Wall clock time and date at job start Wed Apr 1 2020 03:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.52912 * 2 1 4 4 C 1.53200 * 109.49547 * 239.91918 * 2 1 3 5 5 N 1.46924 * 108.77759 * 185.41262 * 4 2 1 6 6 C 1.36934 * 120.63276 * 233.59091 * 5 4 2 7 7 H 1.07998 * 120.00472 * 146.96664 * 6 5 4 8 8 C 1.38811 * 119.99881 * 326.96234 * 6 5 4 9 9 N 1.31620 * 119.99934 * 347.81982 * 8 6 5 10 10 Si 1.86797 * 120.00234 * 167.81889 * 8 6 5 11 11 H 1.48500 * 109.47076 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46903 * 119.99681 * 10 8 6 13 13 H 1.48500 * 109.47397 * 240.00267 * 10 8 6 14 14 C 1.46930 * 118.73862 * 53.61092 * 5 4 2 15 15 C 1.53194 * 108.76377 * 306.38062 * 14 5 4 16 16 C 1.53040 * 109.50108 * 120.08672 * 2 1 3 17 17 H 1.09000 * 109.46508 * 61.30417 * 16 2 1 18 18 N 1.46499 * 109.45633 * 301.32991 * 16 2 1 19 19 C 1.34782 * 120.00141 * 154.96846 * 18 16 2 20 20 O 1.21282 * 119.99644 * 0.02562 * 19 18 16 21 21 C 1.50697 * 120.00190 * 179.97438 * 19 18 16 22 22 N 1.46905 * 109.47151 * 186.58148 * 21 19 18 23 23 C 1.47915 * 110.99533 * 56.54360 * 22 21 19 24 24 C 1.54605 * 102.61655 * 149.18652 * 23 22 21 25 25 C 1.51573 * 102.84695 * 334.50902 * 24 23 22 26 26 C 1.37923 * 131.55629 * 196.10608 * 25 24 23 27 27 C 1.38302 * 120.07630 * 179.07227 * 26 25 24 28 28 C 1.38306 * 119.88520 * 0.55562 * 27 26 25 29 29 C 1.37910 * 120.26385 * 359.58273 * 28 27 26 30 30 C 1.38964 * 107.96098 * 15.77270 * 25 24 23 31 31 H 1.09004 * 109.46756 * 299.91480 * 1 2 3 32 32 H 1.08996 * 109.47302 * 59.91706 * 1 2 3 33 33 H 1.09004 * 109.47149 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.58371 * 305.20106 * 4 2 1 35 35 H 1.08997 * 109.58212 * 65.48710 * 4 2 1 36 36 H 0.97000 * 120.00020 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.58442 * 66.17581 * 14 5 4 38 38 H 1.08997 * 109.58698 * 186.46588 * 14 5 4 39 39 H 1.08999 * 109.51240 * 294.70281 * 15 14 5 40 40 H 1.08997 * 109.49078 * 174.59730 * 15 14 5 41 41 H 0.97000 * 120.00206 * 334.97665 * 18 16 2 42 42 H 1.09002 * 109.46709 * 66.58858 * 21 19 18 43 43 H 1.09000 * 109.47602 * 306.58506 * 21 19 18 44 44 H 1.09001 * 110.78184 * 30.90690 * 23 22 21 45 45 H 1.08998 * 110.78290 * 267.46815 * 23 22 21 46 46 H 1.09006 * 110.73080 * 216.17199 * 24 23 22 47 47 H 1.08995 * 110.89077 * 92.92457 * 24 23 22 48 48 H 1.07999 * 119.96102 * 359.37419 * 26 25 24 49 49 H 1.08001 * 120.05639 * 180.27332 * 27 26 25 50 50 H 1.08000 * 119.86379 * 179.86354 * 28 27 26 51 51 H 1.08000 * 119.89848 * 180.25688 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2497 5 7 3.5045 -0.8292 -1.1698 6 6 4.2934 -0.3793 -2.1946 7 1 5.2658 0.0404 -1.9834 8 6 3.8434 -0.4629 -3.5051 9 7 2.7788 -1.1824 -3.7907 10 14 4.7484 0.4456 -4.8633 11 1 5.9045 1.1765 -4.2848 12 1 5.2346 -0.5294 -5.8723 13 1 3.8262 1.4117 -5.5125 14 6 4.1053 -1.4268 0.0305 15 6 3.5710 -0.6948 1.2657 16 6 2.0408 -0.7232 1.2482 17 1 1.6969 -1.7574 1.2351 18 7 1.5267 -0.0530 2.4452 19 6 1.3980 -0.7385 3.5986 20 8 1.7084 -1.9100 3.6455 21 6 0.8697 -0.0490 4.8300 22 7 0.9729 -0.9557 5.9812 23 6 2.3666 -1.4126 6.1728 24 6 2.4479 -1.6162 7.7032 25 6 1.3815 -0.6743 8.2256 26 6 1.1443 -0.1704 9.4874 27 6 0.0939 0.7042 9.6983 28 6 -0.7258 1.0638 8.6439 29 6 -0.4946 0.5605 7.3809 30 6 0.5638 -0.3192 7.1596 31 1 -0.3633 0.5125 0.8908 32 1 -0.3634 0.5151 -0.8892 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6051 -1.7216 -1.2980 35 1 1.7615 -0.1592 -2.1390 36 1 2.4645 -1.2411 -4.7065 37 1 3.8374 -2.4819 0.0865 38 1 5.1897 -1.3270 -0.0152 39 1 3.9158 0.3391 1.2536 40 1 3.9337 -1.1894 2.1667 41 1 1.2787 0.8840 2.4077 42 1 -0.1743 0.2231 4.6743 43 1 1.4548 0.8503 5.0222 44 1 3.0723 -0.6487 5.8463 45 1 2.5414 -2.3517 5.6479 46 1 3.4311 -1.3323 8.0786 47 1 2.2171 -2.6473 7.9709 48 1 1.7826 -0.4553 10.3107 49 1 -0.0889 1.1020 10.6856 50 1 -1.5473 1.7450 8.8095 51 1 -1.1358 0.8485 6.5610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944995943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:58 Heat of formation + Delta-G solvation = 22.863132 kcal Electronic energy + Delta-G solvation = -30170.892491 eV Core-core repulsion = 26263.493182 eV Total energy + Delta-G solvation = -3907.399309 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.14091 -39.65695 -37.78005 -36.60878 -34.50897 -33.16285 -32.33120 -31.84677 -30.39820 -29.43530 -29.08579 -26.91741 -25.91691 -24.76962 -23.19627 -22.43365 -21.59267 -21.29101 -20.88703 -20.17547 -19.18980 -17.35186 -17.05150 -16.55387 -16.20772 -15.87719 -15.53771 -15.45434 -15.10086 -14.79461 -14.10944 -13.92027 -13.79561 -13.67708 -13.61850 -13.20650 -13.11153 -12.96725 -12.81474 -12.56194 -12.40915 -12.19195 -12.05171 -11.72457 -11.56041 -11.42134 -11.33269 -11.12723 -11.06825 -10.77832 -10.70461 -10.37406 -10.33992 -10.18193 -10.03539 -9.84462 -9.65436 -9.38191 -9.06492 -8.72387 -8.50140 -7.95741 -6.63168 -5.82171 -3.30636 1.09947 1.12679 2.69037 3.04006 3.34100 3.42142 3.44059 3.44414 3.66722 4.29114 4.42146 4.46001 4.66029 4.73321 4.80572 4.84881 5.00025 5.00248 5.15714 5.21040 5.22140 5.24986 5.31448 5.43627 5.53601 5.55045 5.63338 5.66262 5.70961 5.85024 5.85979 6.02899 6.05989 6.11286 6.18629 6.22027 6.27980 6.32951 6.44011 6.44698 6.47664 6.56226 6.63442 6.67332 6.77845 6.91743 6.96558 6.98052 7.30176 7.56998 7.68496 7.78145 8.34043 8.45466 9.19201 9.80149 10.40042 11.26466 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.027661 B = 0.002100 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.997537 B =13332.718040 C =13779.568191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 H 0.067 0.933 4 C 0.184 3.816 5 N -0.592 5.592 6 C -0.255 4.255 7 H 0.064 0.936 8 C 0.006 3.994 9 N -0.902 5.902 10 Si 0.903 3.097 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.289 1.289 14 C 0.147 3.853 15 C -0.139 4.139 16 C 0.159 3.841 17 H 0.082 0.918 18 N -0.721 5.721 19 C 0.509 3.491 20 O -0.525 6.525 21 C 0.028 3.972 22 N -0.455 5.455 23 C 0.052 3.948 24 C -0.087 4.087 25 C -0.139 4.139 26 C -0.081 4.081 27 C -0.148 4.148 28 C -0.095 4.095 29 C -0.140 4.140 30 C 0.098 3.902 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.022 0.978 35 H 0.087 0.913 36 H 0.254 0.746 37 H 0.020 0.980 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.395 0.605 42 H 0.108 0.892 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.113 0.887 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.120 0.880 49 H 0.123 0.877 50 H 0.124 0.876 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.160 5.785 24.223 25.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 H 0.085 0.915 4 C 0.057 3.943 5 N -0.315 5.315 6 C -0.385 4.385 7 H 0.081 0.919 8 C -0.193 4.193 9 N -0.546 5.546 10 Si 0.733 3.267 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.216 1.216 14 C 0.020 3.980 15 C -0.179 4.179 16 C 0.055 3.945 17 H 0.100 0.900 18 N -0.371 5.371 19 C 0.294 3.706 20 O -0.401 6.401 21 C -0.102 4.102 22 N -0.169 5.169 23 C -0.073 4.073 24 C -0.124 4.124 25 C -0.142 4.142 26 C -0.100 4.100 27 C -0.167 4.167 28 C -0.113 4.113 29 C -0.161 4.161 30 C -0.001 4.001 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.229 0.771 42 H 0.126 0.874 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.132 0.868 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.138 0.862 49 H 0.141 0.859 50 H 0.142 0.858 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.269 4.414 23.842 25.044 hybrid contribution 0.537 1.514 -0.680 1.744 sum -5.732 5.928 23.162 24.586 Atomic orbital electron populations 1.21726 0.95897 1.01498 1.00555 1.22176 0.94691 1.00584 0.96894 0.91483 1.20748 0.83256 0.96987 0.93280 1.44039 1.01613 1.69377 1.16440 1.19181 1.00662 1.33566 0.85045 0.91855 1.25213 0.98289 0.98335 0.97480 1.69997 1.25709 1.40348 1.18511 0.86218 0.79212 0.79191 0.82106 1.20219 1.21622 1.21551 1.20886 0.96672 0.94277 0.86134 1.22383 0.94817 1.01224 0.99495 1.21062 0.93761 0.97199 0.82442 0.89964 1.46280 1.66019 1.14303 1.10534 1.20235 0.78590 0.87422 0.84369 1.90700 1.49189 1.15816 1.84369 1.22255 1.03696 0.94456 0.89748 1.60260 1.22529 1.33117 1.00962 1.23362 0.85781 1.02822 0.95384 1.21376 0.97444 0.99082 0.94518 1.20553 0.98590 1.01071 0.94032 1.20394 0.97638 0.96664 0.95274 1.20986 0.96512 1.00085 0.99090 1.20874 0.99053 0.99268 0.92148 1.20473 0.98317 0.99314 0.98030 1.19722 0.95819 0.93522 0.91045 0.93929 0.92612 0.92986 0.96038 0.89498 0.93597 0.96200 0.92570 0.92425 0.92802 0.77142 0.87361 0.91023 0.92573 0.86847 0.90101 0.89359 0.86156 0.85939 0.85761 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.03 37.15 0.34 -1.75 16 2 C -0.12 -2.15 2.46 -90.50 -0.22 -2.38 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.18 4.22 4.53 -3.71 -0.02 4.20 16 5 N -0.59 -14.58 2.97 -172.32 -0.51 -15.10 16 6 C -0.25 -6.88 9.55 -15.06 -0.14 -7.02 16 7 H 0.06 1.69 7.86 -52.49 -0.41 1.28 16 8 C 0.01 0.16 5.00 -17.43 -0.09 0.08 16 9 N -0.90 -25.79 11.27 55.49 0.63 -25.17 16 10 Si 0.90 21.36 29.57 -169.99 -5.03 16.33 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 14 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 15 C -0.14 -2.46 5.65 -26.61 -0.15 -2.61 16 16 C 0.16 2.65 1.88 -67.88 -0.13 2.52 16 17 H 0.08 1.59 7.58 -51.93 -0.39 1.19 16 18 N -0.72 -9.42 4.36 -53.76 -0.23 -9.65 16 19 C 0.51 6.95 7.40 -10.98 -0.08 6.86 16 20 O -0.53 -9.14 14.00 5.56 0.08 -9.06 16 21 C 0.03 0.29 5.02 -4.97 -0.02 0.27 16 22 N -0.46 -5.45 4.92 -170.37 -0.84 -6.29 16 23 C 0.05 0.59 5.52 -2.42 -0.01 0.58 16 24 C -0.09 -0.82 7.04 -26.61 -0.19 -1.01 16 25 C -0.14 -1.43 6.23 -104.04 -0.65 -2.08 16 26 C -0.08 -0.71 10.03 -39.67 -0.40 -1.10 16 27 C -0.15 -1.17 10.06 -39.53 -0.40 -1.57 16 28 C -0.09 -0.76 10.02 -39.68 -0.40 -1.16 16 29 C -0.14 -1.32 9.54 -39.27 -0.37 -1.69 16 30 C 0.10 1.07 5.95 -83.41 -0.50 0.58 16 31 H 0.04 0.53 7.36 -51.93 -0.38 0.15 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 2.23 6.30 -51.93 -0.33 1.90 16 36 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.40 4.11 8.31 -40.82 -0.34 3.77 16 42 H 0.11 0.96 7.48 -51.93 -0.39 0.57 16 43 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 44 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 45 H 0.11 1.49 6.87 -51.93 -0.36 1.13 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 49 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 50 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 51 H 0.12 0.95 7.47 -52.49 -0.39 0.56 16 LS Contribution 398.74 15.07 6.01 6.01 Total: -1.00 -31.55 398.74 -11.80 -43.35 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -8.44 Total: 3.75 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -3.46 Total: -4.17 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.96 Total: -56.20 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.55 -11.80 -43.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944995943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.209 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds