Wall clock time and date at job start Wed Apr 1 2020 03:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.87807 * 2 1 4 4 C 1.54316 * 109.88874 * 238.96272 * 2 1 3 5 5 H 1.08998 * 110.70575 * 336.53574 * 4 2 1 6 6 N 1.46504 * 110.70563 * 99.77066 * 4 2 1 7 7 C 1.34773 * 119.99709 * 205.00117 * 6 4 2 8 8 O 1.21584 * 120.00275 * 354.41343 * 7 6 4 9 9 N 1.34779 * 119.99659 * 174.41951 * 7 6 4 10 10 C 1.47240 * 121.33816 * 184.53179 * 9 7 6 11 11 C 1.52797 * 107.84888 * 115.99269 * 10 9 7 12 12 C 1.50575 * 110.87353 * 47.41362 * 11 10 9 13 13 C 1.41408 * 117.64218 * 159.77219 * 12 11 10 14 14 C 1.41403 * 119.96514 * 359.12802 * 13 12 11 15 15 H 1.08002 * 120.00083 * 34.59824 * 14 13 12 16 16 C 1.39939 * 120.00145 * 214.59205 * 14 13 12 17 17 N 1.30823 * 119.99943 * 356.73662 * 16 14 13 18 18 Si 1.86798 * 120.00165 * 176.72735 * 16 14 13 19 19 H 1.48500 * 109.46906 * 60.00410 * 18 16 14 20 20 H 1.48507 * 109.47302 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47382 * 300.00604 * 18 16 14 22 22 C 1.40402 * 120.07273 * 179.14683 * 13 12 11 23 23 C 1.37641 * 119.53719 * 0.22714 * 22 13 12 24 24 C 1.38337 * 119.99056 * 0.17717 * 23 22 13 25 25 C 1.37048 * 122.99655 * 339.67317 * 12 11 10 26 26 C 1.46665 * 121.34399 * 4.24925 * 9 7 6 27 27 C 1.55553 * 102.82734 * 218.18311 * 4 2 1 28 28 C 1.54906 * 101.66928 * 35.68712 * 27 4 2 29 29 N 1.47443 * 109.88718 * 121.02664 * 2 1 3 30 30 C 1.46900 * 110.99824 * 356.31192 * 29 2 1 31 31 H 1.08996 * 109.47151 * 300.71104 * 1 2 3 32 32 H 1.09004 * 109.46292 * 60.70382 * 1 2 3 33 33 H 1.09000 * 109.47037 * 180.70279 * 1 2 3 34 34 H 0.96997 * 120.00063 * 24.99215 * 6 4 2 35 35 H 1.09004 * 109.78474 * 235.57573 * 10 9 7 36 36 H 1.08998 * 109.78609 * 356.34775 * 10 9 7 37 37 H 1.09000 * 109.20166 * 167.77502 * 11 10 9 38 38 H 1.09006 * 109.19725 * 287.10541 * 11 10 9 39 39 H 0.97005 * 119.99945 * 179.97438 * 17 16 14 40 40 H 1.07996 * 120.23397 * 180.24315 * 22 13 12 41 41 H 1.08005 * 120.00649 * 180.19541 * 23 22 13 42 42 H 1.08000 * 119.47639 * 179.97438 * 24 23 22 43 43 H 1.09005 * 109.42576 * 344.42498 * 26 9 7 44 44 H 1.08996 * 109.42552 * 104.25935 * 26 9 7 45 45 H 1.08996 * 111.01331 * 277.57276 * 27 4 2 46 46 H 1.09003 * 110.98357 * 153.78501 * 27 4 2 47 47 H 1.09000 * 110.37254 * 204.06681 * 28 27 4 48 48 H 1.08998 * 110.47005 * 81.76847 * 28 27 4 49 49 H 1.09003 * 109.47847 * 60.00018 * 30 29 2 50 50 H 1.09004 * 109.47149 * 179.97438 * 30 29 2 51 51 H 1.09001 * 109.47230 * 299.99808 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9007 1.0250 0.0000 4 6 2.0551 -0.7482 -1.2434 5 1 1.3067 -1.4469 -1.6172 6 7 2.4500 0.1986 -2.2893 7 6 2.4514 -0.1861 -3.5809 8 8 2.2239 -1.3449 -3.8703 9 7 2.7051 0.7136 -4.5518 10 6 2.6175 0.3491 -5.9756 11 6 1.4921 1.1716 -6.6013 12 6 1.6074 2.6217 -6.2126 13 6 0.9440 3.5727 -7.0221 14 6 0.2210 3.1490 -8.1610 15 1 -0.3023 2.2044 -8.1479 16 6 0.1834 3.9538 -9.3052 17 7 0.7634 5.1265 -9.2995 18 14 -0.6946 3.3537 -10.8409 19 1 -2.1254 3.1072 -10.5286 20 1 -0.5902 4.3839 -11.9054 21 1 -0.0660 2.0927 -11.3097 22 6 1.0027 4.9371 -6.6963 23 6 1.7132 5.3403 -5.5885 24 6 2.3660 4.4038 -4.8072 25 6 2.3179 3.0475 -5.1207 26 6 3.0735 2.0969 -4.2326 27 6 3.2936 -1.5099 -0.6907 28 6 2.8221 -1.8800 0.7377 29 7 2.0316 -0.7147 1.1881 30 6 0.9237 -1.1342 2.0567 31 1 -0.3633 0.5248 0.8835 32 1 -0.3632 0.5029 -0.8963 33 1 -0.3633 -1.0276 0.0126 34 1 2.7103 1.1024 -2.0521 35 1 3.5606 0.5756 -6.4732 36 1 2.3960 -0.7139 -6.0714 37 1 1.5462 1.0860 -7.6866 38 1 0.5323 0.7847 -6.2588 39 1 0.7377 5.6842 -10.0928 40 1 0.4937 5.6652 -7.3104 41 1 1.7607 6.3877 -5.3291 42 1 2.9214 4.7294 -3.9401 43 1 2.8313 2.3053 -3.1904 44 1 4.1436 2.2324 -4.3893 45 1 4.1687 -0.8609 -0.6572 46 1 3.4961 -2.4048 -1.2792 47 1 3.6799 -2.0327 1.3928 48 1 2.1997 -2.7744 0.7139 49 1 0.2598 -1.7986 1.5037 50 1 1.3216 -1.6592 2.9252 51 1 0.3675 -0.2564 2.3858 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925345425.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:58 Heat of formation + Delta-G solvation = -9.504455 kcal Electronic energy + Delta-G solvation = -30583.299402 eV Core-core repulsion = 26674.496530 eV Total energy + Delta-G solvation = -3908.802873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.69452 -40.51020 -39.57299 -37.01427 -35.69862 -35.37404 -33.58974 -32.68007 -31.87289 -31.26403 -30.19619 -27.09249 -26.68788 -26.58976 -25.79752 -24.32414 -22.51566 -22.34238 -21.74869 -21.07513 -19.98750 -18.89692 -18.75533 -17.88726 -17.21131 -16.82464 -16.66860 -16.48395 -16.07578 -15.72641 -15.47238 -15.36226 -15.12199 -14.88669 -14.77804 -14.58035 -14.24332 -13.96095 -13.65013 -13.54972 -13.33993 -13.15986 -13.04212 -12.99200 -12.87973 -12.69943 -12.64514 -12.56569 -12.34936 -12.18691 -12.13013 -12.08337 -11.87358 -11.71834 -11.53345 -11.27862 -11.13854 -10.93227 -10.20153 -9.52477 -9.29223 -9.07311 -8.99819 -8.47447 -6.34894 1.00360 1.07463 1.37864 1.47442 1.51951 1.57834 2.10576 2.22722 2.78534 2.82977 3.06374 3.52044 3.64644 3.71787 3.88364 3.96659 4.12070 4.21863 4.24653 4.29910 4.31920 4.40400 4.47607 4.54405 4.55462 4.59945 4.62946 4.67122 4.68642 4.76160 4.90843 4.93182 4.95317 5.00681 5.05025 5.10288 5.13926 5.15753 5.22341 5.24396 5.37886 5.40149 5.55180 5.61081 5.79373 5.92368 5.95380 6.05680 6.08893 6.18723 6.22714 6.42726 6.76590 6.93711 7.01686 7.09407 7.51218 8.44150 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.002566 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.051457 B =10908.111362 C =11311.853872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.068 3.932 3 H 0.096 0.904 4 C 0.146 3.854 5 H 0.073 0.927 6 N -0.724 5.724 7 C 0.711 3.289 8 O -0.632 6.632 9 N -0.623 5.623 10 C 0.139 3.861 11 C -0.063 4.063 12 C -0.173 4.173 13 C 0.071 3.929 14 C -0.491 4.491 15 H 0.070 0.930 16 C 0.030 3.970 17 N -0.842 5.842 18 Si 0.977 3.023 19 H -0.264 1.264 20 H -0.271 1.271 21 H -0.262 1.262 22 C -0.182 4.182 23 C -0.118 4.118 24 C -0.214 4.214 25 C -0.088 4.088 26 C 0.167 3.833 27 C -0.137 4.137 28 C 0.045 3.955 29 N -0.530 5.530 30 C 0.012 3.988 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.408 0.592 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.281 0.719 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.095 0.905 48 H 0.052 0.948 49 H 0.033 0.967 50 H 0.076 0.924 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 -8.396 17.929 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.041 4.041 3 H 0.113 0.887 4 C 0.040 3.960 5 H 0.091 0.909 6 N -0.381 5.381 7 C 0.412 3.588 8 O -0.514 6.514 9 N -0.358 5.358 10 C 0.016 3.984 11 C -0.101 4.101 12 C -0.175 4.175 13 C 0.069 3.931 14 C -0.522 4.522 15 H 0.088 0.912 16 C -0.182 4.182 17 N -0.470 5.470 18 Si 0.799 3.201 19 H -0.188 1.188 20 H -0.196 1.196 21 H -0.186 1.186 22 C -0.202 4.202 23 C -0.136 4.136 24 C -0.233 4.233 25 C -0.089 4.089 26 C 0.045 3.955 27 C -0.176 4.176 28 C -0.082 4.082 29 N -0.255 5.255 30 C -0.136 4.136 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.247 0.753 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.147 0.853 43 H 0.120 0.880 44 H 0.108 0.892 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.114 0.886 48 H 0.070 0.930 49 H 0.052 0.948 50 H 0.095 0.905 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.098 -8.698 17.891 20.311 hybrid contribution -1.054 0.130 -1.701 2.005 sum 3.044 -8.568 16.190 18.569 Atomic orbital electron populations 1.22332 0.94795 1.02387 1.02904 1.22591 0.94667 0.99081 0.87753 0.88662 1.22188 0.96631 0.90687 0.86538 0.90920 1.45045 1.72852 1.16555 1.03657 1.15842 0.77541 0.84013 0.81363 1.90844 1.59262 1.18485 1.82762 1.47226 1.72283 1.10426 1.05880 1.21444 0.98684 0.99466 0.78838 1.20360 0.97413 0.91976 1.00319 1.19691 1.03665 0.94824 0.99301 1.18007 0.91199 0.92030 0.91899 1.19650 1.29579 1.04980 0.97954 0.91169 1.26627 0.94304 0.94053 1.03206 1.69845 1.36594 1.09733 1.30828 0.85312 0.79138 0.78894 0.76724 1.18831 1.19583 1.18621 1.21456 1.04094 0.96895 0.97719 1.20950 0.98453 0.98633 0.95609 1.20676 1.07716 0.91848 1.03051 1.19458 0.99124 0.94411 0.95937 1.20356 0.98634 0.78149 0.98373 1.23134 0.98071 1.00635 0.95782 1.23045 0.98324 0.92012 0.94841 1.63838 1.22513 1.23497 1.15610 1.22693 0.93076 1.00933 0.96869 0.90068 0.92989 0.92188 0.75338 0.90342 0.89589 0.91098 0.94035 0.90812 0.87899 0.87224 0.85347 0.88000 0.89210 0.89907 0.91366 0.88639 0.92997 0.94807 0.90524 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 7.84 71.98 0.56 -2.23 16 2 C 0.07 1.19 3.76 45.26 0.17 1.36 16 3 H 0.10 1.60 7.72 -2.39 -0.02 1.58 16 4 C 0.15 3.20 2.81 46.32 0.13 3.33 16 5 H 0.07 1.95 7.35 -2.39 -0.02 1.93 16 6 N -0.72 -17.48 5.09 -451.49 -2.30 -19.78 16 7 C 0.71 22.95 8.32 179.05 1.49 24.44 16 8 O -0.63 -24.80 15.54 -3.98 -0.06 -24.86 16 9 N -0.62 -19.99 2.94 -842.72 -2.48 -22.47 16 10 C 0.14 4.81 6.45 86.17 0.56 5.36 16 11 C -0.06 -2.58 5.01 29.74 0.15 -2.43 16 12 C -0.17 -7.89 5.82 -19.40 -0.11 -8.00 16 13 C 0.07 3.69 5.56 -21.19 -0.12 3.58 16 14 C -0.49 -26.05 7.79 23.46 0.18 -25.87 16 15 H 0.07 3.64 7.18 -2.91 -0.02 3.62 16 16 C 0.03 1.52 5.41 85.26 0.46 1.98 16 17 N -0.84 -44.39 10.61 21.82 0.23 -44.16 16 18 Si 0.98 39.19 29.56 68.60 2.03 41.22 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 20 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 21 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 22 C -0.18 -9.40 8.64 22.66 0.20 -9.20 16 23 C -0.12 -5.17 10.03 22.15 0.22 -4.95 16 24 C -0.21 -8.13 9.62 22.55 0.22 -7.92 16 25 C -0.09 -3.42 5.81 -19.97 -0.12 -3.53 16 26 C 0.17 4.81 6.12 85.52 0.52 5.33 16 27 C -0.14 -2.60 6.78 32.13 0.22 -2.38 16 28 C 0.05 0.70 6.73 86.77 0.58 1.28 16 29 N -0.53 -8.46 5.44 -886.52 -4.83 -13.29 16 30 C 0.01 0.15 8.29 127.69 1.06 1.21 16 31 H 0.08 1.12 6.69 -2.39 -0.02 1.11 16 32 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.06 1.00 6.62 -2.39 -0.02 0.99 16 34 H 0.41 7.98 5.97 -92.71 -0.55 7.42 16 35 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.09 3.00 7.07 -2.39 -0.02 2.99 16 37 H 0.07 3.03 7.15 -2.39 -0.02 3.01 16 38 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.28 13.65 8.30 -92.70 -0.77 12.89 16 40 H 0.10 5.71 6.16 -2.91 -0.02 5.70 16 41 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 42 H 0.13 3.84 8.05 -2.91 -0.02 3.82 16 43 H 0.10 2.30 5.82 -2.38 -0.01 2.29 16 44 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.05 0.77 7.78 -2.39 -0.02 0.75 16 49 H 0.03 0.43 6.44 -2.39 -0.02 0.42 16 50 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 51 H 0.08 0.90 6.74 -2.39 -0.02 0.88 16 Total: -1.00 -64.14 389.52 -0.64 -64.77 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: 0.39 Total: 37.21 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 6.38 Total: -18.64 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -9.37 Total: -99.70 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.06 Total: -24.86 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -64.14 -0.64 -64.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925345425.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.269 kcal (2) G-P(sol) polarization free energy of solvation -64.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds