Wall clock time and date at job start Wed Apr 1 2020 03:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 110.36713 * 2 1 4 4 C 1.54370 * 110.41357 * 122.35561 * 2 1 3 5 5 H 1.09005 * 110.32319 * 261.52715 * 4 2 1 6 6 N 1.46507 * 110.32636 * 23.73334 * 4 2 1 7 7 C 1.34773 * 119.99934 * 202.09454 * 6 4 2 8 8 O 1.21589 * 120.00228 * 354.39824 * 7 6 4 9 9 N 1.34775 * 119.99886 * 174.40718 * 7 6 4 10 10 C 1.47243 * 121.34447 * 184.49391 * 9 7 6 11 11 C 1.52798 * 107.84800 * 115.98631 * 10 9 7 12 12 C 1.50562 * 110.87093 * 47.42044 * 11 10 9 13 13 C 1.41418 * 117.63749 * 159.77062 * 12 11 10 14 14 C 1.41395 * 119.96472 * 359.12534 * 13 12 11 15 15 H 1.07999 * 120.00586 * 34.55252 * 14 13 12 16 16 C 1.39950 * 119.99817 * 214.54995 * 14 13 12 17 17 N 1.30821 * 120.00199 * 356.92543 * 16 14 13 18 18 Si 1.86799 * 119.99988 * 176.91937 * 16 14 13 19 19 H 1.48497 * 109.47357 * 60.00244 * 18 16 14 20 20 H 1.48499 * 109.47183 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47084 * 300.00116 * 18 16 14 22 22 C 1.40401 * 120.06881 * 179.14691 * 13 12 11 23 23 C 1.37642 * 119.54157 * 0.21970 * 22 13 12 24 24 C 1.38331 * 119.98830 * 0.17994 * 23 22 13 25 25 C 1.37051 * 123.00052 * 339.66360 * 12 11 10 26 26 C 1.46672 * 121.34102 * 4.20623 * 9 7 6 27 27 C 1.54261 * 105.06257 * 142.62966 * 4 2 1 28 28 C 1.54376 * 105.14745 * 359.94814 * 27 4 2 29 29 N 1.48560 * 110.40840 * 237.52798 * 2 1 3 30 30 C 1.46901 * 111.00246 * 82.18192 * 29 2 1 31 31 H 1.09004 * 109.46615 * 297.64307 * 1 2 3 32 32 H 1.08992 * 109.47376 * 57.64218 * 1 2 3 33 33 H 1.08996 * 109.47279 * 177.64886 * 1 2 3 34 34 H 0.96996 * 119.99299 * 22.09215 * 6 4 2 35 35 H 1.08994 * 109.78262 * 235.57790 * 10 9 7 36 36 H 1.09003 * 109.78017 * 356.34582 * 10 9 7 37 37 H 1.08999 * 109.19128 * 167.77710 * 11 10 9 38 38 H 1.08994 * 109.19539 * 287.10391 * 11 10 9 39 39 H 0.96997 * 120.00366 * 179.97438 * 17 16 14 40 40 H 1.08000 * 120.23501 * 180.24321 * 22 13 12 41 41 H 1.08004 * 120.01084 * 180.19869 * 23 22 13 42 42 H 1.08008 * 119.47741 * 179.91838 * 24 23 22 43 43 H 1.09003 * 109.42404 * 344.42610 * 26 9 7 44 44 H 1.09002 * 109.42745 * 104.26661 * 26 9 7 45 45 H 1.09003 * 110.32358 * 118.89244 * 27 4 2 46 46 H 1.08998 * 110.32588 * 241.00292 * 27 4 2 47 47 H 1.08998 * 110.41372 * 94.97737 * 28 27 4 48 48 H 1.09003 * 110.41275 * 217.41626 * 28 27 4 49 49 H 1.08998 * 109.47444 * 59.99333 * 30 29 2 50 50 H 1.08995 * 109.47556 * 180.02562 * 30 29 2 51 51 H 1.09005 * 109.47200 * 299.99976 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0684 -0.7743 1.2221 5 1 2.3416 -0.0820 2.0186 6 7 1.0673 -1.7314 1.6997 7 6 1.1172 -2.1818 2.9689 8 8 2.0491 -1.8745 3.6869 9 7 0.1342 -2.9730 3.4423 10 6 0.1076 -3.4020 4.8506 11 6 -1.1410 -2.8052 5.4984 12 6 -2.3526 -3.0269 4.6325 13 6 -3.6231 -2.9422 5.2478 14 6 -3.7205 -2.6762 6.6331 15 1 -3.0038 -2.0238 7.1095 16 6 -4.7459 -3.2584 7.3870 17 7 -5.6493 -4.0002 6.7997 18 14 -4.8244 -2.9764 9.2319 19 1 -4.9590 -1.5230 9.5053 20 1 -5.9953 -3.6967 9.7934 21 1 -3.5808 -3.4858 9.8638 22 6 -4.7878 -3.1225 4.4847 23 6 -4.6826 -3.3860 3.1379 24 6 -3.4354 -3.4752 2.5461 25 6 -2.2721 -3.3011 3.2921 26 6 -0.9555 -3.4365 2.5769 27 6 3.3178 -1.5181 0.7068 28 6 3.4302 -1.1331 -0.7839 29 7 2.0481 -0.7475 -1.1747 30 6 2.0568 0.0989 -2.3753 31 1 -0.3633 0.4768 0.9104 32 1 -0.3634 0.5500 -0.8680 33 1 -0.3633 -1.0267 -0.0422 34 1 0.3686 -2.0408 1.1023 35 1 0.0670 -4.4898 4.9042 36 1 0.9989 -3.0403 5.3633 37 1 -1.3021 -3.2769 6.4678 38 1 -0.9941 -1.7347 5.6408 39 1 -6.3598 -4.4040 7.3222 40 1 -5.7595 -3.0545 4.9511 41 1 -5.5736 -3.5227 2.5430 42 1 -3.3625 -3.6836 1.4888 43 1 -0.9751 -2.8375 1.6664 44 1 -0.7931 -4.4828 2.3182 45 1 4.2042 -1.1909 1.2503 46 1 3.1868 -2.5952 0.8108 47 1 4.1093 -0.2897 -0.9085 48 1 3.7697 -1.9856 -1.3722 49 1 2.6945 0.9661 -2.2039 50 1 2.4400 -0.4731 -3.2203 51 1 1.0418 0.4316 -2.5927 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925345426.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:02 Heat of formation + Delta-G solvation = -8.363941 kcal Electronic energy + Delta-G solvation = -30823.196096 eV Core-core repulsion = 26914.442680 eV Total energy + Delta-G solvation = -3908.753416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.70319 -40.37593 -39.43664 -36.97853 -35.61006 -35.35191 -33.57252 -32.51968 -31.91403 -31.35598 -30.20371 -27.10276 -26.80290 -26.17841 -25.92329 -24.39993 -22.39127 -22.29140 -21.82566 -20.74661 -20.36652 -18.85495 -18.84006 -17.57085 -17.16372 -16.83341 -16.53066 -16.36439 -16.00142 -15.71548 -15.61401 -15.37763 -15.08024 -15.01609 -14.69979 -14.30150 -14.20573 -13.89826 -13.67685 -13.57089 -13.41954 -13.28587 -13.07329 -12.96948 -12.84735 -12.63096 -12.57124 -12.52719 -12.33780 -12.11583 -12.06215 -11.91788 -11.83255 -11.72440 -11.51020 -11.23559 -11.11773 -10.92281 -10.20105 -9.53746 -9.42047 -9.06219 -8.98980 -8.46531 -6.33784 1.01315 1.08371 1.38647 1.48273 1.52798 1.64943 2.15631 2.23604 2.80885 2.93899 3.00049 3.47241 3.65603 3.74797 3.97617 4.07709 4.14292 4.20475 4.24895 4.31495 4.41539 4.45929 4.48670 4.51124 4.59972 4.61002 4.65408 4.68042 4.77553 4.83244 4.85166 4.93192 4.94768 5.03212 5.06773 5.09155 5.16774 5.17693 5.25256 5.31752 5.39664 5.41145 5.58440 5.62348 5.80374 5.86077 5.96724 6.06283 6.10739 6.19826 6.23561 6.43882 6.77555 6.98188 7.02823 7.10405 7.56367 8.45164 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.002714 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.661212 B =10313.179387 C =11102.152656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.058 3.942 3 H 0.075 0.925 4 C 0.160 3.840 5 H 0.075 0.925 6 N -0.723 5.723 7 C 0.708 3.292 8 O -0.632 6.632 9 N -0.624 5.624 10 C 0.139 3.861 11 C -0.063 4.063 12 C -0.172 4.172 13 C 0.071 3.929 14 C -0.490 4.490 15 H 0.071 0.929 16 C 0.030 3.970 17 N -0.842 5.842 18 Si 0.978 3.022 19 H -0.264 1.264 20 H -0.272 1.272 21 H -0.262 1.262 22 C -0.181 4.181 23 C -0.117 4.117 24 C -0.214 4.214 25 C -0.088 4.088 26 C 0.169 3.831 27 C -0.132 4.132 28 C 0.039 3.961 29 N -0.521 5.521 30 C 0.013 3.987 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.407 0.593 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.281 0.719 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.090 0.910 49 H 0.035 0.965 50 H 0.078 0.922 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.863 4.821 -15.490 20.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.051 4.051 3 H 0.092 0.908 4 C 0.054 3.946 5 H 0.093 0.907 6 N -0.382 5.382 7 C 0.410 3.590 8 O -0.513 6.513 9 N -0.359 5.359 10 C 0.016 3.984 11 C -0.101 4.101 12 C -0.174 4.174 13 C 0.069 3.931 14 C -0.521 4.521 15 H 0.089 0.911 16 C -0.182 4.182 17 N -0.470 5.470 18 Si 0.799 3.201 19 H -0.188 1.188 20 H -0.196 1.196 21 H -0.186 1.186 22 C -0.201 4.201 23 C -0.136 4.136 24 C -0.233 4.233 25 C -0.089 4.089 26 C 0.046 3.954 27 C -0.171 4.171 28 C -0.089 4.089 29 N -0.246 5.246 30 C -0.135 4.135 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.247 0.753 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.145 0.855 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.108 0.892 49 H 0.053 0.947 50 H 0.096 0.904 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.990 4.465 -15.082 20.400 hybrid contribution -0.521 0.544 1.112 1.343 sum 12.469 5.008 -13.970 19.384 Atomic orbital electron populations 1.21640 0.93136 1.02293 1.02153 1.22878 0.96875 0.96078 0.89278 0.90760 1.21535 0.87730 0.89856 0.95464 0.90657 1.45351 1.34030 1.48229 1.10637 1.15889 0.81915 0.78562 0.82612 1.90838 1.36336 1.64709 1.59464 1.47222 1.24820 1.52267 1.11635 1.21439 0.97883 0.99139 0.79953 1.20359 0.92075 0.99324 0.98306 1.19689 0.93990 1.09672 0.94030 1.17999 0.91157 0.90399 0.93502 1.19653 1.11444 1.27183 0.93863 0.91122 1.26629 0.93412 0.92984 1.05150 1.69842 1.11932 1.26122 1.39122 0.85311 0.78702 0.79276 0.76771 1.18810 1.19612 1.18621 1.21450 0.98822 1.06601 0.93253 1.20936 0.97339 1.00578 0.94720 1.20663 0.91357 1.11950 0.99333 1.19443 0.94723 1.01608 0.93117 1.20310 0.82605 1.00453 0.92019 1.22724 0.97637 1.00900 0.95834 1.23143 0.89809 1.01115 0.94825 1.65393 1.18487 1.37553 1.03154 1.22564 1.02448 0.95743 0.92759 0.92726 0.90983 0.92166 0.75259 0.90477 0.89513 0.91079 0.93935 0.90819 0.87889 0.87227 0.85520 0.88478 0.89479 0.90648 0.91672 0.92442 0.89171 0.94677 0.90370 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.68 71.98 0.62 -1.71 16 2 C 0.06 0.99 2.85 45.06 0.13 1.12 16 3 H 0.07 1.14 7.97 -2.38 -0.02 1.13 16 4 C 0.16 3.55 3.18 45.88 0.15 3.70 16 5 H 0.08 1.94 7.74 -2.38 -0.02 1.92 16 6 N -0.72 -18.39 4.36 -453.53 -1.98 -20.37 16 7 C 0.71 23.45 8.31 179.06 1.49 24.94 16 8 O -0.63 -24.97 15.60 -3.99 -0.06 -25.03 16 9 N -0.62 -20.62 2.94 -842.71 -2.48 -23.10 16 10 C 0.14 4.89 6.45 86.17 0.56 5.45 16 11 C -0.06 -2.60 5.01 29.74 0.15 -2.45 16 12 C -0.17 -7.91 5.82 -19.40 -0.11 -8.03 16 13 C 0.07 3.75 5.56 -21.19 -0.12 3.63 16 14 C -0.49 -26.11 7.80 23.46 0.18 -25.93 16 15 H 0.07 3.67 7.18 -2.91 -0.02 3.65 16 16 C 0.03 1.53 5.41 85.26 0.46 1.99 16 17 N -0.84 -44.52 10.62 21.83 0.23 -44.29 16 18 Si 0.98 39.28 29.56 68.60 2.03 41.31 16 19 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 22 C -0.18 -9.42 8.64 22.66 0.20 -9.22 16 23 C -0.12 -5.18 10.03 22.15 0.22 -4.96 16 24 C -0.21 -8.28 9.62 22.55 0.22 -8.06 16 25 C -0.09 -3.47 5.81 -19.97 -0.12 -3.59 16 26 C 0.17 5.08 6.12 85.52 0.52 5.61 16 27 C -0.13 -2.57 6.77 31.49 0.21 -2.36 16 28 C 0.04 0.57 6.51 86.42 0.56 1.13 16 29 N -0.52 -8.12 5.34 -882.25 -4.71 -12.83 16 30 C 0.01 0.15 9.45 127.69 1.21 1.36 16 31 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.07 1.05 7.54 -2.39 -0.02 1.03 16 33 H 0.06 1.09 6.22 -2.39 -0.01 1.07 16 34 H 0.41 9.12 3.98 -92.71 -0.37 8.75 16 35 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.09 3.06 7.07 -2.39 -0.02 3.05 16 37 H 0.07 3.05 7.15 -2.39 -0.02 3.04 16 38 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.28 13.69 8.30 -92.71 -0.77 12.92 16 40 H 0.10 5.74 6.16 -2.91 -0.02 5.72 16 41 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 42 H 0.13 3.91 8.05 -2.91 -0.02 3.89 16 43 H 0.10 2.41 5.82 -2.39 -0.01 2.39 16 44 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.06 1.46 7.95 -2.39 -0.02 1.44 16 47 H 0.06 0.71 7.91 -2.39 -0.02 0.70 16 48 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.03 0.36 7.98 -2.39 -0.02 0.34 16 50 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.07 0.81 7.47 -2.38 -0.02 0.79 16 Total: -1.00 -63.59 391.26 0.13 -63.46 By element: Atomic # 1 Polarization: 37.67 SS G_CDS: 0.57 Total: 38.24 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 6.53 Total: -17.39 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -8.93 Total: -100.59 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.06 Total: -25.03 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -63.59 0.13 -63.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925345426.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.092 kcal (2) G-P(sol) polarization free energy of solvation -63.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds