Wall clock time and date at job start Wed Apr 1 2020 03:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.87807 * 2 1 4 4 C 1.54316 * 109.88874 * 238.96272 * 2 1 3 5 5 H 1.08998 * 110.70575 * 336.53574 * 4 2 1 6 6 N 1.46504 * 110.70563 * 99.77066 * 4 2 1 7 7 C 1.34773 * 119.99709 * 205.00117 * 6 4 2 8 8 O 1.21584 * 120.00275 * 354.41343 * 7 6 4 9 9 N 1.34779 * 119.99659 * 174.41951 * 7 6 4 10 10 C 1.47240 * 121.33816 * 184.53179 * 9 7 6 11 11 C 1.52797 * 107.84888 * 115.99269 * 10 9 7 12 12 C 1.50575 * 110.87353 * 47.41362 * 11 10 9 13 13 C 1.41408 * 117.64218 * 159.77219 * 12 11 10 14 14 C 1.41403 * 119.96514 * 359.12802 * 13 12 11 15 15 H 1.08002 * 120.00083 * 34.59824 * 14 13 12 16 16 C 1.39939 * 120.00145 * 214.59205 * 14 13 12 17 17 N 1.30823 * 119.99943 * 356.73662 * 16 14 13 18 18 Si 1.86798 * 120.00165 * 176.72735 * 16 14 13 19 19 H 1.48500 * 109.46906 * 60.00410 * 18 16 14 20 20 H 1.48507 * 109.47302 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47382 * 300.00604 * 18 16 14 22 22 C 1.40402 * 120.07273 * 179.14683 * 13 12 11 23 23 C 1.37641 * 119.53719 * 0.22714 * 22 13 12 24 24 C 1.38337 * 119.99056 * 0.17717 * 23 22 13 25 25 C 1.37048 * 122.99655 * 339.67317 * 12 11 10 26 26 C 1.46665 * 121.34399 * 4.24925 * 9 7 6 27 27 C 1.55553 * 102.82734 * 218.18311 * 4 2 1 28 28 C 1.54906 * 101.66928 * 35.68712 * 27 4 2 29 29 N 1.47443 * 109.88718 * 121.02664 * 2 1 3 30 30 C 1.46900 * 110.99824 * 356.31192 * 29 2 1 31 31 H 1.08996 * 109.47151 * 300.71104 * 1 2 3 32 32 H 1.09004 * 109.46292 * 60.70382 * 1 2 3 33 33 H 1.09000 * 109.47037 * 180.70279 * 1 2 3 34 34 H 0.96997 * 120.00063 * 24.99215 * 6 4 2 35 35 H 1.09004 * 109.78474 * 235.57573 * 10 9 7 36 36 H 1.08998 * 109.78609 * 356.34775 * 10 9 7 37 37 H 1.09000 * 109.20166 * 167.77502 * 11 10 9 38 38 H 1.09006 * 109.19725 * 287.10541 * 11 10 9 39 39 H 0.97005 * 119.99945 * 179.97438 * 17 16 14 40 40 H 1.07996 * 120.23397 * 180.24315 * 22 13 12 41 41 H 1.08005 * 120.00649 * 180.19541 * 23 22 13 42 42 H 1.08000 * 119.47639 * 179.97438 * 24 23 22 43 43 H 1.09005 * 109.42576 * 344.42498 * 26 9 7 44 44 H 1.08996 * 109.42552 * 104.25935 * 26 9 7 45 45 H 1.08996 * 111.01331 * 277.57276 * 27 4 2 46 46 H 1.09003 * 110.98357 * 153.78501 * 27 4 2 47 47 H 1.09000 * 110.37254 * 204.06681 * 28 27 4 48 48 H 1.08998 * 110.47005 * 81.76847 * 28 27 4 49 49 H 1.09003 * 109.47847 * 60.00018 * 30 29 2 50 50 H 1.09004 * 109.47149 * 179.97438 * 30 29 2 51 51 H 1.09001 * 109.47230 * 299.99808 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9007 1.0250 0.0000 4 6 2.0551 -0.7482 -1.2434 5 1 1.3067 -1.4469 -1.6172 6 7 2.4500 0.1986 -2.2893 7 6 2.4514 -0.1861 -3.5809 8 8 2.2239 -1.3449 -3.8703 9 7 2.7051 0.7136 -4.5518 10 6 2.6175 0.3491 -5.9756 11 6 1.4921 1.1716 -6.6013 12 6 1.6074 2.6217 -6.2126 13 6 0.9440 3.5727 -7.0221 14 6 0.2210 3.1490 -8.1610 15 1 -0.3023 2.2044 -8.1479 16 6 0.1834 3.9538 -9.3052 17 7 0.7634 5.1265 -9.2995 18 14 -0.6946 3.3537 -10.8409 19 1 -2.1254 3.1072 -10.5286 20 1 -0.5902 4.3839 -11.9054 21 1 -0.0660 2.0927 -11.3097 22 6 1.0027 4.9371 -6.6963 23 6 1.7132 5.3403 -5.5885 24 6 2.3660 4.4038 -4.8072 25 6 2.3179 3.0475 -5.1207 26 6 3.0735 2.0969 -4.2326 27 6 3.2936 -1.5099 -0.6907 28 6 2.8221 -1.8800 0.7377 29 7 2.0316 -0.7147 1.1881 30 6 0.9237 -1.1342 2.0567 31 1 -0.3633 0.5248 0.8835 32 1 -0.3632 0.5029 -0.8963 33 1 -0.3633 -1.0276 0.0126 34 1 2.7103 1.1024 -2.0521 35 1 3.5606 0.5756 -6.4732 36 1 2.3960 -0.7139 -6.0714 37 1 1.5462 1.0860 -7.6866 38 1 0.5323 0.7847 -6.2588 39 1 0.7377 5.6842 -10.0928 40 1 0.4937 5.6652 -7.3104 41 1 1.7607 6.3877 -5.3291 42 1 2.9214 4.7294 -3.9401 43 1 2.8313 2.3053 -3.1904 44 1 4.1436 2.2324 -4.3893 45 1 4.1687 -0.8609 -0.6572 46 1 3.4961 -2.4048 -1.2792 47 1 3.6799 -2.0327 1.3928 48 1 2.1997 -2.7744 0.7139 49 1 0.2598 -1.7986 1.5037 50 1 1.3216 -1.6592 2.9252 51 1 0.3675 -0.2564 2.3858 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925345425.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:59 Heat of formation + Delta-G solvation = 6.688408 kcal Electronic energy + Delta-G solvation = -30582.597227 eV Core-core repulsion = 26674.496530 eV Total energy + Delta-G solvation = -3908.100697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.50548 -39.42657 -38.07501 -35.49729 -34.54292 -33.62994 -32.19477 -31.78495 -30.49628 -29.97485 -28.64667 -25.95136 -25.58521 -25.16633 -24.60507 -22.87344 -21.50024 -20.66671 -20.48234 -20.04832 -18.69323 -17.45602 -17.15928 -16.74944 -15.83823 -15.64632 -15.45936 -15.22460 -14.85153 -14.45071 -14.15005 -14.01414 -13.99990 -13.67034 -13.39598 -13.23404 -12.82835 -12.63792 -12.57196 -12.40189 -12.23018 -12.02564 -11.86601 -11.59910 -11.49388 -11.45620 -11.42714 -11.30672 -11.19228 -11.00689 -10.88823 -10.87018 -10.46932 -10.20113 -9.95638 -9.72629 -9.41129 -9.14620 -9.02921 -8.58918 -8.15998 -7.32256 -7.23571 -6.65961 -4.44752 2.73664 2.80642 2.82011 3.06122 3.08490 3.16682 3.41210 3.68239 3.93568 4.09242 4.33610 4.52554 4.61534 4.70147 4.97245 5.00844 5.06121 5.16944 5.26872 5.30602 5.36452 5.42743 5.48574 5.56292 5.58682 5.64755 5.75551 5.82376 5.87156 5.88293 5.90060 5.91701 5.96444 6.01104 6.28497 6.31094 6.44300 6.58090 6.65725 6.67943 6.74484 6.82834 6.86937 7.06722 7.15373 7.26687 7.34274 7.57241 7.77334 7.97321 8.02229 8.14867 8.26202 8.60024 8.80255 8.87392 8.91813 10.24693 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.002566 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.051457 B =10908.111362 C =11311.853872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.061 3.939 3 H 0.091 0.909 4 C 0.151 3.849 5 H 0.095 0.905 6 N -0.739 5.739 7 C 0.713 3.287 8 O -0.599 6.599 9 N -0.620 5.620 10 C 0.131 3.869 11 C -0.071 4.071 12 C -0.158 4.158 13 C 0.105 3.895 14 C -0.461 4.461 15 H 0.076 0.924 16 C 0.072 3.928 17 N -0.810 5.810 18 Si 0.912 3.088 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.151 4.151 23 C -0.110 4.110 24 C -0.225 4.225 25 C -0.088 4.088 26 C 0.164 3.836 27 C -0.142 4.142 28 C 0.041 3.959 29 N -0.526 5.526 30 C 0.015 3.985 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.397 0.603 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.278 0.722 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.048 0.952 49 H 0.034 0.966 50 H 0.065 0.935 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 -8.042 15.466 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.047 4.047 3 H 0.109 0.891 4 C 0.043 3.957 5 H 0.113 0.887 6 N -0.396 5.396 7 C 0.415 3.585 8 O -0.478 6.478 9 N -0.356 5.356 10 C 0.008 3.992 11 C -0.109 4.109 12 C -0.160 4.160 13 C 0.102 3.898 14 C -0.492 4.492 15 H 0.094 0.906 16 C -0.144 4.144 17 N -0.437 5.437 18 Si 0.737 3.263 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.171 4.171 23 C -0.129 4.129 24 C -0.244 4.244 25 C -0.089 4.089 26 C 0.041 3.959 27 C -0.181 4.181 28 C -0.087 4.087 29 N -0.250 5.250 30 C -0.134 4.134 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.234 0.766 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.145 0.855 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.100 0.900 48 H 0.067 0.933 49 H 0.052 0.948 50 H 0.084 0.916 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.851 -8.363 15.378 17.735 hybrid contribution -0.706 0.014 -1.099 1.306 sum 2.146 -8.349 14.279 16.679 Atomic orbital electron populations 1.22357 0.95083 1.02346 1.02979 1.22650 0.94516 0.99092 0.88484 0.89139 1.22094 0.96357 0.90816 0.86404 0.88658 1.45153 1.73887 1.15831 1.04730 1.15708 0.77798 0.84529 0.80473 1.90864 1.57849 1.16996 1.82086 1.47243 1.72152 1.09957 1.06226 1.21597 0.99302 1.00123 0.78143 1.20476 0.96963 0.92646 1.00802 1.19363 1.03570 0.94273 0.98770 1.17647 0.90025 0.91147 0.90931 1.19481 1.28216 1.04670 0.96809 0.90586 1.25854 0.93813 0.94067 1.00643 1.69750 1.35223 1.08744 1.29987 0.86298 0.80404 0.79303 0.80274 1.19071 1.20449 1.19021 1.21522 1.02154 0.97161 0.96234 1.20659 0.98962 0.96929 0.96339 1.20226 1.09191 0.92250 1.02762 1.18989 1.00211 0.93194 0.96460 1.20228 0.98101 0.79830 0.97762 1.23203 0.98616 1.01294 0.95002 1.23041 0.97849 0.92030 0.95752 1.63775 1.21918 1.23255 1.16038 1.22624 0.93416 1.00487 0.96844 0.91529 0.91506 0.92166 0.76612 0.91604 0.89508 0.89956 0.92658 0.91088 0.85501 0.89265 0.89448 0.91199 0.91609 0.90310 0.90175 0.89973 0.93317 0.94781 0.91636 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 7.84 37.16 0.29 -1.28 16 2 C 0.06 0.61 3.76 -66.72 -0.25 0.36 16 3 H 0.09 0.90 7.72 -51.93 -0.40 0.50 16 4 C 0.15 1.76 2.81 -65.88 -0.19 1.58 16 5 H 0.10 1.30 7.35 -51.93 -0.38 0.92 16 6 N -0.74 -9.74 5.09 -56.68 -0.29 -10.03 16 7 C 0.71 12.06 8.32 -86.92 -0.72 11.34 16 8 O -0.60 -11.89 15.54 5.29 0.08 -11.81 16 9 N -0.62 -10.56 2.94 -180.34 -0.53 -11.09 16 10 C 0.13 2.31 6.45 -3.74 -0.02 2.29 16 11 C -0.07 -1.43 5.01 -28.05 -0.14 -1.57 16 12 C -0.16 -3.58 5.82 -103.91 -0.60 -4.18 16 13 C 0.10 2.65 5.56 -106.67 -0.59 2.05 16 14 C -0.46 -11.68 7.79 -37.74 -0.29 -11.97 16 15 H 0.08 1.86 7.18 -52.49 -0.38 1.49 16 16 C 0.07 1.75 5.41 -17.34 -0.09 1.66 16 17 N -0.81 -20.49 10.61 55.55 0.59 -19.90 16 18 Si 0.91 18.56 29.56 -169.99 -5.02 13.53 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 22 C -0.15 -3.78 8.64 -38.99 -0.34 -4.12 16 23 C -0.11 -2.46 10.03 -39.76 -0.40 -2.85 16 24 C -0.22 -4.59 9.62 -39.16 -0.38 -4.97 16 25 C -0.09 -1.79 5.81 -104.79 -0.61 -2.39 16 26 C 0.16 2.65 6.12 -5.23 -0.03 2.61 16 27 C -0.14 -1.48 6.78 -24.37 -0.17 -1.64 16 28 C 0.04 0.36 6.73 -2.30 -0.02 0.35 16 29 N -0.53 -4.91 5.44 -231.56 -1.26 -6.17 16 30 C 0.01 0.11 8.29 60.06 0.50 0.61 16 31 H 0.07 0.54 6.69 -51.93 -0.35 0.19 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.54 6.62 -51.93 -0.34 0.20 16 34 H 0.40 4.58 5.97 -40.82 -0.24 4.34 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.09 1.52 7.07 -51.93 -0.37 1.16 16 37 H 0.08 1.68 7.15 -51.93 -0.37 1.31 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 40 H 0.13 3.33 6.16 -52.49 -0.32 3.01 16 41 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 42 H 0.09 1.54 8.05 -52.49 -0.42 1.11 16 43 H 0.07 0.96 5.82 -51.93 -0.30 0.66 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.05 0.41 7.78 -51.93 -0.40 0.01 16 49 H 0.03 0.26 6.44 -51.93 -0.33 -0.08 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.07 0.52 6.74 -51.93 -0.35 0.17 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -28.46 389.52 -12.52 -40.98 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -7.91 Total: 10.76 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -4.05 Total: -12.14 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -1.49 Total: -47.19 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.46 -12.52 -40.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925345425.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.671 kcal (2) G-P(sol) polarization free energy of solvation -28.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds