Wall clock time and date at job start Wed Apr 1 2020 03:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.70107 * 2 1 4 4 C 1.52761 * 109.50717 * 239.88551 * 2 1 3 5 5 C 1.53044 * 109.38009 * 185.70504 * 4 2 1 6 6 H 1.09002 * 109.45762 * 181.26056 * 5 4 2 7 7 N 1.46500 * 109.46140 * 301.21650 * 5 4 2 8 8 C 1.34769 * 119.99880 * 205.06814 * 7 5 4 9 9 O 1.21513 * 120.00221 * 0.02562 * 8 7 5 10 10 C 1.48176 * 119.99724 * 180.02562 * 8 7 5 11 11 C 1.39177 * 119.81996 * 179.72358 * 10 8 7 12 12 C 1.39001 * 119.25040 * 179.78589 * 11 10 8 13 13 C 1.37862 * 118.55604 * 0.33559 * 12 11 10 14 14 C 1.39119 * 119.07312 * 359.94613 * 13 12 11 15 15 N 1.31314 * 121.20139 * 359.90922 * 14 13 12 16 16 C 1.50507 * 122.48393 * 180.14593 * 13 12 11 17 17 C 1.52783 * 110.48016 * 342.27562 * 16 13 12 18 18 C 1.53310 * 108.50580 * 51.12345 * 17 16 13 19 19 C 1.50357 * 118.61717 * 179.97438 * 12 11 10 20 20 C 1.53039 * 109.53878 * 61.24145 * 5 4 2 21 21 C 1.53191 * 109.31106 * 298.63355 * 20 5 4 22 22 N 1.46925 * 108.77889 * 54.63654 * 21 20 5 23 23 C 1.36931 * 120.63447 * 126.36404 * 22 21 20 24 24 H 1.07999 * 120.00105 * 210.77882 * 23 22 21 25 25 C 1.38813 * 119.99704 * 30.78148 * 23 22 21 26 26 N 1.31625 * 119.99807 * 197.75940 * 25 23 22 27 27 Si 1.86798 * 120.00409 * 17.75283 * 25 23 22 28 28 H 1.48510 * 109.46985 * 273.13325 * 27 25 23 29 29 H 1.48500 * 109.46977 * 33.12822 * 27 25 23 30 30 H 1.48497 * 109.47439 * 153.12953 * 27 25 23 31 31 H 1.09001 * 109.46910 * 299.63817 * 1 2 3 32 32 H 1.08996 * 109.47443 * 59.64036 * 1 2 3 33 33 H 1.09000 * 109.47078 * 179.64298 * 1 2 3 34 34 H 1.08998 * 109.56746 * 65.67053 * 4 2 1 35 35 H 1.09000 * 109.36030 * 305.61400 * 4 2 1 36 36 H 0.96996 * 119.99425 * 25.07234 * 7 5 4 37 37 H 1.07997 * 120.37271 * 0.06305 * 11 10 8 38 38 H 1.08002 * 119.39607 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.29815 * 102.58304 * 16 13 12 40 40 H 1.09000 * 109.29975 * 221.96098 * 16 13 12 41 41 H 1.08995 * 109.63267 * 170.83244 * 17 16 13 42 42 H 1.09007 * 109.63074 * 291.21715 * 17 16 13 43 43 H 1.08993 * 109.64154 * 49.85418 * 18 17 16 44 44 H 1.09005 * 109.63789 * 170.26570 * 18 17 16 45 45 H 1.08998 * 109.30494 * 42.61981 * 19 12 11 46 46 H 1.09001 * 109.30373 * 283.23153 * 19 12 11 47 47 H 1.08996 * 109.49972 * 178.68375 * 20 5 4 48 48 H 1.09001 * 109.49693 * 58.58363 * 20 5 4 49 49 H 1.09001 * 109.58789 * 294.84717 * 21 20 5 50 50 H 1.09003 * 109.58349 * 174.42097 * 21 20 5 51 51 H 0.96998 * 119.99952 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7225 -1.2456 5 6 3.5638 -0.8461 -1.1727 6 1 3.9313 -1.3415 -2.0714 7 7 4.1578 0.4895 -1.0745 8 6 5.4214 0.6975 -1.4942 9 8 6.0680 -0.2226 -1.9545 10 6 6.0223 2.0483 -1.3944 11 6 7.3296 2.2577 -1.8236 12 6 7.8800 3.5305 -1.7287 13 6 7.1082 4.5447 -1.2028 14 6 5.8108 4.2613 -0.7882 15 7 5.3129 3.0507 -0.8911 16 6 7.6138 5.9553 -1.0623 17 6 9.1388 5.9878 -1.1491 18 6 9.5707 5.2281 -2.4088 19 6 9.2936 3.7406 -2.1960 20 6 3.9523 -1.6686 0.0580 21 6 3.4644 -0.9519 1.3210 22 7 2.0226 -0.6996 1.1945 23 6 1.1537 -1.1136 2.1685 24 1 0.1430 -1.3913 1.9080 25 6 1.5719 -1.1764 3.4906 26 7 0.8887 -1.8855 4.3640 27 14 3.1044 -0.2547 4.0303 28 1 4.2999 -1.1057 3.8020 29 1 3.2312 0.9983 3.2435 30 1 3.0005 0.0759 5.4743 31 1 -0.3633 0.5082 0.8932 32 1 -0.3634 0.5194 -0.8867 33 1 -0.3633 -1.0276 -0.0064 34 1 1.7632 -0.1565 -2.1350 35 1 1.5963 -1.7169 -1.2937 36 1 3.6415 1.2240 -0.7074 37 1 7.9083 1.4414 -2.2300 38 1 5.2018 5.0518 -0.3751 39 1 7.1943 6.5694 -1.8593 40 1 7.2990 6.3565 -0.0989 41 1 9.4802 7.0211 -1.2095 42 1 9.5661 5.5121 -0.2663 43 1 9.0020 5.5873 -3.2664 44 1 10.6352 5.3843 -2.5838 45 1 9.4458 3.2075 -3.1345 46 1 9.9825 3.3496 -1.4472 47 1 5.0363 -1.7761 0.0965 48 1 3.4905 -2.6541 -0.0025 49 1 3.9929 -0.0050 1.4310 50 1 3.6504 -1.5799 2.1923 51 1 1.1807 -1.9291 5.2879 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947529701.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:43 Heat of formation + Delta-G solvation = 5.389843 kcal Electronic energy + Delta-G solvation = -30757.668751 eV Core-core repulsion = 26849.511744 eV Total energy + Delta-G solvation = -3908.157007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.11146 -39.68793 -37.93629 -36.99208 -34.44358 -33.12987 -32.35827 -31.90987 -31.26437 -30.27960 -29.54733 -26.58261 -25.13561 -24.56673 -24.16596 -23.00809 -22.58574 -21.65126 -20.55946 -19.75230 -18.80740 -17.92157 -16.90002 -16.32745 -15.98927 -15.68438 -15.38544 -15.17741 -15.04928 -14.81063 -14.48730 -14.32497 -14.08519 -13.91834 -13.71039 -13.44389 -13.20853 -13.02529 -12.99522 -12.57535 -12.38538 -12.30893 -11.86477 -11.79172 -11.58113 -11.39285 -11.36368 -11.23586 -11.02918 -10.99564 -10.60828 -10.33088 -10.23268 -10.15482 -9.97369 -9.68567 -9.55831 -9.52314 -9.35206 -9.16113 -8.77703 -8.49817 -6.86839 -5.90436 -3.29515 0.50729 0.99599 2.74632 3.25904 3.36173 3.51255 3.55417 3.75953 4.04740 4.20172 4.22802 4.42737 4.51469 4.56398 4.57409 4.82162 4.91354 4.93071 5.02946 5.06013 5.20636 5.22547 5.28856 5.33326 5.38705 5.47510 5.48705 5.51168 5.55215 5.57161 5.66325 5.79409 5.80693 5.84395 5.99474 6.02618 6.08147 6.13376 6.28603 6.36127 6.40679 6.42971 6.43279 6.52869 6.71280 6.75265 6.87230 7.00164 7.07931 7.52097 7.83505 8.03739 8.35549 8.39948 8.98891 9.77252 10.15855 11.25376 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.002999 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.827059 B = 9334.871648 C =10014.324037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.139 4.139 5 C 0.151 3.849 6 H 0.080 0.920 7 N -0.695 5.695 8 C 0.568 3.432 9 O -0.542 6.542 10 C 0.077 3.923 11 C -0.112 4.112 12 C -0.044 4.044 13 C -0.112 4.112 14 C 0.103 3.897 15 N -0.456 5.456 16 C -0.079 4.079 17 C -0.122 4.122 18 C -0.120 4.120 19 C -0.084 4.084 20 C -0.145 4.145 21 C 0.127 3.873 22 N -0.602 5.602 23 C -0.256 4.256 24 H 0.091 0.909 25 C 0.025 3.975 26 N -0.912 5.912 27 Si 0.883 3.117 28 H -0.288 1.288 29 H -0.273 1.273 30 H -0.305 1.305 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.412 0.588 37 H 0.147 0.853 38 H 0.161 0.839 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.058 0.942 48 H 0.075 0.925 49 H 0.022 0.978 50 H 0.073 0.927 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.986 15.920 -15.101 26.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.064 3.936 3 H 0.044 0.956 4 C -0.179 4.179 5 C 0.047 3.953 6 H 0.098 0.902 7 N -0.346 5.346 8 C 0.353 3.647 9 O -0.420 6.420 10 C -0.059 4.059 11 C -0.133 4.133 12 C -0.052 4.052 13 C -0.114 4.114 14 C -0.059 4.059 15 N -0.167 5.167 16 C -0.116 4.116 17 C -0.159 4.159 18 C -0.157 4.157 19 C -0.120 4.120 20 C -0.185 4.185 21 C 0.002 3.998 22 N -0.326 5.326 23 C -0.384 4.384 24 H 0.108 0.892 25 C -0.174 4.174 26 N -0.555 5.555 27 Si 0.714 3.286 28 H -0.216 1.216 29 H -0.198 1.198 30 H -0.234 1.234 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.249 0.751 37 H 0.164 0.836 38 H 0.178 0.822 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.040 0.960 50 H 0.091 0.909 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.493 14.964 -14.972 25.654 hybrid contribution 1.485 0.941 0.487 1.824 sum 15.978 15.905 -14.486 26.797 Atomic orbital electron populations 1.21804 0.95032 1.02001 1.00540 1.20328 0.93848 0.93103 0.86282 0.95595 1.22293 0.93508 1.02782 0.99305 1.20979 0.93388 0.82144 0.98781 0.90205 1.46063 1.13672 1.13103 1.61758 1.17852 0.82207 0.86364 0.78311 1.90749 1.61615 1.43010 1.46581 1.21182 0.92315 0.93663 0.98790 1.22107 0.95190 0.97496 0.98462 1.19860 0.96562 0.92289 0.96472 1.20759 0.95200 0.96681 0.98794 1.22844 0.92773 0.93673 0.96581 1.67523 1.37198 1.00120 1.11847 1.20442 0.96197 0.91957 1.03047 1.21570 0.94985 1.00854 0.98498 1.21563 1.01616 0.94275 0.98281 1.20488 0.91859 0.97685 1.02009 1.22379 1.00220 0.99732 0.96207 1.21328 0.85168 0.97016 0.96296 1.44435 1.01984 1.65664 1.20545 1.18909 0.96281 1.37858 0.85387 0.89160 1.25335 0.97476 0.98744 0.95798 1.69803 1.41093 1.40792 1.03806 0.86988 0.83523 0.81540 0.76507 1.21629 1.19779 1.23368 0.91622 0.94105 0.92297 0.92048 0.90107 0.75082 0.83550 0.82153 0.89998 0.90022 0.91058 0.91407 0.91435 0.91020 0.89979 0.89821 0.92356 0.90613 0.95968 0.90852 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.95 37.16 0.30 -2.17 16 2 C 0.17 3.27 3.19 -67.82 -0.22 3.05 16 3 H 0.03 0.50 6.64 -51.93 -0.34 0.16 16 4 C -0.14 -2.27 5.05 -26.83 -0.14 -2.40 16 5 C 0.15 2.57 2.78 -67.89 -0.19 2.38 16 6 H 0.08 1.33 7.57 -51.93 -0.39 0.94 16 7 N -0.69 -11.67 4.25 -54.60 -0.23 -11.90 16 8 C 0.57 9.65 7.78 -12.18 -0.09 9.56 16 9 O -0.54 -10.22 15.99 5.35 0.09 -10.13 16 10 C 0.08 1.14 6.75 -83.05 -0.56 0.58 16 11 C -0.11 -1.39 9.26 -38.95 -0.36 -1.75 16 12 C -0.04 -0.44 5.74 -104.64 -0.60 -1.04 16 13 C -0.11 -1.06 5.75 -104.53 -0.60 -1.66 16 14 C 0.10 1.13 10.79 -17.45 -0.19 0.95 16 15 N -0.46 -6.47 9.55 -9.73 -0.09 -6.56 16 16 C -0.08 -0.49 5.71 -28.09 -0.16 -0.65 16 17 C -0.12 -0.66 5.96 -26.68 -0.16 -0.82 16 18 C -0.12 -0.66 5.98 -26.67 -0.16 -0.82 16 19 C -0.08 -0.59 5.72 -28.15 -0.16 -0.75 16 20 C -0.15 -2.79 5.77 -26.61 -0.15 -2.94 16 21 C 0.13 2.87 3.94 -3.71 -0.01 2.86 16 22 N -0.60 -14.02 2.73 -165.03 -0.45 -14.48 16 23 C -0.26 -6.98 9.00 -15.06 -0.14 -7.12 16 24 H 0.09 2.59 6.44 -52.49 -0.34 2.25 16 25 C 0.03 0.73 5.26 -17.43 -0.09 0.64 16 26 N -0.91 -28.00 13.97 55.49 0.78 -27.22 16 27 Si 0.88 23.01 24.34 -169.99 -4.14 18.88 16 28 H -0.29 -7.37 6.42 56.52 0.36 -7.00 16 29 H -0.27 -7.06 6.90 56.52 0.39 -6.67 16 30 H -0.31 -8.09 7.11 56.52 0.40 -7.68 16 31 H 0.06 1.30 7.63 -51.93 -0.40 0.90 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.11 7.44 -51.93 -0.39 0.72 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.41 6.90 6.21 -40.82 -0.25 6.65 16 37 H 0.15 1.75 7.64 -52.49 -0.40 1.34 16 38 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.44 8.13 -51.93 -0.42 0.02 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.41 8.11 -51.92 -0.42 -0.02 16 43 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 49 H 0.02 0.52 6.75 -51.93 -0.35 0.17 16 50 H 0.07 1.83 4.60 -51.93 -0.24 1.59 16 51 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 386.69 15.07 5.83 5.83 Total: -1.00 -32.76 386.69 -10.11 -42.88 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -8.20 Total: 4.82 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -3.69 Total: -2.10 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.00 Total: -60.17 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.14 Total: 18.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.76 -10.11 -42.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947529701.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.269 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds