224 0.1770 9 6 2.0462 -4.3573 1.5306 10 6 1.0603 -5.5276 1.4980 11 7 1.7413 -6.7242 0.9842 12 6 0.8474 -7.8898 1.0087 13 6 -0.3721 -7.6053 0.1703 14 1 -0.4364 -6.6876 -0.3954 15 6 -1.4058 -8.5167 0.1254 16 7 -1.3273 -9.6344 0.8139 17 14 -2.9177 -8.1638 -0.9133 18 1 -2.7142 -8.7017 -2.2823 19 1 -4.1034 -8.8122 -0.2979 20 1 -3.1374 -6.6969 -0.9853 21 6 2.2634 -6.4893 -0.3692 22 6 3.2493 -5.3190 -0.3367 23 6 2.1486 -0.9389 -1.0281 24 1 2.9301 -0.4756 -1.6304 25 6 1.1260 -1.6676 -1.8613 26 6 0.4571 -2.7579 -1.3371 27 6 -0.4841 -3.4234 -2.0999 28 6 -0.7500 -3.0044 -3.3901 29 6 -0.0774 -1.9173 -3.9161 30 6 0.8607 -1.2490 -3.1519 31 1 -0.3634 0.6200 0.8197 32 1 -0.3634 0.3998 -0.9466 33 1 -0.3633 -1.0198 0.1271 34 1 4.1139 -3.0170 -0.7190 35 1 4.0676 -2.9442 1.0589 36 1 2.8710 -4.5952 2.2023 37 1 1.5358 -3.4615 1.8839 38 1 0.2219 -5.2788 0.8475 39 1 0.6933 -5.7224 2.5057 40 1 1.3706 -8.7573 0.6065 41 1 0.5431 -8.0929 2.0355 42 1 -2.0543 -10.2757 0.7821 43 1 1.4386 -6.2514 -1.0409 44 1 2.7737 -7.3851 -0.7230 45 1 3.6159 -5.1243 -1.3446 46 1 4.0879 -5.5676 0.3136 47 1 0.6673 -3.0873 -0.3303 48 1 -1.0099 -4.2726 -1.6889 49 1 -1.4834 -3.5261 -3.9870 50 1 -0.2854 -1.5896 -4.9240 51 1 1.3859 -0.3994 -3.5627 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872734067.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:40 Heat of formation + Delta-G solvation = 32.004952 kcal Electronic energy + Delta-G solvation = -32087.814586 eV Core-core repulsion = 28180.811697 eV Total energy + Delta-G solvation = -3907.002890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.67275 -40.12693 -39.62105 -37.70692 -36.77664 -34.56533 -32.99655 -31.89269 -31.79581 -31.51839 -30.07807 -28.07007 -26.50345 -25.67266 -24.50615 -23.89978 -23.38152 -22.89188 -22.10883 -20.76380 -19.17477 -18.54127 -18.00079 -17.90776 -17.87699 -17.07748 -16.73282 -16.39078 -16.02809 -15.83716 -15.68462 -15.49718 -15.48933 -14.92365 -14.82523 -14.59680 -14.20267 -14.03240 -13.97413 -13.78869 -13.53085 -13.37850 -13.23936 -13.11434 -12.93452 -12.79131 -12.56163 -12.42054 -12.32333 -12.19408 -12.16247 -11.84555 -11.80809 -11.76945 -11.70504 -11.47438 -10.83990 -10.64261 -10.11188 -9.65727 -9.56957 -9.29239 -9.04681 -8.19034 -6.37556 0.48198 0.67449 1.31011 1.32037 1.42171 1.42294 2.01273 2.32922 2.86806 2.96010 3.04584 3.06088 3.31789 3.66390 3.70806 3.93208 3.95571 4.09572 4.17456 4.23949 4.28023 4.30297 4.39475 4.39644 4.43566 4.45591 4.51349 4.63940 4.67846 4.75481 4.79777 4.87527 4.90212 4.99848 5.00704 5.05228 5.16594 5.19614 5.20243 5.29050 5.30799 5.32619 5.45476 5.63252 5.68647 5.70115 5.81127 5.86201 5.95773 6.00868 6.07560 6.23216 6.25332 6.47099 6.82134 7.19564 7.33352 8.83834 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010715 B = 0.004396 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.412550 B = 6367.291239 C = 7726.438969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.124 4.124 3 H 0.159 0.841 4 C 0.511 3.489 5 O -0.563 6.563 6 N -0.608 5.608 7 C 0.289 3.711 8 N -0.551 5.551 9 C 0.080 3.920 10 C 0.075 3.925 11 N -0.539 5.539 12 C 0.201 3.799 13 C -0.548 4.548 14 H 0.054 0.946 15 C 0.014 3.986 16 N -0.926 5.926 17 Si 0.951 3.049 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.270 1.270 21 C 0.067 3.933 22 C 0.078 3.922 23 C 0.183 3.817 24 H 0.149 0.851 25 C -0.098 4.098 26 C -0.082 4.082 27 C -0.149 4.149 28 C -0.126 4.126 29 C -0.127 4.127 30 C -0.094 4.094 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.034 0.966 34 H 0.124 0.876 35 H 0.057 0.943 36 H 0.037 0.963 37 H 0.060 0.940 38 H 0.022 0.978 39 H 0.050 0.950 40 H 0.006 0.994 41 H 0.002 0.998 42 H 0.265 0.735 43 H 0.022 0.978 44 H 0.067 0.933 45 H 0.101 0.899 46 H 0.047 0.953 47 H 0.114 0.886 48 H 0.082 0.918 49 H 0.118 0.882 50 H 0.146 0.854 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.162 23.400 -11.173 27.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.145 4.145 3 H 0.176 0.824 4 C 0.298 3.702 5 O -0.440 6.440 6 N -0.341 5.341 7 C 0.079 3.921 8 N -0.279 5.279 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.263 5.263 12 C 0.074 3.926 13 C -0.587 4.587 14 H 0.073 0.927 15 C -0.185 4.185 16 N -0.566 5.566 17 Si 0.776 3.224 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.195 1.195 21 C -0.062 4.062 22 C -0.049 4.049 23 C 0.080 3.920 24 H 0.166 0.834 25 C -0.099 4.099 26 C -0.100 4.100 27 C -0.167 4.167 28 C -0.145 4.145 29 C -0.145 4.145 30 C -0.112 4.112 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.054 0.946 34 H 0.141 0.859 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.020 0.980 42 H 0.074 0.926 43 H 0.040 0.960 44 H 0.085 0.915 45 H 0.120 0.880 46 H 0.065 0.935 47 H 0.132 0.868 48 H 0.100 0.900 49 H 0.136 0.864 50 H 0.164 0.836 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.248 23.030 -10.454 26.929 hybrid contribution -1.476 -1.373 0.220 2.028 sum 7.772 21.656 -10.234 25.182 Atomic orbital electron populations 1.21523 0.91443 1.01660 1.03906 1.23045 0.98621 1.01427 0.91456 0.82369 1.22372 0.77071 0.83832 0.86899 1.90700 1.61983 1.76730 1.14599 1.50351 1.51949 1.23631 1.08219 1.21897 0.88119 0.79109 1.02957 1.61935 1.38268 1.05199 1.22458 1.21923 0.97121 0.96337 0.89417 1.21784 0.95099 0.89949 0.98517 1.62618 1.36700 1.04351 1.22650 1.19385 0.89628 0.88496 0.95094 1.21891 1.03753 1.04483 1.28586 0.92749 1.25754 1.01317 0.94802 0.96640 1.70059 1.33995 1.10086 1.42469 0.85656 0.79150 0.78405 0.79159 1.19625 1.20639 1.19514 1.21943 0.96940 0.97491 0.89810 1.22049 0.94517 0.87664 1.00714 1.21148 0.94262 0.87701 0.88862 0.83396 1.19758 0.98297 0.96542 0.95293 1.21165 0.93952 0.94636 1.00246 1.21107 0.99654 0.99936 0.96016 1.21311 1.00270 0.97988 0.94884 1.21330 0.96860 0.95401 1.00882 1.21217 0.97649 1.00196 0.92186 0.91373 0.88976 0.94635 0.85853 0.92498 0.94524 0.92191 0.95960 0.93123 0.97579 0.97951 0.92628 0.96002 0.91466 0.88039 0.93451 0.86778 0.90004 0.86396 0.83611 0.82155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.52 71.98 0.61 -1.56 16 2 C -0.12 -1.85 4.62 -11.97 -0.06 -1.90 16 3 H 0.16 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.51 12.62 8.28 84.25 0.70 13.32 16 5 O -0.56 -19.34 17.68 -3.03 -0.05 -19.40 16 6 N -0.61 -12.48 2.31 -865.70 -2.00 -14.47 16 7 C 0.29 6.13 6.58 170.80 1.12 7.25 16 8 N -0.55 -15.47 2.52 -908.06 -2.29 -17.76 16 9 C 0.08 2.76 4.91 86.31 0.42 3.18 16 10 C 0.08 3.21 5.24 86.31 0.45 3.66 16 11 N -0.54 -24.00 4.92 -900.29 -4.43 -28.43 16 12 C 0.20 10.90 5.14 85.56 0.44 11.34 16 13 C -0.55 -31.08 7.66 25.60 0.20 -30.89 16 14 H 0.05 3.09 5.82 -2.91 -0.02 3.07 16 15 C 0.01 0.82 5.46 84.65 0.46 1.28 16 16 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 17 Si 0.95 45.05 29.54 68.60 2.03 47.08 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 21 C 0.07 2.56 5.32 86.31 0.46 3.02 16 22 C 0.08 2.18 5.53 86.31 0.48 2.66 16 23 C 0.18 2.54 4.61 40.84 0.19 2.73 16 24 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 25 C -0.10 -1.81 4.03 -19.86 -0.08 -1.89 16 26 C -0.08 -2.25 7.05 22.27 0.16 -2.09 16 27 C -0.15 -4.58 10.05 22.27 0.22 -4.35 16 28 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 29 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 30 C -0.09 -1.34 9.74 22.27 0.22 -1.12 16 31 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.09 1.19 8.03 -2.39 -0.02 1.17 16 33 H 0.03 0.84 6.27 -2.39 -0.01 0.82 16 34 H 0.12 1.85 7.75 -2.39 -0.02 1.83 16 35 H 0.06 1.28 7.90 -2.39 -0.02 1.27 16 36 H 0.04 1.26 8.12 -2.39 -0.02 1.24 16 37 H 0.06 2.18 7.15 -2.39 -0.02 2.16 16 38 H 0.02 1.05 6.62 -2.39 -0.02 1.04 16 39 H 0.05 2.26 8.14 -2.39 -0.02 2.25 16 40 H 0.01 0.35 8.12 -2.39 -0.02 0.33 16 41 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 43 H 0.02 0.95 6.78 -2.39 -0.02 0.93 16 44 H 0.07 2.55 8.12 -2.39 -0.02 2.53 16 45 H 0.10 2.25 7.98 -2.39 -0.02 2.23 16 46 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.11 3.76 5.09 -2.91 -0.01 3.75 16 48 H 0.08 3.06 8.06 -2.91 -0.02 3.03 16 49 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 50 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 51 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -73.96 397.53 0.90 -73.06 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.91 Total: 16.05 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 6.44 Total: -0.20 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -8.43 Total: -116.59 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.05 Total: -19.40 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -73.96 0.90 -73.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872734067.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.069 kcal (2) G-P(sol) polarization free energy of solvation -73.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds