Wall clock time and date at job start Wed Apr 1 2020 03:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.50129 * 2 1 4 4 C 1.53188 * 109.52461 * 239.91509 * 2 1 3 5 5 N 1.46930 * 108.77335 * 185.39999 * 4 2 1 6 6 C 1.36944 * 120.62667 * 233.58904 * 5 4 2 7 7 H 1.07999 * 120.00134 * 27.68286 * 6 5 4 8 8 C 1.38815 * 119.99554 * 207.68742 * 6 5 4 9 9 N 1.31617 * 120.00057 * 17.36230 * 8 6 5 10 10 Si 1.86804 * 119.99704 * 197.36563 * 8 6 5 11 11 H 1.48499 * 109.46901 * 59.99825 * 10 8 6 12 12 H 1.48502 * 109.46899 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.46954 * 300.00028 * 10 8 6 14 14 C 1.46918 * 118.74168 * 53.60909 * 5 4 2 15 15 C 1.53172 * 108.76905 * 306.38901 * 14 5 4 16 16 C 1.53040 * 109.32272 * 54.64513 * 15 14 5 17 17 H 1.08994 * 109.46238 * 58.64491 * 16 15 14 18 18 N 1.46503 * 109.45586 * 178.61651 * 16 15 14 19 19 C 1.34776 * 120.00095 * 275.02255 * 18 16 15 20 20 O 1.21521 * 119.99761 * 0.02562 * 19 18 16 21 21 C 1.48167 * 120.00434 * 180.02562 * 19 18 16 22 22 C 1.39178 * 119.82174 * 179.73064 * 21 19 18 23 23 C 1.39003 * 119.24445 * 179.68108 * 22 21 19 24 24 C 1.37865 * 118.56204 * 0.33174 * 23 22 21 25 25 C 1.39121 * 119.07113 * 0.09479 * 24 23 22 26 26 N 1.31317 * 121.19988 * 359.70729 * 25 24 23 27 27 C 1.50500 * 122.47549 * 180.43339 * 24 23 22 28 28 C 1.52781 * 110.48972 * 342.03501 * 27 24 23 29 29 C 1.53304 * 108.53129 * 51.12303 * 28 27 24 30 30 C 1.50351 * 118.61651 * 179.79234 * 23 22 21 31 31 H 1.09001 * 109.47403 * 299.93766 * 1 2 3 32 32 H 1.08997 * 109.46932 * 59.93522 * 1 2 3 33 33 H 1.08998 * 109.47374 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.58564 * 305.18059 * 4 2 1 35 35 H 1.08996 * 109.58640 * 65.61235 * 4 2 1 36 36 H 0.97000 * 119.99729 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.59219 * 66.17718 * 14 5 4 38 38 H 1.09005 * 109.58957 * 186.60598 * 14 5 4 39 39 H 1.08997 * 109.49803 * 294.68077 * 15 14 5 40 40 H 1.08996 * 109.47930 * 174.58960 * 15 14 5 41 41 H 0.96997 * 119.99882 * 95.02829 * 18 16 15 42 42 H 1.07998 * 120.37550 * 359.95417 * 22 21 19 43 43 H 1.08005 * 119.39914 * 179.72920 * 25 24 23 44 44 H 1.09000 * 109.30054 * 102.34854 * 27 24 23 45 45 H 1.09000 * 109.30135 * 221.72157 * 27 24 23 46 46 H 1.09002 * 109.62895 * 291.40545 * 28 27 24 47 47 H 1.09004 * 109.62736 * 170.83569 * 28 27 24 48 48 H 1.09005 * 109.63998 * 170.53203 * 29 28 27 49 49 H 1.09000 * 109.64107 * 49.91774 * 29 28 27 50 50 H 1.09001 * 109.30675 * 283.03508 * 30 23 22 51 51 H 1.09000 * 109.30819 * 42.62841 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0419 -0.7237 -1.2493 5 7 3.5053 -0.8284 -1.1688 6 6 4.2944 -0.3783 -2.1936 7 1 3.9473 0.4212 -2.8313 8 6 5.5403 -0.9498 -2.4126 9 7 5.8295 -2.1202 -1.8846 10 14 6.8065 -0.0575 -3.4567 11 1 7.1181 1.2573 -2.8408 12 1 8.0454 -0.8725 -3.5362 13 1 6.2628 0.1520 -4.8226 14 6 4.1059 -1.4255 0.0317 15 6 3.5708 -0.6938 1.2665 16 6 2.0407 -0.7227 1.2487 17 1 1.6971 -1.7570 1.2357 18 7 1.5261 -0.0524 2.4454 19 6 1.3974 -0.7375 3.5988 20 8 1.7088 -1.9112 3.6463 21 6 0.8764 -0.0598 4.8090 22 6 0.7398 -0.7724 5.9967 23 6 0.2561 -0.1231 7.1265 24 6 -0.0795 1.2104 7.0273 25 6 0.0746 1.8572 5.8053 26 7 0.5374 1.2222 4.7531 27 6 -0.6021 2.0013 8.1963 28 6 -1.1086 1.0648 9.2920 29 6 -0.0146 0.0351 9.5970 30 6 0.1098 -0.9076 8.4007 31 1 -0.3634 0.5129 0.8905 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6064 -1.7217 -1.2976 35 1 1.7644 -0.1581 -2.1387 36 1 6.7003 -2.5193 -2.0374 37 1 3.8386 -2.4807 0.0879 38 1 5.1902 -1.3229 -0.0124 39 1 3.9154 0.3401 1.2544 40 1 3.9335 -1.1883 2.1676 41 1 1.2779 0.8845 2.4075 42 1 1.0108 -1.8169 6.0411 43 1 -0.1909 2.9007 5.7204 44 1 0.1979 2.6243 8.5962 45 1 -1.4195 2.6405 7.8623 46 1 -2.0079 0.5530 8.9494 47 1 -1.3312 1.6397 10.1909 48 1 -0.2854 -0.5347 10.4859 49 1 0.9341 0.5462 9.7609 50 1 -0.7819 -1.5315 8.3394 51 1 0.9853 -1.5426 8.5355 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942390941.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:18 Heat of formation + Delta-G solvation = -4.487817 kcal Electronic energy + Delta-G solvation = -29986.316088 eV Core-core repulsion = 26077.730753 eV Total energy + Delta-G solvation = -3908.585335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.12582 -39.52732 -37.69668 -36.97328 -34.51391 -33.16882 -32.66223 -31.57253 -31.10735 -30.06818 -29.43465 -25.90102 -25.48326 -24.47497 -24.02264 -23.03432 -22.21108 -21.02652 -20.79104 -19.76827 -19.15876 -17.72849 -16.97968 -16.55905 -16.01341 -15.50850 -15.50252 -15.07912 -14.84349 -14.71402 -14.35622 -14.13441 -13.89742 -13.79130 -13.54572 -13.32940 -13.20060 -13.02844 -12.74890 -12.62643 -12.55724 -12.39459 -12.02013 -11.43033 -11.42166 -11.38914 -11.25844 -11.02480 -11.02340 -10.76808 -10.62014 -10.30608 -10.22308 -10.14782 -9.92475 -9.73626 -9.71554 -9.67481 -9.38404 -9.18033 -8.61406 -8.36903 -6.64861 -5.74811 -3.17233 0.48456 0.95691 2.76249 3.28009 3.41385 3.47051 3.48186 3.74939 4.01865 4.17779 4.19089 4.40091 4.48176 4.52517 4.53849 4.80487 4.89744 5.00120 5.03268 5.18177 5.18542 5.29676 5.36089 5.36751 5.45124 5.45512 5.48622 5.52105 5.58094 5.63615 5.66241 5.77519 5.81687 5.95523 6.01103 6.05610 6.17135 6.30806 6.34307 6.37675 6.44790 6.51899 6.66339 6.72428 6.83101 6.98377 7.01502 7.41994 7.49739 7.71611 7.82947 7.85504 8.40999 8.48635 9.24581 9.88159 10.44842 11.33693 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023141 B = 0.002146 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.698483 B =13043.033520 C =13314.878513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 H 0.072 0.928 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.254 4.254 7 H 0.065 0.935 8 C 0.002 3.998 9 N -0.901 5.901 10 Si 0.902 3.098 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.174 3.826 15 C -0.147 4.147 16 C 0.155 3.845 17 H 0.083 0.917 18 N -0.699 5.699 19 C 0.565 3.435 20 O -0.535 6.535 21 C 0.079 3.921 22 C -0.112 4.112 23 C -0.043 4.043 24 C -0.114 4.114 25 C 0.101 3.899 26 N -0.459 5.459 27 C -0.079 4.079 28 C -0.121 4.121 29 C -0.121 4.121 30 C -0.085 4.085 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.020 0.980 35 H 0.058 0.942 36 H 0.254 0.746 37 H 0.021 0.979 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.405 0.595 42 H 0.147 0.853 43 H 0.160 0.840 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.084 0.916 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.578 7.897 23.300 29.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 H 0.090 0.910 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.383 4.383 7 H 0.083 0.917 8 C -0.197 4.197 9 N -0.546 5.546 10 Si 0.732 3.268 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.209 1.209 14 C 0.048 3.952 15 C -0.188 4.188 16 C 0.052 3.948 17 H 0.101 0.899 18 N -0.349 5.349 19 C 0.349 3.651 20 O -0.412 6.412 21 C -0.058 4.058 22 C -0.133 4.133 23 C -0.050 4.050 24 C -0.116 4.116 25 C -0.061 4.061 26 N -0.170 5.170 27 C -0.116 4.116 28 C -0.159 4.159 29 C -0.158 4.158 30 C -0.121 4.121 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.039 0.961 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.240 0.760 42 H 0.165 0.835 43 H 0.177 0.823 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.086 0.914 50 H 0.102 0.898 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.055 7.336 22.418 27.982 hybrid contribution 0.530 0.490 0.233 0.759 sum -14.525 7.826 22.651 28.023 Atomic orbital electron populations 1.21774 0.95789 1.01523 1.00944 1.21967 0.94551 1.00658 0.96334 0.90986 1.20893 0.85936 0.96611 0.93750 1.44098 0.99300 1.71468 1.16605 1.19131 0.98228 1.12351 1.08599 0.91681 1.25047 0.99925 0.95371 0.99327 1.70030 1.21943 1.14574 1.48003 0.86372 0.81101 0.79116 0.80191 1.21075 1.21667 1.20894 1.20762 0.99440 0.93088 0.81959 1.22581 0.93780 1.01623 1.00786 1.21134 0.94646 0.96873 0.82137 0.89926 1.46145 1.63979 1.14896 1.09832 1.17851 0.78488 0.86039 0.82692 1.90792 1.50534 1.15486 1.84376 1.21249 0.99500 0.90470 0.94536 1.22148 0.97527 1.01931 0.91657 1.19872 0.96080 0.93454 0.95643 1.20741 0.99650 0.94275 0.96907 1.22812 0.95758 1.00017 0.87495 1.67507 1.09316 1.08598 1.31530 1.20434 1.00933 0.97308 0.92933 1.21571 0.98579 0.97389 0.98337 1.21581 0.99549 0.97318 0.97380 1.20507 1.03320 0.97496 0.90818 0.93324 0.92728 0.92964 0.96170 0.92355 0.93555 0.96119 0.89204 0.92580 0.92812 0.75954 0.83477 0.82266 0.90020 0.90119 0.91446 0.91062 0.90995 0.91383 0.89789 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.03 37.16 0.34 -1.71 16 2 C -0.11 -1.99 2.46 -90.50 -0.22 -2.21 16 3 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.16 3.27 5.80 -3.71 -0.02 3.25 16 5 N -0.59 -15.05 2.99 -172.34 -0.52 -15.57 16 6 C -0.25 -7.01 9.59 -15.05 -0.14 -7.15 16 7 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 8 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 9 N -0.90 -26.62 11.19 55.49 0.62 -26.00 16 10 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.17 4.33 5.31 -3.73 -0.02 4.31 16 15 C -0.15 -3.07 5.65 -26.62 -0.15 -3.22 16 16 C 0.16 2.86 1.88 -67.88 -0.13 2.73 16 17 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 18 N -0.70 -11.22 4.35 -54.60 -0.24 -11.45 16 19 C 0.57 9.46 7.78 -12.18 -0.09 9.37 16 20 O -0.54 -10.56 15.99 5.35 0.09 -10.47 16 21 C 0.08 1.10 6.75 -83.06 -0.56 0.54 16 22 C -0.11 -1.34 9.26 -38.95 -0.36 -1.70 16 23 C -0.04 -0.40 5.74 -104.64 -0.60 -1.00 16 24 C -0.11 -0.95 5.75 -104.53 -0.60 -1.55 16 25 C 0.10 0.96 10.79 -17.44 -0.19 0.77 16 26 N -0.46 -5.73 9.55 -9.73 -0.09 -5.82 16 27 C -0.08 -0.42 5.71 -28.09 -0.16 -0.58 16 28 C -0.12 -0.56 5.97 -26.69 -0.16 -0.72 16 29 C -0.12 -0.61 5.98 -26.67 -0.16 -0.77 16 30 C -0.08 -0.56 5.71 -28.15 -0.16 -0.72 16 31 H 0.05 0.64 7.36 -51.93 -0.38 0.26 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 36 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 2.49 6.04 -51.93 -0.31 2.17 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.41 5.84 7.64 -40.82 -0.31 5.53 16 42 H 0.15 1.74 7.64 -52.49 -0.40 1.34 16 43 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.33 8.13 -51.93 -0.42 -0.09 16 46 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 47 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 50 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 399.51 15.07 6.02 6.02 Total: -1.00 -32.24 399.51 -11.15 -43.39 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -8.52 Total: 3.40 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -3.48 Total: -0.41 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.23 Total: -58.84 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.24 -11.15 -43.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942390941.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.905 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds