Wall clock time and date at job start Wed Apr 1 2020 03:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 110.36739 * 2 1 4 4 C 1.54382 * 110.41154 * 122.34720 * 2 1 3 5 5 H 1.09003 * 110.32128 * 23.75393 * 4 2 1 6 6 N 1.46502 * 110.32602 * 261.64797 * 4 2 1 7 7 C 1.34779 * 119.99936 * 156.42493 * 6 4 2 8 8 O 1.21590 * 119.99623 * 354.99445 * 7 6 4 9 9 N 1.34775 * 119.99938 * 174.99175 * 7 6 4 10 10 C 1.47241 * 121.34199 * 184.81662 * 9 7 6 11 11 C 1.52791 * 107.86181 * 115.98470 * 10 9 7 12 12 C 1.50570 * 110.88383 * 47.35502 * 11 10 9 13 13 C 1.41421 * 117.62919 * 160.39766 * 12 11 10 14 14 C 1.41394 * 119.96658 * 358.40884 * 13 12 11 15 15 H 1.08001 * 120.00417 * 29.93482 * 14 13 12 16 16 C 1.39948 * 119.99539 * 209.93872 * 14 13 12 17 17 N 1.30825 * 120.00160 * 9.92866 * 16 14 13 18 18 Si 1.86801 * 120.00011 * 189.92738 * 16 14 13 19 19 H 1.48499 * 109.46985 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47060 * 119.99844 * 18 16 14 21 21 H 1.48500 * 109.47193 * 239.99939 * 18 16 14 22 22 C 1.40401 * 120.06395 * 178.42440 * 13 12 11 23 23 C 1.37651 * 119.54138 * 0.35980 * 22 13 12 24 24 C 1.38339 * 119.98632 * 0.43124 * 23 22 13 25 25 C 1.37044 * 122.99779 * 339.69148 * 12 11 10 26 26 C 1.46661 * 121.34491 * 4.79915 * 9 7 6 27 27 C 1.54258 * 105.14648 * 142.70073 * 4 2 1 28 28 C 1.54608 * 104.95387 * 0.07788 * 27 4 2 29 29 N 1.48557 * 110.51587 * 237.57974 * 2 1 3 30 30 C 1.46904 * 110.99704 * 82.12957 * 29 2 1 31 31 H 1.08998 * 109.47270 * 297.65187 * 1 2 3 32 32 H 1.09003 * 109.46764 * 57.65225 * 1 2 3 33 33 H 1.08998 * 109.46878 * 177.64545 * 1 2 3 34 34 H 0.96996 * 119.99851 * 336.42481 * 6 4 2 35 35 H 1.08995 * 109.78312 * 235.57384 * 10 9 7 36 36 H 1.08993 * 109.78055 * 356.34217 * 10 9 7 37 37 H 1.08998 * 109.19881 * 286.99049 * 11 10 9 38 38 H 1.09007 * 109.19050 * 167.71704 * 11 10 9 39 39 H 0.96996 * 119.99961 * 180.02562 * 17 16 14 40 40 H 1.07996 * 120.23209 * 180.33869 * 22 13 12 41 41 H 1.07994 * 120.00912 * 180.15378 * 23 22 13 42 42 H 1.08003 * 119.46982 * 179.56618 * 24 23 22 43 43 H 1.09001 * 109.43016 * 104.36457 * 26 9 7 44 44 H 1.09004 * 109.43355 * 344.51950 * 26 9 7 45 45 H 1.09000 * 110.32448 * 118.95281 * 27 4 2 46 46 H 1.09008 * 110.32297 * 241.15740 * 27 4 2 47 47 H 1.08992 * 110.36856 * 217.31474 * 28 27 4 48 48 H 1.09007 * 110.55799 * 94.92023 * 28 27 4 49 49 H 1.09003 * 109.46798 * 60.00370 * 30 29 2 50 50 H 1.09003 * 109.47217 * 180.02562 * 30 29 2 51 51 H 1.08998 * 109.47254 * 300.00296 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7742 1.2224 5 1 1.3236 -1.4864 1.5774 6 7 2.4330 0.1562 2.2937 7 6 2.4670 -0.2685 3.5724 8 8 2.1080 -1.3970 3.8479 9 7 2.8991 0.5577 4.5456 10 6 3.0480 0.0929 5.9348 11 6 4.5294 0.1735 6.2998 12 6 5.1104 1.5024 5.8952 13 6 6.3134 1.9091 6.5177 14 6 6.9082 1.0920 7.5065 15 1 6.7816 0.0201 7.4692 16 6 7.6611 1.6724 8.5335 17 7 7.6564 2.9706 8.6948 18 14 8.6728 0.5932 9.6744 19 1 8.5084 -0.8301 9.2842 20 1 10.1050 0.9725 9.5735 21 1 8.2087 0.7795 11.0726 22 6 6.9173 3.1235 6.1549 23 6 6.3265 3.9158 5.1968 24 6 5.1412 3.5176 4.6051 25 6 4.5344 2.3127 4.9519 26 6 3.2404 1.9559 4.2636 27 6 3.3191 -1.5175 0.7097 28 6 3.4318 -1.1270 -0.7820 29 7 2.0507 -0.7459 -1.1745 30 6 2.0593 0.1013 -2.3746 31 1 -0.3634 0.4769 0.9103 32 1 -0.3633 0.5499 -0.8682 33 1 -0.3633 -1.0268 -0.0422 34 1 2.6498 1.0778 2.0828 35 1 2.4685 0.7314 6.6015 36 1 2.7022 -0.9374 6.0180 37 1 5.0685 -0.6239 5.7883 38 1 4.6406 0.0466 7.3767 39 1 8.1785 3.3729 9.4064 40 1 7.8389 3.4341 6.6246 41 1 6.7859 4.8503 4.9103 42 1 4.6812 4.1491 3.8594 43 1 2.4443 2.6044 4.6294 44 1 3.3524 2.0920 3.1879 45 1 4.2042 -1.1903 1.2553 46 1 3.1875 -2.5948 0.8115 47 1 3.7737 -1.9774 -1.3719 48 1 4.1092 -0.2821 -0.9063 49 1 2.6954 0.9694 -2.2019 50 1 2.4444 -0.4695 -3.2196 51 1 1.0440 0.4325 -2.5928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925345427.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:07 Heat of formation + Delta-G solvation = -15.349125 kcal Electronic energy + Delta-G solvation = -30593.220842 eV Core-core repulsion = 26684.164526 eV Total energy + Delta-G solvation = -3909.056316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.67918 -40.36349 -39.48104 -37.01242 -35.66036 -35.39247 -33.60601 -32.39908 -32.01272 -31.49506 -30.27926 -27.14024 -26.77592 -26.05596 -25.91590 -24.36079 -22.49024 -22.39774 -21.56610 -21.39191 -20.08366 -18.90491 -18.77566 -17.79732 -17.21415 -16.79617 -16.53395 -16.35521 -15.99554 -15.82862 -15.49737 -15.30714 -15.14644 -14.80846 -14.69115 -14.55467 -14.24691 -14.02185 -13.89049 -13.54116 -13.43176 -13.18665 -13.02413 -12.92311 -12.81488 -12.66686 -12.58944 -12.56663 -12.41963 -12.23351 -12.12114 -12.05606 -11.88902 -11.64938 -11.49532 -11.23460 -11.06386 -11.03111 -10.21421 -9.53310 -9.51727 -9.11691 -9.03956 -8.55860 -6.32799 0.98267 1.06464 1.37488 1.48995 1.50683 1.57699 2.12102 2.21026 2.74745 2.79760 3.14974 3.43098 3.66681 3.71826 3.95335 4.03088 4.12183 4.15244 4.24627 4.30045 4.38946 4.44085 4.47878 4.49482 4.56563 4.59529 4.65354 4.73797 4.75916 4.84496 4.85306 4.92840 4.98119 5.00463 5.05780 5.08832 5.10533 5.14845 5.23347 5.35040 5.35136 5.37785 5.45941 5.58119 5.77627 5.86044 5.92503 6.02705 6.07493 6.18439 6.19756 6.40706 6.74355 6.93690 6.99481 7.07882 7.52318 8.39594 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.002612 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.196144 B =10718.676548 C =11085.160157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.060 3.940 3 H 0.067 0.933 4 C 0.162 3.838 5 H 0.081 0.919 6 N -0.728 5.728 7 C 0.711 3.289 8 O -0.630 6.630 9 N -0.623 5.623 10 C 0.139 3.861 11 C -0.062 4.062 12 C -0.179 4.179 13 C 0.076 3.924 14 C -0.490 4.490 15 H 0.072 0.928 16 C 0.033 3.967 17 N -0.834 5.834 18 Si 0.975 3.025 19 H -0.261 1.261 20 H -0.268 1.268 21 H -0.267 1.267 22 C -0.187 4.187 23 C -0.114 4.114 24 C -0.221 4.221 25 C -0.084 4.084 26 C 0.168 3.832 27 C -0.138 4.138 28 C 0.039 3.961 29 N -0.518 5.518 30 C 0.013 3.987 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.405 0.595 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.284 0.716 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.127 0.873 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.051 0.949 49 H 0.033 0.967 50 H 0.078 0.922 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.371 -1.382 -16.785 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.049 4.049 3 H 0.085 0.915 4 C 0.056 3.944 5 H 0.099 0.901 6 N -0.386 5.386 7 C 0.413 3.587 8 O -0.512 6.512 9 N -0.359 5.359 10 C 0.016 3.984 11 C -0.100 4.100 12 C -0.181 4.181 13 C 0.074 3.926 14 C -0.520 4.520 15 H 0.091 0.909 16 C -0.180 4.180 17 N -0.462 5.462 18 Si 0.797 3.203 19 H -0.185 1.185 20 H -0.193 1.193 21 H -0.192 1.192 22 C -0.207 4.207 23 C -0.132 4.132 24 C -0.241 4.241 25 C -0.085 4.085 26 C 0.045 3.955 27 C -0.177 4.177 28 C -0.089 4.089 29 N -0.243 5.243 30 C -0.135 4.135 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.243 0.757 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.127 0.873 42 H 0.145 0.855 43 H 0.108 0.892 44 H 0.118 0.882 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.109 0.891 48 H 0.069 0.931 49 H 0.052 0.948 50 H 0.097 0.903 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.879 -2.484 -16.600 20.002 hybrid contribution 1.734 0.910 1.137 2.265 sum -9.145 -1.574 -15.462 18.033 Atomic orbital electron populations 1.21669 0.92278 1.02640 1.02286 1.22834 0.97242 0.95887 0.88911 0.91466 1.21568 0.96299 0.90882 0.85616 0.90068 1.45233 1.74403 1.14861 1.04076 1.15837 0.78083 0.83612 0.81193 1.90852 1.57064 1.20618 1.82634 1.47231 1.68571 1.11602 1.08477 1.21436 0.95508 1.00896 0.80552 1.20346 0.94653 0.94279 1.00732 1.19634 0.96936 0.98402 1.03118 1.17987 0.90483 0.92810 0.91276 1.19757 1.28939 0.94798 1.08507 0.90947 1.26632 0.95781 0.96346 0.99219 1.69865 1.34285 1.12429 1.29577 0.85255 0.78152 0.79189 0.77727 1.18459 1.19257 1.19232 1.21249 1.01252 0.98109 1.00068 1.20899 0.96678 0.98678 0.96987 1.20627 0.98868 0.98251 1.06307 1.19539 0.96488 0.95270 0.97215 1.20431 0.93947 0.81039 1.00042 1.22787 0.97846 1.01116 0.95995 1.23136 0.90003 1.01053 0.94734 1.65355 1.17983 1.37695 1.03245 1.22592 1.02680 0.95654 0.92623 0.92053 0.91035 0.92270 0.75652 0.90326 0.89586 0.94108 0.91193 0.90595 0.88648 0.87285 0.85491 0.89156 0.88156 0.92042 0.91039 0.89060 0.93052 0.94844 0.90339 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 9.31 71.98 0.67 -1.28 16 2 C 0.06 1.00 2.59 45.06 0.12 1.12 16 3 H 0.07 0.99 7.57 -2.38 -0.02 0.97 16 4 C 0.16 3.64 2.97 45.89 0.14 3.78 16 5 H 0.08 2.19 7.25 -2.39 -0.02 2.17 16 6 N -0.73 -17.65 4.94 -453.52 -2.24 -19.89 16 7 C 0.71 23.06 8.32 179.05 1.49 24.55 16 8 O -0.63 -24.95 15.48 -4.00 -0.06 -25.01 16 9 N -0.62 -20.06 2.94 -842.02 -2.47 -22.53 16 10 C 0.14 4.84 6.45 86.17 0.56 5.39 16 11 C -0.06 -2.56 4.96 29.74 0.15 -2.41 16 12 C -0.18 -8.17 5.82 -19.40 -0.11 -8.29 16 13 C 0.08 4.00 5.55 -21.19 -0.12 3.88 16 14 C -0.49 -25.92 7.94 23.46 0.19 -25.73 16 15 H 0.07 3.76 6.97 -2.91 -0.02 3.74 16 16 C 0.03 1.68 5.25 85.26 0.45 2.13 16 17 N -0.83 -43.70 10.87 21.83 0.24 -43.47 16 18 Si 0.97 38.88 29.57 68.60 2.03 40.91 16 19 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 20 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 21 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 22 C -0.19 -9.63 8.62 22.66 0.20 -9.44 16 23 C -0.11 -4.99 10.03 22.15 0.22 -4.76 16 24 C -0.22 -8.44 9.63 22.55 0.22 -8.22 16 25 C -0.08 -3.27 5.82 -19.84 -0.12 -3.38 16 26 C 0.17 4.82 6.16 85.65 0.53 5.35 16 27 C -0.14 -3.07 6.80 31.57 0.21 -2.86 16 28 C 0.04 0.66 6.50 86.53 0.56 1.23 16 29 N -0.52 -8.49 5.35 -882.18 -4.72 -13.20 16 30 C 0.01 0.15 9.45 127.69 1.21 1.36 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.84 7.54 -2.39 -0.02 0.82 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.41 7.90 5.95 -92.71 -0.55 7.34 16 35 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.09 3.02 7.07 -2.39 -0.02 3.00 16 37 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 3.00 7.09 -2.38 -0.02 2.98 16 39 H 0.28 13.54 8.30 -92.71 -0.77 12.77 16 40 H 0.10 5.25 6.27 -2.91 -0.02 5.23 16 41 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 42 H 0.13 3.81 8.05 -2.91 -0.02 3.79 16 43 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.10 2.26 5.81 -2.39 -0.01 2.25 16 45 H 0.06 1.56 7.95 -2.39 -0.02 1.54 16 46 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 47 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.05 0.83 7.90 -2.38 -0.02 0.81 16 49 H 0.03 0.38 7.97 -2.39 -0.02 0.36 16 50 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.08 0.80 7.48 -2.39 -0.02 0.79 16 Total: -1.00 -64.25 395.00 -0.29 -64.54 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: 0.38 Total: 36.25 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 6.55 Total: -17.59 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -9.19 Total: -99.09 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.06 Total: -25.01 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -64.25 -0.29 -64.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925345427.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.188 kcal (2) G-P(sol) polarization free energy of solvation -64.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds