Wall clock time and date at job start Wed Apr 1 2020 03:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.52699 * 2 1 4 4 C 1.53192 * 109.49637 * 239.91495 * 2 1 3 5 5 N 1.46927 * 108.77247 * 185.41331 * 4 2 1 6 6 C 1.36941 * 120.63080 * 233.58594 * 5 4 2 7 7 H 1.08007 * 119.99962 * 27.68943 * 6 5 4 8 8 C 1.38809 * 120.00327 * 207.68945 * 6 5 4 9 9 N 1.31619 * 119.99594 * 17.37163 * 8 6 5 10 10 Si 1.86795 * 120.00175 * 197.36782 * 8 6 5 11 11 H 1.48504 * 109.47187 * 89.99719 * 10 8 6 12 12 H 1.48494 * 109.47577 * 209.99952 * 10 8 6 13 13 H 1.48504 * 109.47137 * 330.00331 * 10 8 6 14 14 C 1.46920 * 118.74226 * 53.61418 * 5 4 2 15 15 C 1.53166 * 108.76735 * 306.38691 * 14 5 4 16 16 C 1.53043 * 109.32676 * 54.64328 * 15 14 5 17 17 H 1.08993 * 109.46364 * 178.61114 * 16 15 14 18 18 N 1.46503 * 109.45808 * 58.64091 * 16 15 14 19 19 C 1.34776 * 119.99710 * 84.97808 * 18 16 15 20 20 O 1.21596 * 120.00117 * 359.97438 * 19 18 16 21 21 C 1.47525 * 119.99846 * 179.97438 * 19 18 16 22 22 C 1.39816 * 120.20985 * 359.97438 * 21 19 18 23 23 C 1.37393 * 120.11826 * 179.84517 * 22 21 19 24 24 C 1.39756 * 120.39521 * 359.97438 * 23 22 21 25 25 C 1.39305 * 119.30085 * 0.26765 * 24 23 22 26 26 C 1.37428 * 120.64646 * 359.59623 * 25 24 23 27 27 C 1.51617 * 107.88363 * 179.58051 * 25 24 23 28 28 C 1.54607 * 102.73346 * 344.05758 * 27 25 24 29 29 N 1.39468 * 129.74140 * 180.75794 * 24 23 22 30 30 C 1.46895 * 110.99876 * 76.13312 * 29 24 23 31 31 H 1.09010 * 109.46973 * 299.92073 * 1 2 3 32 32 H 1.08993 * 109.47495 * 59.91696 * 1 2 3 33 33 H 1.09002 * 109.47264 * 179.97438 * 1 2 3 34 34 H 1.08990 * 109.58691 * 305.20356 * 4 2 1 35 35 H 1.09005 * 109.58224 * 65.62910 * 4 2 1 36 36 H 0.97005 * 119.99349 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.58817 * 66.17100 * 14 5 4 38 38 H 1.08995 * 109.59294 * 186.60107 * 14 5 4 39 39 H 1.08996 * 109.49924 * 294.68244 * 15 14 5 40 40 H 1.08994 * 109.47730 * 174.59078 * 15 14 5 41 41 H 0.97004 * 120.00390 * 264.97142 * 18 16 15 42 42 H 1.07993 * 119.94176 * 359.81936 * 22 21 19 43 43 H 1.08007 * 119.80164 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.01872 * 180.25370 * 26 25 24 45 45 H 1.08994 * 110.76082 * 102.36926 * 27 25 24 46 46 H 1.08992 * 110.75487 * 225.74982 * 27 25 24 47 47 H 1.09001 * 110.77918 * 143.83617 * 28 27 25 48 48 H 1.09006 * 110.77471 * 267.26693 * 28 27 25 49 49 H 1.09001 * 109.47148 * 60.12686 * 30 29 24 50 50 H 1.08997 * 109.47302 * 180.12136 * 30 29 24 51 51 H 1.08997 * 109.47457 * 300.12929 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5046 -0.8292 -1.1695 6 6 4.2936 -0.3794 -2.1944 7 1 3.9467 0.4204 -2.8320 8 6 5.5391 -0.9514 -2.4139 9 7 5.8279 -2.1221 -1.8862 10 14 6.8054 -0.0597 -3.4583 11 1 7.6354 0.8145 -2.5910 12 1 7.6755 -1.0532 -4.1371 13 1 6.1119 0.7689 -4.4771 14 6 4.1053 -1.4267 0.0308 15 6 3.5709 -0.6950 1.2657 16 6 2.0408 -0.7231 1.2484 17 1 1.6583 -0.2244 2.1389 18 7 1.5783 -2.1131 1.2309 19 6 1.4496 -2.7950 2.3862 20 8 1.7178 -2.2568 3.4431 21 6 0.9834 -4.1946 2.3686 22 6 0.6733 -4.8176 1.1560 23 6 0.2423 -6.1221 1.1415 24 6 0.1107 -6.8366 2.3354 25 6 0.4158 -6.2104 3.5418 26 6 0.8502 -4.9068 3.5643 27 6 0.1746 -7.2077 4.6581 28 6 -0.6797 -8.2944 3.9655 29 7 -0.2906 -8.1557 2.5455 30 6 0.7852 -9.0945 2.2004 31 1 -0.3633 0.5127 0.8908 32 1 -0.3634 0.5151 -0.8892 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6052 -1.7216 -1.2979 35 1 1.7637 -0.1580 -2.1389 36 1 6.6985 -2.5216 -2.0394 37 1 3.8375 -2.4819 0.0868 38 1 5.1895 -1.3247 -0.0137 39 1 3.9159 0.3388 1.2537 40 1 3.9336 -1.1898 2.1666 41 1 1.3647 -2.5426 0.3878 42 1 0.7724 -4.2724 0.2291 43 1 0.0038 -6.5983 0.2019 44 1 1.0878 -4.4326 4.5051 45 1 1.1166 -7.6252 5.0134 46 1 -0.3775 -6.7456 5.4763 47 1 -0.4242 -9.2851 4.3414 48 1 -1.7428 -8.0922 4.0965 49 1 1.6569 -8.8929 2.8229 50 1 0.4450 -10.1158 2.3715 51 1 1.0521 -8.9714 1.1508 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944016984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:30 Heat of formation + Delta-G solvation = 26.635162 kcal Electronic energy + Delta-G solvation = -30734.753781 eV Core-core repulsion = 26827.518039 eV Total energy + Delta-G solvation = -3907.235741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.08253 -39.82100 -37.81285 -36.44959 -34.27405 -32.81007 -32.37972 -31.17814 -30.53590 -29.76312 -28.99118 -26.35410 -25.85755 -25.26605 -23.69821 -22.47721 -21.94587 -21.21479 -21.07100 -20.12385 -18.57057 -17.63429 -16.75279 -16.73430 -16.10034 -15.64780 -15.34849 -14.94744 -14.74526 -14.25152 -14.19137 -14.05809 -13.77472 -13.72109 -13.50341 -13.34160 -13.20862 -12.92459 -12.86604 -12.63538 -12.42409 -12.32277 -12.07922 -11.97463 -11.51344 -11.45266 -11.36582 -11.08180 -11.03385 -10.80606 -10.71600 -10.34228 -10.21112 -10.05106 -9.74354 -9.67294 -9.63553 -9.41849 -8.99533 -8.59929 -8.46721 -8.11557 -6.69774 -5.80527 -3.23449 0.76051 1.26234 2.92413 3.33943 3.36956 3.44190 3.44788 3.51137 3.86165 4.29559 4.47466 4.50143 4.64963 4.77326 4.90143 4.97236 5.07513 5.13543 5.18148 5.23759 5.28705 5.31539 5.37180 5.38851 5.49740 5.50781 5.59293 5.61987 5.64703 5.84958 5.92010 5.99036 6.08919 6.10268 6.14664 6.16875 6.27490 6.29171 6.36609 6.44181 6.46197 6.60096 6.65397 6.66377 6.77310 6.89381 6.97793 7.02769 7.37056 7.66756 7.78299 7.87559 8.42459 8.53124 9.18879 9.82217 10.38151 11.27313 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.002840 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.904451 B = 9857.727947 C =10848.836606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 H 0.082 0.918 4 C 0.152 3.848 5 N -0.591 5.591 6 C -0.254 4.254 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.900 5.900 10 Si 0.902 3.098 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.174 3.826 15 C -0.155 4.155 16 C 0.161 3.839 17 H 0.074 0.926 18 N -0.704 5.704 19 C 0.559 3.441 20 O -0.549 6.549 21 C -0.139 4.139 22 C -0.065 4.065 23 C -0.117 4.117 24 C 0.109 3.891 25 C -0.153 4.153 26 C -0.029 4.029 27 C -0.108 4.108 28 C 0.049 3.951 29 N -0.498 5.498 30 C 0.026 3.974 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.012 0.988 35 H 0.057 0.943 36 H 0.253 0.747 37 H 0.018 0.982 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.400 0.600 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.036 0.964 50 H 0.075 0.925 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.717 -10.740 10.035 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 H 0.100 0.900 4 C 0.025 3.975 5 N -0.314 5.314 6 C -0.383 4.383 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.545 5.545 10 Si 0.732 3.268 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.049 3.951 15 C -0.195 4.195 16 C 0.057 3.943 17 H 0.092 0.908 18 N -0.356 5.356 19 C 0.346 3.654 20 O -0.428 6.428 21 C -0.143 4.143 22 C -0.084 4.084 23 C -0.137 4.137 24 C 0.012 3.988 25 C -0.156 4.156 26 C -0.049 4.049 27 C -0.146 4.146 28 C -0.078 4.078 29 N -0.215 5.215 30 C -0.120 4.120 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.237 0.763 42 H 0.151 0.849 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.104 0.896 48 H 0.109 0.891 49 H 0.054 0.946 50 H 0.094 0.906 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.781 -10.636 10.380 20.268 hybrid contribution 1.306 0.324 -0.507 1.438 sum -12.475 -10.312 9.874 18.959 Atomic orbital electron populations 1.21768 0.95739 1.01355 1.01118 1.21957 0.94579 1.00782 0.96703 0.89951 1.20904 0.86117 0.96023 0.94424 1.44074 0.99128 1.71555 1.16595 1.19178 0.98262 1.12347 1.08561 0.91655 1.25026 0.99878 0.95353 0.99276 1.70041 1.21834 1.14553 1.48024 0.86299 0.81694 0.78914 0.79895 1.21462 1.21818 1.20457 1.20719 0.99289 0.92930 0.82197 1.22566 0.94229 1.01919 1.00763 1.20909 0.95089 0.80379 0.97948 0.90829 1.46031 1.66657 1.14334 1.08563 1.18041 0.77655 0.85516 0.84160 1.90739 1.51402 1.69978 1.30705 1.19910 1.05642 0.94839 0.93881 1.21143 0.95609 0.94283 0.97350 1.20388 1.02746 0.93846 0.96679 1.19697 0.95047 0.90095 0.93935 1.20874 1.03381 0.95627 0.95688 1.20409 0.94588 0.91743 0.98121 1.21669 1.00991 0.94889 0.97076 1.23201 1.00520 0.99013 0.85038 1.59926 1.37057 1.02616 1.21935 1.22500 0.91810 0.95548 1.02096 0.93257 0.92718 0.93082 0.97033 0.92446 0.93661 0.96387 0.89598 0.91771 0.92687 0.76319 0.84923 0.85172 0.84835 0.90006 0.89356 0.89580 0.89141 0.94550 0.90602 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.05 37.16 0.34 -1.55 16 2 C -0.12 -1.95 2.67 -90.50 -0.24 -2.20 16 3 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 4 C 0.15 2.94 5.50 -3.71 -0.02 2.92 16 5 N -0.59 -14.14 2.99 -172.34 -0.52 -14.66 16 6 C -0.25 -6.77 9.59 -15.06 -0.14 -6.91 16 7 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 8 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 9 N -0.90 -25.73 11.19 55.49 0.62 -25.11 16 10 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.17 4.11 5.05 -3.73 -0.02 4.09 16 15 C -0.15 -3.10 5.77 -26.62 -0.15 -3.25 16 16 C 0.16 2.80 2.21 -67.88 -0.15 2.65 16 17 H 0.07 1.30 7.57 -51.93 -0.39 0.91 16 18 N -0.70 -11.50 3.55 -54.80 -0.19 -11.70 16 19 C 0.56 9.51 7.73 -12.47 -0.10 9.42 16 20 O -0.55 -10.88 16.01 5.28 0.08 -10.79 16 21 C -0.14 -2.03 5.88 -104.94 -0.62 -2.65 16 22 C -0.06 -0.83 9.52 -39.30 -0.37 -1.20 16 23 C -0.12 -1.38 10.05 -39.32 -0.40 -1.77 16 24 C 0.11 1.27 5.57 -83.42 -0.46 0.81 16 25 C -0.15 -1.80 6.21 -104.07 -0.65 -2.45 16 26 C -0.03 -0.40 9.58 -39.29 -0.38 -0.77 16 27 C -0.11 -0.92 6.98 -26.59 -0.19 -1.10 16 28 C 0.05 0.37 7.00 -2.44 -0.02 0.36 16 29 N -0.50 -4.90 5.31 -176.83 -0.94 -5.84 16 30 C 0.03 0.21 9.28 60.06 0.56 0.77 16 31 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.65 7.53 -51.93 -0.39 0.26 16 34 H 0.01 0.22 6.64 -51.93 -0.34 -0.12 16 35 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 36 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.02 0.45 7.74 -51.93 -0.40 0.04 16 38 H 0.09 2.32 6.04 -51.93 -0.31 2.00 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.40 6.16 4.76 -40.82 -0.19 5.96 16 42 H 0.13 1.56 6.40 -52.49 -0.34 1.22 16 43 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 44 H 0.13 1.81 7.65 -52.49 -0.40 1.41 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.47 7.76 -51.93 -0.40 0.07 16 48 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 51 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -31.29 396.31 -11.31 -42.60 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -8.21 Total: 5.92 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -3.09 Total: -2.85 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -1.03 Total: -57.31 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.29 -11.31 -42.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944016984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.236 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds