Wall clock time and date at job start Wed Apr 1 2020 03:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 110.36713 * 2 1 4 4 C 1.54370 * 110.41357 * 122.35561 * 2 1 3 5 5 H 1.09005 * 110.32319 * 261.52715 * 4 2 1 6 6 N 1.46507 * 110.32636 * 23.73334 * 4 2 1 7 7 C 1.34773 * 119.99934 * 202.09454 * 6 4 2 8 8 O 1.21589 * 120.00228 * 354.39824 * 7 6 4 9 9 N 1.34775 * 119.99886 * 174.40718 * 7 6 4 10 10 C 1.47243 * 121.34447 * 184.49391 * 9 7 6 11 11 C 1.52798 * 107.84800 * 115.98631 * 10 9 7 12 12 C 1.50562 * 110.87093 * 47.42044 * 11 10 9 13 13 C 1.41418 * 117.63749 * 159.77062 * 12 11 10 14 14 C 1.41395 * 119.96472 * 359.12534 * 13 12 11 15 15 H 1.07999 * 120.00586 * 34.55252 * 14 13 12 16 16 C 1.39950 * 119.99817 * 214.54995 * 14 13 12 17 17 N 1.30821 * 120.00199 * 356.92543 * 16 14 13 18 18 Si 1.86799 * 119.99988 * 176.91937 * 16 14 13 19 19 H 1.48497 * 109.47357 * 60.00244 * 18 16 14 20 20 H 1.48499 * 109.47183 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47084 * 300.00116 * 18 16 14 22 22 C 1.40401 * 120.06881 * 179.14691 * 13 12 11 23 23 C 1.37642 * 119.54157 * 0.21970 * 22 13 12 24 24 C 1.38331 * 119.98830 * 0.17994 * 23 22 13 25 25 C 1.37051 * 123.00052 * 339.66360 * 12 11 10 26 26 C 1.46672 * 121.34102 * 4.20623 * 9 7 6 27 27 C 1.54261 * 105.06257 * 142.62966 * 4 2 1 28 28 C 1.54376 * 105.14745 * 359.94814 * 27 4 2 29 29 N 1.48560 * 110.40840 * 237.52798 * 2 1 3 30 30 C 1.46901 * 111.00246 * 82.18192 * 29 2 1 31 31 H 1.09004 * 109.46615 * 297.64307 * 1 2 3 32 32 H 1.08992 * 109.47376 * 57.64218 * 1 2 3 33 33 H 1.08996 * 109.47279 * 177.64886 * 1 2 3 34 34 H 0.96996 * 119.99299 * 22.09215 * 6 4 2 35 35 H 1.08994 * 109.78262 * 235.57790 * 10 9 7 36 36 H 1.09003 * 109.78017 * 356.34582 * 10 9 7 37 37 H 1.08999 * 109.19128 * 167.77710 * 11 10 9 38 38 H 1.08994 * 109.19539 * 287.10391 * 11 10 9 39 39 H 0.96997 * 120.00366 * 179.97438 * 17 16 14 40 40 H 1.08000 * 120.23501 * 180.24321 * 22 13 12 41 41 H 1.08004 * 120.01084 * 180.19869 * 23 22 13 42 42 H 1.08008 * 119.47741 * 179.91838 * 24 23 22 43 43 H 1.09003 * 109.42404 * 344.42610 * 26 9 7 44 44 H 1.09002 * 109.42745 * 104.26661 * 26 9 7 45 45 H 1.09003 * 110.32358 * 118.89244 * 27 4 2 46 46 H 1.08998 * 110.32588 * 241.00292 * 27 4 2 47 47 H 1.08998 * 110.41372 * 94.97737 * 28 27 4 48 48 H 1.09003 * 110.41275 * 217.41626 * 28 27 4 49 49 H 1.08998 * 109.47444 * 59.99333 * 30 29 2 50 50 H 1.08995 * 109.47556 * 180.02562 * 30 29 2 51 51 H 1.09005 * 109.47200 * 299.99976 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0684 -0.7743 1.2221 5 1 2.3416 -0.0820 2.0186 6 7 1.0673 -1.7314 1.6997 7 6 1.1172 -2.1818 2.9689 8 8 2.0491 -1.8745 3.6869 9 7 0.1342 -2.9730 3.4423 10 6 0.1076 -3.4020 4.8506 11 6 -1.1410 -2.8052 5.4984 12 6 -2.3526 -3.0269 4.6325 13 6 -3.6231 -2.9422 5.2478 14 6 -3.7205 -2.6762 6.6331 15 1 -3.0038 -2.0238 7.1095 16 6 -4.7459 -3.2584 7.3870 17 7 -5.6493 -4.0002 6.7997 18 14 -4.8244 -2.9764 9.2319 19 1 -4.9590 -1.5230 9.5053 20 1 -5.9953 -3.6967 9.7934 21 1 -3.5808 -3.4858 9.8638 22 6 -4.7878 -3.1225 4.4847 23 6 -4.6826 -3.3860 3.1379 24 6 -3.4354 -3.4752 2.5461 25 6 -2.2721 -3.3011 3.2921 26 6 -0.9555 -3.4365 2.5769 27 6 3.3178 -1.5181 0.7068 28 6 3.4302 -1.1331 -0.7839 29 7 2.0481 -0.7475 -1.1747 30 6 2.0568 0.0989 -2.3753 31 1 -0.3633 0.4768 0.9104 32 1 -0.3634 0.5500 -0.8680 33 1 -0.3633 -1.0267 -0.0422 34 1 0.3686 -2.0408 1.1023 35 1 0.0670 -4.4898 4.9042 36 1 0.9989 -3.0403 5.3633 37 1 -1.3021 -3.2769 6.4678 38 1 -0.9941 -1.7347 5.6408 39 1 -6.3598 -4.4040 7.3222 40 1 -5.7595 -3.0545 4.9511 41 1 -5.5736 -3.5227 2.5430 42 1 -3.3625 -3.6836 1.4888 43 1 -0.9751 -2.8375 1.6664 44 1 -0.7931 -4.4828 2.3182 45 1 4.2042 -1.1909 1.2503 46 1 3.1868 -2.5952 0.8108 47 1 4.1093 -0.2897 -0.9085 48 1 3.7697 -1.9856 -1.3722 49 1 2.6945 0.9661 -2.2039 50 1 2.4400 -0.4731 -3.2203 51 1 1.0418 0.4316 -2.5927 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925345426.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:04 Heat of formation + Delta-G solvation = 7.075667 kcal Electronic energy + Delta-G solvation = -30822.526585 eV Core-core repulsion = 26914.442680 eV Total energy + Delta-G solvation = -3908.083905 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.48943 -39.21914 -37.97861 -35.44063 -34.47308 -33.60455 -32.10881 -31.69778 -30.57937 -29.96385 -28.62449 -25.95513 -25.25733 -25.20037 -24.75096 -22.89059 -21.31020 -20.74076 -20.58457 -19.75222 -18.93625 -17.44267 -17.08412 -16.37483 -15.85152 -15.48623 -15.36344 -15.20752 -14.88547 -14.53023 -14.29143 -13.97053 -13.78124 -13.48395 -13.32835 -13.19231 -12.95885 -12.74669 -12.56262 -12.39027 -12.28873 -11.84626 -11.76567 -11.60456 -11.46549 -11.39221 -11.37599 -11.20323 -11.06850 -10.97752 -10.86211 -10.83904 -10.44702 -10.17152 -9.89128 -9.68197 -9.38355 -9.12590 -9.02001 -8.76786 -8.10140 -7.29408 -7.20991 -6.63979 -4.42494 2.75885 2.84885 2.91727 3.07457 3.09928 3.18492 3.49213 3.68848 3.95243 4.14508 4.28847 4.53364 4.63881 4.87401 4.92883 5.00643 5.14654 5.17573 5.26790 5.35813 5.45711 5.52121 5.53059 5.59151 5.60035 5.64346 5.73927 5.79037 5.83963 5.91689 5.95686 6.01011 6.03658 6.09704 6.31378 6.34141 6.48081 6.53649 6.68295 6.71082 6.73814 6.86519 6.90789 7.09460 7.19456 7.32663 7.37283 7.60013 7.80613 8.00195 8.04610 8.20966 8.30538 8.62371 8.88296 8.89617 8.94266 10.26732 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.002714 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.661212 B =10313.179387 C =11102.152656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.050 3.950 3 H 0.064 0.936 4 C 0.168 3.832 5 H 0.092 0.908 6 N -0.738 5.738 7 C 0.711 3.289 8 O -0.601 6.601 9 N -0.621 5.621 10 C 0.131 3.869 11 C -0.071 4.071 12 C -0.158 4.158 13 C 0.105 3.895 14 C -0.461 4.461 15 H 0.076 0.924 16 C 0.072 3.928 17 N -0.810 5.810 18 Si 0.912 3.088 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.266 1.266 22 C -0.151 4.151 23 C -0.110 4.110 24 C -0.224 4.224 25 C -0.087 4.087 26 C 0.164 3.836 27 C -0.135 4.135 28 C 0.032 3.968 29 N -0.512 5.512 30 C 0.014 3.986 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.400 0.600 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.278 0.722 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.044 0.956 48 H 0.082 0.918 49 H 0.027 0.973 50 H 0.069 0.931 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.567 4.796 -13.077 18.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.059 4.059 3 H 0.082 0.918 4 C 0.061 3.939 5 H 0.110 0.890 6 N -0.397 5.397 7 C 0.413 3.587 8 O -0.480 6.480 9 N -0.357 5.357 10 C 0.009 3.991 11 C -0.109 4.109 12 C -0.159 4.159 13 C 0.103 3.897 14 C -0.492 4.492 15 H 0.094 0.906 16 C -0.144 4.144 17 N -0.437 5.437 18 Si 0.737 3.263 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.190 1.190 22 C -0.171 4.171 23 C -0.129 4.129 24 C -0.244 4.244 25 C -0.088 4.088 26 C 0.041 3.959 27 C -0.174 4.174 28 C -0.096 4.096 29 N -0.236 5.236 30 C -0.135 4.135 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.239 0.761 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.145 0.855 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.063 0.937 48 H 0.100 0.900 49 H 0.046 0.954 50 H 0.088 0.912 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.694 4.431 -12.616 17.763 hybrid contribution -0.156 0.524 0.523 0.757 sum 11.539 4.955 -12.092 17.433 Atomic orbital electron populations 1.21668 0.93070 1.02537 1.02119 1.22961 0.96999 0.95919 0.90025 0.91769 1.21374 0.87370 0.90113 0.95025 0.88958 1.45419 1.33710 1.48720 1.11884 1.15751 0.82340 0.78791 0.81822 1.90859 1.35107 1.63689 1.58350 1.47232 1.24489 1.52062 1.11873 1.21583 0.99441 0.98690 0.79432 1.20472 0.91554 1.00109 0.98750 1.19366 0.94234 1.09742 0.92583 1.17644 0.89851 0.89232 0.93009 1.19481 1.10525 1.26046 0.93132 0.90587 1.25853 0.94028 0.93497 1.00985 1.69747 1.11278 1.25094 1.37622 0.86302 0.78529 0.79387 0.82083 1.19080 1.20473 1.19027 1.21512 0.99727 1.04119 0.91740 1.20652 0.95414 1.01209 0.95615 1.20228 0.92308 1.14368 0.97486 1.18998 0.92482 1.03542 0.93772 1.20218 0.85104 0.98569 0.91997 1.22796 0.98325 1.02045 0.94272 1.23168 0.89678 1.00308 0.96410 1.65392 1.18233 1.37069 1.02922 1.22513 1.01925 0.95608 0.93448 0.91461 0.92405 0.91756 0.76083 0.91687 0.89517 0.90007 0.92646 0.91111 0.85544 0.89299 0.89463 0.91254 0.91693 0.90650 0.90298 0.93731 0.89989 0.95403 0.91239 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.68 37.16 0.32 -1.03 16 2 C 0.05 0.48 2.85 -66.07 -0.19 0.30 16 3 H 0.06 0.58 7.97 -51.93 -0.41 0.16 16 4 C 0.17 1.98 3.18 -66.55 -0.21 1.77 16 5 H 0.09 1.21 7.74 -51.93 -0.40 0.81 16 6 N -0.74 -10.06 4.36 -57.32 -0.25 -10.31 16 7 C 0.71 12.22 8.31 -86.92 -0.72 11.50 16 8 O -0.60 -12.00 15.60 5.29 0.08 -11.92 16 9 N -0.62 -10.77 2.94 -180.33 -0.53 -11.30 16 10 C 0.13 2.35 6.45 -3.74 -0.02 2.32 16 11 C -0.07 -1.44 5.01 -28.05 -0.14 -1.58 16 12 C -0.16 -3.59 5.82 -103.91 -0.60 -4.20 16 13 C 0.10 2.66 5.56 -106.67 -0.59 2.07 16 14 C -0.46 -11.73 7.80 -37.74 -0.29 -12.03 16 15 H 0.08 1.87 7.18 -52.49 -0.38 1.49 16 16 C 0.07 1.76 5.41 -17.34 -0.09 1.67 16 17 N -0.81 -20.59 10.62 55.55 0.59 -20.00 16 18 Si 0.91 18.64 29.56 -169.99 -5.02 13.62 16 19 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 C -0.15 -3.81 8.64 -38.99 -0.34 -4.14 16 23 C -0.11 -2.47 10.03 -39.76 -0.40 -2.87 16 24 C -0.22 -4.63 9.62 -39.16 -0.38 -5.01 16 25 C -0.09 -1.79 5.81 -104.79 -0.61 -2.40 16 26 C 0.16 2.72 6.12 -5.22 -0.03 2.69 16 27 C -0.13 -1.43 6.77 -25.35 -0.17 -1.60 16 28 C 0.03 0.28 6.51 -2.09 -0.01 0.27 16 29 N -0.51 -4.76 5.34 -230.21 -1.23 -5.99 16 30 C 0.01 0.10 9.45 60.07 0.57 0.67 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.51 7.54 -51.93 -0.39 0.11 16 33 H 0.06 0.68 6.22 -51.93 -0.32 0.35 16 34 H 0.40 5.04 3.98 -40.82 -0.16 4.88 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.09 1.54 7.07 -51.93 -0.37 1.17 16 37 H 0.08 1.69 7.15 -51.93 -0.37 1.32 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 40 H 0.13 3.33 6.16 -52.49 -0.32 3.01 16 41 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 42 H 0.09 1.56 8.05 -52.48 -0.42 1.13 16 43 H 0.07 1.00 5.82 -51.93 -0.30 0.70 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 0.95 7.95 -51.93 -0.41 0.53 16 47 H 0.04 0.35 7.91 -51.93 -0.41 -0.06 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.03 0.19 7.98 -51.93 -0.41 -0.23 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.07 0.50 7.47 -51.93 -0.39 0.11 16 LS Contribution 391.26 15.07 5.90 5.90 Total: -1.00 -28.41 391.26 -12.38 -40.79 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -8.00 Total: 10.80 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -3.92 Total: -11.59 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -1.42 Total: -47.60 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.08 Total: -11.92 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.41 -12.38 -40.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925345426.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.865 kcal (2) G-P(sol) polarization free energy of solvation -28.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds