Wall clock time and date at job start Wed Apr 1 2020 03:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 110.36739 * 2 1 4 4 C 1.54382 * 110.41154 * 122.34720 * 2 1 3 5 5 H 1.09003 * 110.32128 * 23.75393 * 4 2 1 6 6 N 1.46502 * 110.32602 * 261.64797 * 4 2 1 7 7 C 1.34779 * 119.99936 * 156.42493 * 6 4 2 8 8 O 1.21590 * 119.99623 * 354.99445 * 7 6 4 9 9 N 1.34775 * 119.99938 * 174.99175 * 7 6 4 10 10 C 1.47241 * 121.34199 * 184.81662 * 9 7 6 11 11 C 1.52791 * 107.86181 * 115.98470 * 10 9 7 12 12 C 1.50570 * 110.88383 * 47.35502 * 11 10 9 13 13 C 1.41421 * 117.62919 * 160.39766 * 12 11 10 14 14 C 1.41394 * 119.96658 * 358.40884 * 13 12 11 15 15 H 1.08001 * 120.00417 * 29.93482 * 14 13 12 16 16 C 1.39948 * 119.99539 * 209.93872 * 14 13 12 17 17 N 1.30825 * 120.00160 * 9.92866 * 16 14 13 18 18 Si 1.86801 * 120.00011 * 189.92738 * 16 14 13 19 19 H 1.48499 * 109.46985 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47060 * 119.99844 * 18 16 14 21 21 H 1.48500 * 109.47193 * 239.99939 * 18 16 14 22 22 C 1.40401 * 120.06395 * 178.42440 * 13 12 11 23 23 C 1.37651 * 119.54138 * 0.35980 * 22 13 12 24 24 C 1.38339 * 119.98632 * 0.43124 * 23 22 13 25 25 C 1.37044 * 122.99779 * 339.69148 * 12 11 10 26 26 C 1.46661 * 121.34491 * 4.79915 * 9 7 6 27 27 C 1.54258 * 105.14648 * 142.70073 * 4 2 1 28 28 C 1.54608 * 104.95387 * 0.07788 * 27 4 2 29 29 N 1.48557 * 110.51587 * 237.57974 * 2 1 3 30 30 C 1.46904 * 110.99704 * 82.12957 * 29 2 1 31 31 H 1.08998 * 109.47270 * 297.65187 * 1 2 3 32 32 H 1.09003 * 109.46764 * 57.65225 * 1 2 3 33 33 H 1.08998 * 109.46878 * 177.64545 * 1 2 3 34 34 H 0.96996 * 119.99851 * 336.42481 * 6 4 2 35 35 H 1.08995 * 109.78312 * 235.57384 * 10 9 7 36 36 H 1.08993 * 109.78055 * 356.34217 * 10 9 7 37 37 H 1.08998 * 109.19881 * 286.99049 * 11 10 9 38 38 H 1.09007 * 109.19050 * 167.71704 * 11 10 9 39 39 H 0.96996 * 119.99961 * 180.02562 * 17 16 14 40 40 H 1.07996 * 120.23209 * 180.33869 * 22 13 12 41 41 H 1.07994 * 120.00912 * 180.15378 * 23 22 13 42 42 H 1.08003 * 119.46982 * 179.56618 * 24 23 22 43 43 H 1.09001 * 109.43016 * 104.36457 * 26 9 7 44 44 H 1.09004 * 109.43355 * 344.51950 * 26 9 7 45 45 H 1.09000 * 110.32448 * 118.95281 * 27 4 2 46 46 H 1.09008 * 110.32297 * 241.15740 * 27 4 2 47 47 H 1.08992 * 110.36856 * 217.31474 * 28 27 4 48 48 H 1.09007 * 110.55799 * 94.92023 * 28 27 4 49 49 H 1.09003 * 109.46798 * 60.00370 * 30 29 2 50 50 H 1.09003 * 109.47217 * 180.02562 * 30 29 2 51 51 H 1.08998 * 109.47254 * 300.00296 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7742 1.2224 5 1 1.3236 -1.4864 1.5774 6 7 2.4330 0.1562 2.2937 7 6 2.4670 -0.2685 3.5724 8 8 2.1080 -1.3970 3.8479 9 7 2.8991 0.5577 4.5456 10 6 3.0480 0.0929 5.9348 11 6 4.5294 0.1735 6.2998 12 6 5.1104 1.5024 5.8952 13 6 6.3134 1.9091 6.5177 14 6 6.9082 1.0920 7.5065 15 1 6.7816 0.0201 7.4692 16 6 7.6611 1.6724 8.5335 17 7 7.6564 2.9706 8.6948 18 14 8.6728 0.5932 9.6744 19 1 8.5084 -0.8301 9.2842 20 1 10.1050 0.9725 9.5735 21 1 8.2087 0.7795 11.0726 22 6 6.9173 3.1235 6.1549 23 6 6.3265 3.9158 5.1968 24 6 5.1412 3.5176 4.6051 25 6 4.5344 2.3127 4.9519 26 6 3.2404 1.9559 4.2636 27 6 3.3191 -1.5175 0.7097 28 6 3.4318 -1.1270 -0.7820 29 7 2.0507 -0.7459 -1.1745 30 6 2.0593 0.1013 -2.3746 31 1 -0.3634 0.4769 0.9103 32 1 -0.3633 0.5499 -0.8682 33 1 -0.3633 -1.0268 -0.0422 34 1 2.6498 1.0778 2.0828 35 1 2.4685 0.7314 6.6015 36 1 2.7022 -0.9374 6.0180 37 1 5.0685 -0.6239 5.7883 38 1 4.6406 0.0466 7.3767 39 1 8.1785 3.3729 9.4064 40 1 7.8389 3.4341 6.6246 41 1 6.7859 4.8503 4.9103 42 1 4.6812 4.1491 3.8594 43 1 2.4443 2.6044 4.6294 44 1 3.3524 2.0920 3.1879 45 1 4.2042 -1.1903 1.2553 46 1 3.1875 -2.5948 0.8115 47 1 3.7737 -1.9774 -1.3719 48 1 4.1092 -0.2821 -0.9063 49 1 2.6954 0.9694 -2.2019 50 1 2.4444 -0.4695 -3.2196 51 1 1.0440 0.4325 -2.5928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925345427.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:08 Heat of formation + Delta-G solvation = 0.601252 kcal Electronic energy + Delta-G solvation = -30592.529182 eV Core-core repulsion = 26684.164526 eV Total energy + Delta-G solvation = -3908.364656 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.44540 -39.23894 -38.02656 -35.49262 -34.50264 -33.65994 -32.13527 -31.62969 -30.78129 -30.03376 -28.69888 -25.84462 -25.31099 -25.20088 -24.67752 -22.88545 -21.42364 -20.78560 -20.51943 -20.13372 -18.72964 -17.47061 -17.14674 -16.61702 -15.73676 -15.55830 -15.27839 -15.15555 -14.96337 -14.47968 -14.16674 -14.02616 -13.76167 -13.68839 -13.37140 -13.25470 -13.20744 -12.77969 -12.55682 -12.40576 -12.11524 -11.91150 -11.71626 -11.66918 -11.56720 -11.47585 -11.40465 -11.28858 -11.20248 -11.01688 -10.88083 -10.76157 -10.48404 -10.21934 -9.92915 -9.68884 -9.32067 -9.25442 -9.01524 -8.83271 -8.15241 -7.33206 -7.31376 -6.75298 -4.43604 2.70332 2.80718 2.81713 3.05719 3.10798 3.13649 3.44169 3.70163 3.90862 4.15022 4.25710 4.53144 4.56931 4.85411 4.94232 5.01201 5.16406 5.17984 5.21861 5.30634 5.49151 5.51484 5.52227 5.54581 5.59083 5.63567 5.74387 5.77284 5.87035 5.91773 5.95365 5.98949 6.00876 6.05302 6.27458 6.31142 6.39468 6.44634 6.64045 6.69419 6.73933 6.83787 6.86642 7.04445 7.13335 7.26536 7.30099 7.55183 7.77094 7.95493 8.00221 8.13581 8.24587 8.57285 8.82244 8.83974 8.89781 10.18472 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.002612 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.196144 B =10718.676548 C =11085.160157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.052 3.948 3 H 0.056 0.944 4 C 0.165 3.835 5 H 0.101 0.899 6 N -0.744 5.744 7 C 0.713 3.287 8 O -0.596 6.596 9 N -0.621 5.621 10 C 0.131 3.869 11 C -0.071 4.071 12 C -0.164 4.164 13 C 0.110 3.890 14 C -0.459 4.459 15 H 0.079 0.921 16 C 0.074 3.926 17 N -0.801 5.801 18 Si 0.908 3.092 19 H -0.260 1.260 20 H -0.273 1.273 21 H -0.274 1.274 22 C -0.157 4.157 23 C -0.106 4.106 24 C -0.232 4.232 25 C -0.083 4.083 26 C 0.164 3.836 27 C -0.138 4.138 28 C 0.032 3.968 29 N -0.509 5.509 30 C 0.014 3.986 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.394 0.606 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.279 0.721 40 H 0.119 0.881 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.046 0.954 49 H 0.029 0.971 50 H 0.070 0.930 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.905 -2.292 -14.536 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.057 4.057 3 H 0.074 0.926 4 C 0.058 3.942 5 H 0.119 0.881 6 N -0.402 5.402 7 C 0.415 3.585 8 O -0.475 6.475 9 N -0.357 5.357 10 C 0.009 3.991 11 C -0.108 4.108 12 C -0.165 4.165 13 C 0.107 3.893 14 C -0.489 4.489 15 H 0.097 0.903 16 C -0.143 4.143 17 N -0.427 5.427 18 Si 0.733 3.267 19 H -0.184 1.184 20 H -0.199 1.199 21 H -0.200 1.200 22 C -0.176 4.176 23 C -0.125 4.125 24 C -0.252 4.252 25 C -0.084 4.084 26 C 0.041 3.959 27 C -0.177 4.177 28 C -0.096 4.096 29 N -0.233 5.233 30 C -0.135 4.135 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.230 0.770 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.137 0.863 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.064 0.936 49 H 0.047 0.953 50 H 0.089 0.911 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.407 -3.424 -14.306 17.460 hybrid contribution 1.343 1.157 0.576 1.863 sum -8.064 -2.268 -13.730 16.084 Atomic orbital electron populations 1.21696 0.93037 1.02887 1.01603 1.22884 0.96743 0.95890 0.90139 0.92576 1.21490 0.96559 0.90909 0.85202 0.88056 1.45362 1.75486 1.14157 1.05195 1.15702 0.78282 0.84172 0.80344 1.90872 1.55580 1.19118 1.81966 1.47248 1.68512 1.11107 1.08795 1.21588 0.97491 1.00466 0.79581 1.20464 0.93011 0.95735 1.01629 1.19296 0.97343 0.97247 1.02625 1.17626 0.89104 0.92187 0.90357 1.19604 1.27055 0.94987 1.07279 0.90285 1.25885 0.95160 0.95184 0.98066 1.69797 1.33234 1.11060 1.28615 0.86258 0.79675 0.81171 0.79630 1.18415 1.19857 1.19985 1.21297 1.01124 0.96954 0.98223 1.20598 0.95909 0.98258 0.97730 1.20173 1.00048 0.98168 1.06770 1.19064 0.95124 0.95871 0.98297 1.20302 0.95685 0.81383 0.98539 1.22844 0.98783 1.01621 0.94478 1.23190 0.89569 1.00502 0.96342 1.65334 1.18299 1.36941 1.02741 1.22527 1.01870 0.95710 0.93414 0.91945 0.92629 0.91426 0.76984 0.91622 0.89473 0.92670 0.90046 0.91039 0.86334 0.89352 0.89578 0.91612 0.91359 0.90432 0.90217 0.89887 0.93617 0.95277 0.91106 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 9.31 37.16 0.35 -0.82 16 2 C 0.05 0.51 2.59 -66.07 -0.17 0.33 16 3 H 0.06 0.52 7.57 -51.92 -0.39 0.13 16 4 C 0.16 1.97 2.97 -66.55 -0.20 1.77 16 5 H 0.10 1.39 7.25 -51.93 -0.38 1.01 16 6 N -0.74 -9.85 4.94 -57.32 -0.28 -10.13 16 7 C 0.71 12.09 8.32 -86.92 -0.72 11.37 16 8 O -0.60 -11.90 15.48 5.29 0.08 -11.82 16 9 N -0.62 -10.59 2.94 -180.11 -0.53 -11.12 16 10 C 0.13 2.32 6.45 -3.74 -0.02 2.30 16 11 C -0.07 -1.42 4.96 -28.05 -0.14 -1.56 16 12 C -0.16 -3.70 5.82 -103.91 -0.60 -4.31 16 13 C 0.11 2.77 5.55 -106.67 -0.59 2.17 16 14 C -0.46 -11.59 7.94 -37.74 -0.30 -11.89 16 15 H 0.08 1.94 6.97 -52.49 -0.37 1.57 16 16 C 0.07 1.79 5.25 -17.34 -0.09 1.70 16 17 N -0.80 -20.16 10.87 55.55 0.60 -19.56 16 18 Si 0.91 18.37 29.57 -169.99 -5.03 13.34 16 19 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 22 C -0.16 -3.91 8.62 -38.98 -0.34 -4.25 16 23 C -0.11 -2.37 10.03 -39.76 -0.40 -2.77 16 24 C -0.23 -4.76 9.63 -39.15 -0.38 -5.14 16 25 C -0.08 -1.69 5.82 -104.59 -0.61 -2.30 16 26 C 0.16 2.65 6.16 -5.04 -0.03 2.62 16 27 C -0.14 -1.60 6.80 -25.23 -0.17 -1.77 16 28 C 0.03 0.31 6.50 -2.06 -0.01 0.29 16 29 N -0.51 -4.83 5.35 -230.19 -1.23 -6.06 16 30 C 0.01 0.10 9.45 60.07 0.57 0.67 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.42 7.54 -51.93 -0.39 0.03 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.39 4.56 5.95 -40.82 -0.24 4.32 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.53 7.07 -51.93 -0.37 1.16 16 37 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.08 1.66 7.09 -51.92 -0.37 1.30 16 39 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 40 H 0.12 3.09 6.27 -52.49 -0.33 2.76 16 41 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.09 1.52 8.05 -52.48 -0.42 1.10 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 0.94 5.81 -51.93 -0.30 0.64 16 45 H 0.08 1.01 7.95 -51.93 -0.41 0.60 16 46 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 49 H 0.03 0.22 7.97 -51.93 -0.41 -0.20 16 50 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.07 0.48 7.48 -51.93 -0.39 0.09 16 LS Contribution 395.00 15.07 5.95 5.95 Total: -1.00 -28.44 395.00 -12.42 -40.86 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -8.12 Total: 10.11 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -3.87 Total: -11.57 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -1.44 Total: -46.87 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.44 -12.42 -40.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925345427.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.458 kcal (2) G-P(sol) polarization free energy of solvation -28.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds