Wall clock time and date at job start Wed Apr 1 2020 03:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.52912 * 2 1 4 4 C 1.53200 * 109.49547 * 239.91918 * 2 1 3 5 5 N 1.46924 * 108.77759 * 185.41262 * 4 2 1 6 6 C 1.36934 * 120.63276 * 233.59091 * 5 4 2 7 7 H 1.07998 * 120.00472 * 146.96664 * 6 5 4 8 8 C 1.38811 * 119.99881 * 326.96234 * 6 5 4 9 9 N 1.31620 * 119.99934 * 347.81982 * 8 6 5 10 10 Si 1.86797 * 120.00234 * 167.81889 * 8 6 5 11 11 H 1.48500 * 109.47076 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46903 * 119.99681 * 10 8 6 13 13 H 1.48500 * 109.47397 * 240.00267 * 10 8 6 14 14 C 1.46930 * 118.73862 * 53.61092 * 5 4 2 15 15 C 1.53194 * 108.76377 * 306.38062 * 14 5 4 16 16 C 1.53040 * 109.50108 * 120.08672 * 2 1 3 17 17 H 1.09000 * 109.46508 * 61.30417 * 16 2 1 18 18 N 1.46499 * 109.45633 * 301.32991 * 16 2 1 19 19 C 1.34782 * 120.00141 * 154.96846 * 18 16 2 20 20 O 1.21282 * 119.99644 * 0.02562 * 19 18 16 21 21 C 1.50697 * 120.00190 * 179.97438 * 19 18 16 22 22 N 1.46905 * 109.47151 * 186.58148 * 21 19 18 23 23 C 1.47915 * 110.99533 * 56.54360 * 22 21 19 24 24 C 1.54605 * 102.61655 * 149.18652 * 23 22 21 25 25 C 1.51573 * 102.84695 * 334.50902 * 24 23 22 26 26 C 1.37923 * 131.55629 * 196.10608 * 25 24 23 27 27 C 1.38302 * 120.07630 * 179.07227 * 26 25 24 28 28 C 1.38306 * 119.88520 * 0.55562 * 27 26 25 29 29 C 1.37910 * 120.26385 * 359.58273 * 28 27 26 30 30 C 1.38964 * 107.96098 * 15.77270 * 25 24 23 31 31 H 1.09004 * 109.46756 * 299.91480 * 1 2 3 32 32 H 1.08996 * 109.47302 * 59.91706 * 1 2 3 33 33 H 1.09004 * 109.47149 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.58371 * 305.20106 * 4 2 1 35 35 H 1.08997 * 109.58212 * 65.48710 * 4 2 1 36 36 H 0.97000 * 120.00020 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.58442 * 66.17581 * 14 5 4 38 38 H 1.08997 * 109.58698 * 186.46588 * 14 5 4 39 39 H 1.08999 * 109.51240 * 294.70281 * 15 14 5 40 40 H 1.08997 * 109.49078 * 174.59730 * 15 14 5 41 41 H 0.97000 * 120.00206 * 334.97665 * 18 16 2 42 42 H 1.09002 * 109.46709 * 66.58858 * 21 19 18 43 43 H 1.09000 * 109.47602 * 306.58506 * 21 19 18 44 44 H 1.09001 * 110.78184 * 30.90690 * 23 22 21 45 45 H 1.08998 * 110.78290 * 267.46815 * 23 22 21 46 46 H 1.09006 * 110.73080 * 216.17199 * 24 23 22 47 47 H 1.08995 * 110.89077 * 92.92457 * 24 23 22 48 48 H 1.07999 * 119.96102 * 359.37419 * 26 25 24 49 49 H 1.08001 * 120.05639 * 180.27332 * 27 26 25 50 50 H 1.08000 * 119.86379 * 179.86354 * 28 27 26 51 51 H 1.08000 * 119.89848 * 180.25688 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2497 5 7 3.5045 -0.8292 -1.1698 6 6 4.2934 -0.3793 -2.1946 7 1 5.2658 0.0404 -1.9834 8 6 3.8434 -0.4629 -3.5051 9 7 2.7788 -1.1824 -3.7907 10 14 4.7484 0.4456 -4.8633 11 1 5.9045 1.1765 -4.2848 12 1 5.2346 -0.5294 -5.8723 13 1 3.8262 1.4117 -5.5125 14 6 4.1053 -1.4268 0.0305 15 6 3.5710 -0.6948 1.2657 16 6 2.0408 -0.7232 1.2482 17 1 1.6969 -1.7574 1.2351 18 7 1.5267 -0.0530 2.4452 19 6 1.3980 -0.7385 3.5986 20 8 1.7084 -1.9100 3.6455 21 6 0.8697 -0.0490 4.8300 22 7 0.9729 -0.9557 5.9812 23 6 2.3666 -1.4126 6.1728 24 6 2.4479 -1.6162 7.7032 25 6 1.3815 -0.6743 8.2256 26 6 1.1443 -0.1704 9.4874 27 6 0.0939 0.7042 9.6983 28 6 -0.7258 1.0638 8.6439 29 6 -0.4946 0.5605 7.3809 30 6 0.5638 -0.3192 7.1596 31 1 -0.3633 0.5125 0.8908 32 1 -0.3634 0.5151 -0.8892 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6051 -1.7216 -1.2980 35 1 1.7615 -0.1592 -2.1390 36 1 2.4645 -1.2411 -4.7065 37 1 3.8374 -2.4819 0.0865 38 1 5.1897 -1.3270 -0.0152 39 1 3.9158 0.3391 1.2536 40 1 3.9337 -1.1894 2.1667 41 1 1.2787 0.8840 2.4077 42 1 -0.1743 0.2231 4.6743 43 1 1.4548 0.8503 5.0222 44 1 3.0723 -0.6487 5.8463 45 1 2.5414 -2.3517 5.6479 46 1 3.4311 -1.3323 8.0786 47 1 2.2171 -2.6473 7.9709 48 1 1.7826 -0.4553 10.3107 49 1 -0.0889 1.1020 10.6856 50 1 -1.5473 1.7450 8.8095 51 1 -1.1358 0.8485 6.5610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944995943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:57 Heat of formation + Delta-G solvation = 4.216795 kcal Electronic energy + Delta-G solvation = -30171.701057 eV Core-core repulsion = 26263.493182 eV Total energy + Delta-G solvation = -3908.207874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.94878 -40.81174 -39.19174 -37.42748 -36.10055 -34.15363 -33.70299 -33.48082 -31.50871 -30.73494 -29.80807 -27.96194 -27.55385 -26.38745 -23.97740 -23.90645 -22.53338 -22.37284 -22.07371 -21.37953 -20.66903 -18.84863 -18.17908 -17.72876 -17.14940 -16.89454 -16.65183 -16.47476 -16.17971 -16.07297 -15.56766 -15.48205 -14.95728 -14.84243 -14.64307 -14.52089 -14.38009 -14.14175 -13.85940 -13.70475 -13.49060 -13.23370 -13.13306 -12.92158 -12.89724 -12.86510 -12.59279 -12.46418 -12.46063 -12.23237 -12.00140 -11.87372 -11.74986 -11.73798 -11.55459 -11.27426 -11.12582 -10.59958 -10.56362 -9.98229 -9.69685 -8.68444 -8.64820 -7.89213 -5.41685 0.44231 0.49404 1.45984 1.47698 1.58398 1.61621 2.02030 2.49460 2.67125 2.94460 3.27126 3.56348 3.58696 3.65699 3.76207 3.85423 4.00159 4.05410 4.10796 4.20230 4.22358 4.27178 4.30907 4.34399 4.50123 4.54815 4.56893 4.66603 4.68742 4.73408 4.79283 4.84644 4.92986 4.95825 4.98235 4.99718 5.08613 5.10631 5.15547 5.29967 5.34061 5.37645 5.48785 5.54651 5.57011 5.64991 5.66797 5.71980 5.75897 5.93198 6.27925 6.40142 6.60752 7.14062 7.28390 7.81214 8.36871 9.17398 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.027661 B = 0.002100 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.997537 B =13332.718040 C =13779.568191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 H 0.075 0.925 4 C 0.191 3.809 5 N -0.610 5.610 6 C -0.265 4.265 7 H 0.065 0.935 8 C -0.047 4.047 9 N -0.935 5.935 10 Si 0.970 3.030 11 H -0.265 1.265 12 H -0.294 1.294 13 H -0.287 1.287 14 C 0.144 3.856 15 C -0.123 4.123 16 C 0.172 3.828 17 H 0.054 0.946 18 N -0.707 5.707 19 C 0.510 3.490 20 O -0.566 6.566 21 C 0.036 3.964 22 N -0.475 5.475 23 C 0.052 3.948 24 C -0.082 4.082 25 C -0.157 4.157 26 C -0.089 4.089 27 C -0.148 4.148 28 C -0.097 4.097 29 C -0.148 4.148 30 C 0.075 3.925 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.040 0.960 34 H -0.010 1.010 35 H 0.057 0.943 36 H 0.251 0.749 37 H 0.004 0.996 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.414 0.586 42 H 0.131 0.869 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.138 0.862 49 H 0.147 0.853 50 H 0.149 0.851 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.806 8.457 26.658 28.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.128 4.128 3 H 0.094 0.906 4 C 0.065 3.935 5 N -0.333 5.333 6 C -0.395 4.395 7 H 0.083 0.917 8 C -0.243 4.243 9 N -0.580 5.580 10 Si 0.798 3.202 11 H -0.190 1.190 12 H -0.221 1.221 13 H -0.213 1.213 14 C 0.018 3.982 15 C -0.164 4.164 16 C 0.068 3.932 17 H 0.072 0.928 18 N -0.359 5.359 19 C 0.297 3.703 20 O -0.444 6.444 21 C -0.092 4.092 22 N -0.189 5.189 23 C -0.073 4.073 24 C -0.119 4.119 25 C -0.160 4.160 26 C -0.107 4.107 27 C -0.166 4.166 28 C -0.116 4.116 29 C -0.169 4.169 30 C -0.023 4.023 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.008 0.992 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.022 0.978 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.250 0.750 42 H 0.148 0.852 43 H 0.111 0.889 44 H 0.075 0.925 45 H 0.106 0.894 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.155 0.845 49 H 0.165 0.835 50 H 0.167 0.833 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.925 7.126 26.319 28.132 hybrid contribution 0.736 0.625 -1.359 1.667 sum -6.189 7.750 24.960 26.858 Atomic orbital electron populations 1.21678 0.93601 1.01384 1.02346 1.21895 0.96489 0.99937 0.94474 0.90622 1.20545 0.82645 0.95443 0.94878 1.44308 1.02192 1.69832 1.16945 1.19496 1.00966 1.33134 0.85916 0.91718 1.25983 0.99263 0.99361 0.99661 1.70162 1.27268 1.41932 1.18643 0.85177 0.78290 0.77794 0.78985 1.18960 1.22074 1.21345 1.20970 0.96824 0.93769 0.86645 1.22172 0.95485 1.01086 0.97608 1.20596 0.93023 0.95979 0.83652 0.92797 1.45964 1.65670 1.15031 1.09231 1.20817 0.77546 0.86915 0.85050 1.90701 1.50849 1.17861 1.84996 1.22253 1.05058 0.94332 0.87605 1.60261 1.22634 1.34178 1.01836 1.23230 0.86062 1.01579 0.96467 1.21334 0.98353 0.99052 0.93200 1.20749 0.98898 1.01609 0.94732 1.20688 0.98244 0.96614 0.95195 1.21362 0.95755 0.99256 1.00275 1.21234 0.99565 0.99164 0.91618 1.20737 0.97977 0.98995 0.99165 1.19885 0.96948 0.94797 0.90687 0.90371 0.92544 0.94087 0.99193 0.92486 0.93994 0.97844 0.92473 0.91466 0.92141 0.74964 0.85172 0.88856 0.92530 0.89435 0.88554 0.89622 0.84461 0.83512 0.83287 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 9.03 71.98 0.65 -3.15 16 2 C -0.11 -3.72 2.46 -10.72 -0.03 -3.75 16 3 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 4 C 0.19 9.09 4.53 86.37 0.39 9.48 16 5 N -0.61 -30.82 2.97 -699.09 -2.08 -32.90 16 6 C -0.26 -14.53 9.55 84.03 0.80 -13.72 16 7 H 0.07 3.47 7.86 -2.91 -0.02 3.44 16 8 C -0.05 -2.60 5.00 84.86 0.42 -2.18 16 9 N -0.93 -55.23 11.27 21.65 0.24 -54.98 16 10 Si 0.97 44.44 29.57 68.60 2.03 46.46 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 13 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 14 C 0.14 6.28 6.52 86.36 0.56 6.84 16 15 C -0.12 -4.33 5.65 30.68 0.17 -4.15 16 16 C 0.17 5.68 1.88 45.02 0.08 5.77 16 17 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 18 N -0.71 -17.06 4.36 -442.39 -1.93 -18.99 16 19 C 0.51 13.24 7.40 87.66 0.65 13.89 16 20 O -0.57 -19.84 14.00 -3.03 -0.04 -19.88 16 21 C 0.04 0.69 5.02 85.56 0.43 1.12 16 22 N -0.47 -10.88 4.92 -692.92 -3.41 -14.28 16 23 C 0.05 1.19 5.52 86.65 0.48 1.67 16 24 C -0.08 -1.51 7.04 30.67 0.22 -1.29 16 25 C -0.16 -2.99 6.23 -19.49 -0.12 -3.12 16 26 C -0.09 -1.34 10.03 22.21 0.22 -1.12 16 27 C -0.15 -1.87 10.06 22.30 0.22 -1.65 16 28 C -0.10 -1.26 10.02 22.21 0.22 -1.03 16 29 C -0.15 -2.39 9.54 22.47 0.21 -2.17 16 30 C 0.07 1.52 5.95 38.28 0.23 1.75 16 31 H 0.08 1.69 7.36 -2.38 -0.02 1.68 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 34 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 35 H 0.06 3.04 6.30 -2.39 -0.02 3.02 16 36 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 37 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.06 2.42 7.93 -2.39 -0.02 2.41 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.41 7.16 8.31 -92.71 -0.77 6.39 16 42 H 0.13 1.87 7.48 -2.39 -0.02 1.86 16 43 H 0.09 1.37 8.13 -2.39 -0.02 1.35 16 44 H 0.06 1.22 7.87 -2.39 -0.02 1.20 16 45 H 0.09 2.41 6.87 -2.39 -0.02 2.40 16 46 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 47 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 49 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 50 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 51 H 0.13 1.69 7.47 -2.91 -0.02 1.67 16 Total: -1.00 -71.28 398.74 0.79 -70.49 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.15 Total: 20.90 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 5.82 Total: 3.18 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -7.17 Total: -121.15 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.04 Total: -19.88 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -71.28 0.79 -70.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944995943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.705 kcal (2) G-P(sol) polarization free energy of solvation -71.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds