Wall clock time and date at job start Wed Apr 1 2020 03:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.52699 * 2 1 4 4 C 1.53192 * 109.49637 * 239.91495 * 2 1 3 5 5 N 1.46927 * 108.77247 * 185.41331 * 4 2 1 6 6 C 1.36941 * 120.63080 * 233.58594 * 5 4 2 7 7 H 1.08007 * 119.99962 * 27.68943 * 6 5 4 8 8 C 1.38809 * 120.00327 * 207.68945 * 6 5 4 9 9 N 1.31619 * 119.99594 * 17.37163 * 8 6 5 10 10 Si 1.86795 * 120.00175 * 197.36782 * 8 6 5 11 11 H 1.48504 * 109.47187 * 89.99719 * 10 8 6 12 12 H 1.48494 * 109.47577 * 209.99952 * 10 8 6 13 13 H 1.48504 * 109.47137 * 330.00331 * 10 8 6 14 14 C 1.46920 * 118.74226 * 53.61418 * 5 4 2 15 15 C 1.53166 * 108.76735 * 306.38691 * 14 5 4 16 16 C 1.53043 * 109.32676 * 54.64328 * 15 14 5 17 17 H 1.08993 * 109.46364 * 178.61114 * 16 15 14 18 18 N 1.46503 * 109.45808 * 58.64091 * 16 15 14 19 19 C 1.34776 * 119.99710 * 84.97808 * 18 16 15 20 20 O 1.21596 * 120.00117 * 359.97438 * 19 18 16 21 21 C 1.47525 * 119.99846 * 179.97438 * 19 18 16 22 22 C 1.39816 * 120.20985 * 359.97438 * 21 19 18 23 23 C 1.37393 * 120.11826 * 179.84517 * 22 21 19 24 24 C 1.39756 * 120.39521 * 359.97438 * 23 22 21 25 25 C 1.39305 * 119.30085 * 0.26765 * 24 23 22 26 26 C 1.37428 * 120.64646 * 359.59623 * 25 24 23 27 27 C 1.51617 * 107.88363 * 179.58051 * 25 24 23 28 28 C 1.54607 * 102.73346 * 344.05758 * 27 25 24 29 29 N 1.39468 * 129.74140 * 180.75794 * 24 23 22 30 30 C 1.46895 * 110.99876 * 76.13312 * 29 24 23 31 31 H 1.09010 * 109.46973 * 299.92073 * 1 2 3 32 32 H 1.08993 * 109.47495 * 59.91696 * 1 2 3 33 33 H 1.09002 * 109.47264 * 179.97438 * 1 2 3 34 34 H 1.08990 * 109.58691 * 305.20356 * 4 2 1 35 35 H 1.09005 * 109.58224 * 65.62910 * 4 2 1 36 36 H 0.97005 * 119.99349 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.58817 * 66.17100 * 14 5 4 38 38 H 1.08995 * 109.59294 * 186.60107 * 14 5 4 39 39 H 1.08996 * 109.49924 * 294.68244 * 15 14 5 40 40 H 1.08994 * 109.47730 * 174.59078 * 15 14 5 41 41 H 0.97004 * 120.00390 * 264.97142 * 18 16 15 42 42 H 1.07993 * 119.94176 * 359.81936 * 22 21 19 43 43 H 1.08007 * 119.80164 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.01872 * 180.25370 * 26 25 24 45 45 H 1.08994 * 110.76082 * 102.36926 * 27 25 24 46 46 H 1.08992 * 110.75487 * 225.74982 * 27 25 24 47 47 H 1.09001 * 110.77918 * 143.83617 * 28 27 25 48 48 H 1.09006 * 110.77471 * 267.26693 * 28 27 25 49 49 H 1.09001 * 109.47148 * 60.12686 * 30 29 24 50 50 H 1.08997 * 109.47302 * 180.12136 * 30 29 24 51 51 H 1.08997 * 109.47457 * 300.12929 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5046 -0.8292 -1.1695 6 6 4.2936 -0.3794 -2.1944 7 1 3.9467 0.4204 -2.8320 8 6 5.5391 -0.9514 -2.4139 9 7 5.8279 -2.1221 -1.8862 10 14 6.8054 -0.0597 -3.4583 11 1 7.6354 0.8145 -2.5910 12 1 7.6755 -1.0532 -4.1371 13 1 6.1119 0.7689 -4.4771 14 6 4.1053 -1.4267 0.0308 15 6 3.5709 -0.6950 1.2657 16 6 2.0408 -0.7231 1.2484 17 1 1.6583 -0.2244 2.1389 18 7 1.5783 -2.1131 1.2309 19 6 1.4496 -2.7950 2.3862 20 8 1.7178 -2.2568 3.4431 21 6 0.9834 -4.1946 2.3686 22 6 0.6733 -4.8176 1.1560 23 6 0.2423 -6.1221 1.1415 24 6 0.1107 -6.8366 2.3354 25 6 0.4158 -6.2104 3.5418 26 6 0.8502 -4.9068 3.5643 27 6 0.1746 -7.2077 4.6581 28 6 -0.6797 -8.2944 3.9655 29 7 -0.2906 -8.1557 2.5455 30 6 0.7852 -9.0945 2.2004 31 1 -0.3633 0.5127 0.8908 32 1 -0.3634 0.5151 -0.8892 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6052 -1.7216 -1.2979 35 1 1.7637 -0.1580 -2.1389 36 1 6.6985 -2.5216 -2.0394 37 1 3.8375 -2.4819 0.0868 38 1 5.1895 -1.3247 -0.0137 39 1 3.9159 0.3388 1.2537 40 1 3.9336 -1.1898 2.1666 41 1 1.3647 -2.5426 0.3878 42 1 0.7724 -4.2724 0.2291 43 1 0.0038 -6.5983 0.2019 44 1 1.0878 -4.4326 4.5051 45 1 1.1166 -7.6252 5.0134 46 1 -0.3775 -6.7456 5.4763 47 1 -0.4242 -9.2851 4.3414 48 1 -1.7428 -8.0922 4.0965 49 1 1.6569 -8.8929 2.8229 50 1 0.4450 -10.1158 2.3715 51 1 1.0521 -8.9714 1.1508 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944016984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:28 Heat of formation + Delta-G solvation = 8.874052 kcal Electronic energy + Delta-G solvation = -30735.523960 eV Core-core repulsion = 26827.518039 eV Total energy + Delta-G solvation = -3908.005921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.99679 -41.12850 -39.25422 -37.48366 -36.01528 -34.09218 -33.38761 -32.89482 -32.04230 -30.90059 -29.90642 -27.40321 -27.27025 -26.79564 -24.79489 -23.65248 -23.39286 -22.70052 -22.01097 -21.30866 -20.11278 -18.90439 -18.50959 -17.56968 -17.14867 -16.85830 -16.53743 -16.41784 -16.23451 -15.69204 -15.50919 -15.36709 -15.05125 -14.89541 -14.65203 -14.62065 -14.29605 -14.22371 -13.95643 -13.75248 -13.54351 -13.35238 -13.14650 -13.01589 -12.97624 -12.75234 -12.69828 -12.54258 -12.37611 -12.17113 -12.13740 -11.95403 -11.90287 -11.67576 -11.48299 -11.13595 -10.99552 -10.54072 -10.52806 -10.01916 -9.94341 -8.98689 -8.66813 -7.86270 -5.31134 -0.27101 0.30378 1.46592 1.49067 1.56677 1.76463 2.18763 2.51539 2.60692 2.77584 3.28651 3.50508 3.63398 3.71183 3.78109 3.82727 3.97188 4.03221 4.07443 4.12480 4.17773 4.23758 4.40427 4.44259 4.48554 4.56108 4.60174 4.66012 4.72776 4.77004 4.77624 4.81527 4.92104 4.95456 4.97644 5.01734 5.06292 5.10136 5.15252 5.18792 5.26249 5.30042 5.31884 5.42645 5.49653 5.53535 5.59099 5.65832 5.73761 5.85882 6.13415 6.39047 6.54809 7.15036 7.19873 7.86565 8.37913 9.19361 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.002840 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.904451 B = 9857.727947 C =10848.836606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 H 0.079 0.921 4 C 0.149 3.851 5 N -0.606 5.606 6 C -0.259 4.259 7 H 0.070 0.930 8 C -0.050 4.050 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.290 1.290 12 H -0.297 1.297 13 H -0.266 1.266 14 C 0.189 3.811 15 C -0.144 4.144 16 C 0.167 3.833 17 H 0.077 0.923 18 N -0.699 5.699 19 C 0.558 3.442 20 O -0.583 6.583 21 C -0.162 4.162 22 C -0.065 4.065 23 C -0.122 4.122 24 C 0.111 3.889 25 C -0.160 4.160 26 C -0.040 4.040 27 C -0.106 4.106 28 C 0.050 3.950 29 N -0.506 5.506 30 C 0.025 3.975 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.022 0.978 35 H 0.061 0.939 36 H 0.248 0.752 37 H 0.000 1.000 38 H 0.047 0.953 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.405 0.595 42 H 0.140 0.860 43 H 0.147 0.853 44 H 0.126 0.874 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.112 0.888 48 H 0.096 0.904 49 H 0.032 0.968 50 H 0.100 0.900 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.735 -11.624 9.978 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 H 0.098 0.902 4 C 0.024 3.976 5 N -0.329 5.329 6 C -0.389 4.389 7 H 0.087 0.913 8 C -0.245 4.245 9 N -0.578 5.578 10 Si 0.792 3.208 11 H -0.217 1.217 12 H -0.224 1.224 13 H -0.191 1.191 14 C 0.063 3.937 15 C -0.184 4.184 16 C 0.062 3.938 17 H 0.095 0.905 18 N -0.350 5.350 19 C 0.348 3.652 20 O -0.465 6.465 21 C -0.166 4.166 22 C -0.084 4.084 23 C -0.142 4.142 24 C 0.014 3.986 25 C -0.162 4.162 26 C -0.059 4.059 27 C -0.144 4.144 28 C -0.076 4.076 29 N -0.223 5.223 30 C -0.120 4.120 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.018 0.982 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.243 0.757 42 H 0.157 0.843 43 H 0.165 0.835 44 H 0.144 0.856 45 H 0.108 0.892 46 H 0.119 0.881 47 H 0.131 0.869 48 H 0.115 0.885 49 H 0.051 0.949 50 H 0.118 0.882 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.842 -11.519 10.309 22.135 hybrid contribution 1.878 0.505 -0.468 2.001 sum -13.964 -11.014 9.841 20.326 Atomic orbital electron populations 1.21701 0.92746 1.02234 1.02479 1.21808 0.96886 0.99770 0.94221 0.90224 1.21090 0.83421 0.96978 0.96125 1.44268 1.01070 1.71514 1.16093 1.19512 0.98787 1.12026 1.08586 0.91273 1.25740 1.01712 0.96049 1.01028 1.70189 1.21795 1.16006 1.49844 0.85328 0.79291 0.77641 0.78557 1.21712 1.22389 1.19106 1.20380 0.97097 0.92421 0.83803 1.22400 0.96487 1.01066 0.98447 1.20791 0.92903 0.81290 0.98789 0.90486 1.45948 1.66351 1.13937 1.08785 1.18429 0.76836 0.86371 0.83610 1.90708 1.53081 1.70937 1.31790 1.19784 1.07851 0.93789 0.95137 1.21208 0.95449 0.94840 0.96888 1.20596 1.02424 0.93478 0.97705 1.19970 0.93734 0.91148 0.93759 1.21220 1.02415 0.95264 0.97350 1.20441 0.95298 0.92682 0.97511 1.21770 1.01835 0.94306 0.96499 1.23355 1.00666 1.00051 0.83537 1.59974 1.37263 1.01656 1.23437 1.22576 0.91345 0.96327 1.01781 0.92167 0.91114 0.92476 0.96035 0.92055 0.94338 0.98201 0.93478 0.91834 0.93624 0.75725 0.84275 0.83481 0.85609 0.89188 0.88112 0.86936 0.88537 0.94878 0.88187 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.05 71.98 0.65 -2.55 16 2 C -0.11 -3.32 2.67 -10.71 -0.03 -3.35 16 3 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 4 C 0.15 5.62 5.50 86.36 0.48 6.10 16 5 N -0.61 -29.25 2.99 -699.16 -2.09 -31.34 16 6 C -0.26 -13.87 9.59 84.03 0.81 -13.06 16 7 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 8 C -0.05 -2.75 4.91 84.86 0.42 -2.34 16 9 N -0.93 -54.88 11.19 21.65 0.24 -54.64 16 10 Si 0.96 44.73 29.59 68.60 2.03 46.76 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 13 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 14 C 0.19 9.20 5.05 86.35 0.44 9.64 16 15 C -0.14 -5.90 5.77 30.66 0.18 -5.72 16 16 C 0.17 5.75 2.21 45.02 0.10 5.85 16 17 H 0.08 2.67 7.57 -2.39 -0.02 2.65 16 18 N -0.70 -22.83 3.55 -445.56 -1.58 -24.41 16 19 C 0.56 19.35 7.73 86.69 0.67 20.02 16 20 O -0.58 -23.71 16.01 -4.02 -0.06 -23.78 16 21 C -0.16 -4.79 5.88 -20.07 -0.12 -4.91 16 22 C -0.06 -1.63 9.52 22.45 0.21 -1.42 16 23 C -0.12 -2.75 10.05 22.44 0.23 -2.53 16 24 C 0.11 2.43 5.57 38.55 0.21 2.65 16 25 C -0.16 -3.60 6.21 -19.51 -0.12 -3.72 16 26 C -0.04 -1.09 9.58 22.46 0.22 -0.87 16 27 C -0.11 -1.58 6.98 30.69 0.21 -1.37 16 28 C 0.05 0.61 7.00 86.66 0.61 1.21 16 29 N -0.51 -8.70 5.31 -713.36 -3.79 -12.49 16 30 C 0.02 0.34 9.28 127.69 1.18 1.53 16 31 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.31 7.53 -2.39 -0.02 1.29 16 34 H 0.02 0.79 6.64 -2.39 -0.02 0.77 16 35 H 0.06 2.26 7.93 -2.38 -0.02 2.24 16 36 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 37 H 0.00 0.00 7.74 -2.38 -0.02 -0.02 16 38 H 0.05 2.66 6.04 -2.39 -0.01 2.64 16 39 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.40 12.33 4.76 -92.71 -0.44 11.89 16 42 H 0.14 3.21 6.40 -2.91 -0.02 3.20 16 43 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 44 H 0.13 3.54 7.65 -2.91 -0.02 3.52 16 45 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.11 0.79 7.76 -2.39 -0.02 0.77 16 48 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 49 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.10 0.90 8.10 -2.39 -0.02 0.88 16 51 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -68.90 396.31 1.57 -67.33 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.49 Total: 27.42 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 6.34 Total: 5.15 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -7.22 Total: -122.88 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.06 Total: -23.78 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -68.90 1.57 -67.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944016984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.206 kcal (2) G-P(sol) polarization free energy of solvation -68.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds