Wall clock time and date at job start Wed Apr 1 2020 03:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.70107 * 2 1 4 4 C 1.52761 * 109.50717 * 239.88551 * 2 1 3 5 5 C 1.53044 * 109.38009 * 185.70504 * 4 2 1 6 6 H 1.09002 * 109.45762 * 181.26056 * 5 4 2 7 7 N 1.46500 * 109.46140 * 301.21650 * 5 4 2 8 8 C 1.34769 * 119.99880 * 205.06814 * 7 5 4 9 9 O 1.21513 * 120.00221 * 0.02562 * 8 7 5 10 10 C 1.48176 * 119.99724 * 180.02562 * 8 7 5 11 11 C 1.39177 * 119.81996 * 179.72358 * 10 8 7 12 12 C 1.39001 * 119.25040 * 179.78589 * 11 10 8 13 13 C 1.37862 * 118.55604 * 0.33559 * 12 11 10 14 14 C 1.39119 * 119.07312 * 359.94613 * 13 12 11 15 15 N 1.31314 * 121.20139 * 359.90922 * 14 13 12 16 16 C 1.50507 * 122.48393 * 180.14593 * 13 12 11 17 17 C 1.52783 * 110.48016 * 342.27562 * 16 13 12 18 18 C 1.53310 * 108.50580 * 51.12345 * 17 16 13 19 19 C 1.50357 * 118.61717 * 179.97438 * 12 11 10 20 20 C 1.53039 * 109.53878 * 61.24145 * 5 4 2 21 21 C 1.53191 * 109.31106 * 298.63355 * 20 5 4 22 22 N 1.46925 * 108.77889 * 54.63654 * 21 20 5 23 23 C 1.36931 * 120.63447 * 126.36404 * 22 21 20 24 24 H 1.07999 * 120.00105 * 210.77882 * 23 22 21 25 25 C 1.38813 * 119.99704 * 30.78148 * 23 22 21 26 26 N 1.31625 * 119.99807 * 197.75940 * 25 23 22 27 27 Si 1.86798 * 120.00409 * 17.75283 * 25 23 22 28 28 H 1.48510 * 109.46985 * 273.13325 * 27 25 23 29 29 H 1.48500 * 109.46977 * 33.12822 * 27 25 23 30 30 H 1.48497 * 109.47439 * 153.12953 * 27 25 23 31 31 H 1.09001 * 109.46910 * 299.63817 * 1 2 3 32 32 H 1.08996 * 109.47443 * 59.64036 * 1 2 3 33 33 H 1.09000 * 109.47078 * 179.64298 * 1 2 3 34 34 H 1.08998 * 109.56746 * 65.67053 * 4 2 1 35 35 H 1.09000 * 109.36030 * 305.61400 * 4 2 1 36 36 H 0.96996 * 119.99425 * 25.07234 * 7 5 4 37 37 H 1.07997 * 120.37271 * 0.06305 * 11 10 8 38 38 H 1.08002 * 119.39607 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.29815 * 102.58304 * 16 13 12 40 40 H 1.09000 * 109.29975 * 221.96098 * 16 13 12 41 41 H 1.08995 * 109.63267 * 170.83244 * 17 16 13 42 42 H 1.09007 * 109.63074 * 291.21715 * 17 16 13 43 43 H 1.08993 * 109.64154 * 49.85418 * 18 17 16 44 44 H 1.09005 * 109.63789 * 170.26570 * 18 17 16 45 45 H 1.08998 * 109.30494 * 42.61981 * 19 12 11 46 46 H 1.09001 * 109.30373 * 283.23153 * 19 12 11 47 47 H 1.08996 * 109.49972 * 178.68375 * 20 5 4 48 48 H 1.09001 * 109.49693 * 58.58363 * 20 5 4 49 49 H 1.09001 * 109.58789 * 294.84717 * 21 20 5 50 50 H 1.09003 * 109.58349 * 174.42097 * 21 20 5 51 51 H 0.96998 * 119.99952 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7225 -1.2456 5 6 3.5638 -0.8461 -1.1727 6 1 3.9313 -1.3415 -2.0714 7 7 4.1578 0.4895 -1.0745 8 6 5.4214 0.6975 -1.4942 9 8 6.0680 -0.2226 -1.9545 10 6 6.0223 2.0483 -1.3944 11 6 7.3296 2.2577 -1.8236 12 6 7.8800 3.5305 -1.7287 13 6 7.1082 4.5447 -1.2028 14 6 5.8108 4.2613 -0.7882 15 7 5.3129 3.0507 -0.8911 16 6 7.6138 5.9553 -1.0623 17 6 9.1388 5.9878 -1.1491 18 6 9.5707 5.2281 -2.4088 19 6 9.2936 3.7406 -2.1960 20 6 3.9523 -1.6686 0.0580 21 6 3.4644 -0.9519 1.3210 22 7 2.0226 -0.6996 1.1945 23 6 1.1537 -1.1136 2.1685 24 1 0.1430 -1.3913 1.9080 25 6 1.5719 -1.1764 3.4906 26 7 0.8887 -1.8855 4.3640 27 14 3.1044 -0.2547 4.0303 28 1 4.2999 -1.1057 3.8020 29 1 3.2312 0.9983 3.2435 30 1 3.0005 0.0759 5.4743 31 1 -0.3633 0.5082 0.8932 32 1 -0.3634 0.5194 -0.8867 33 1 -0.3633 -1.0276 -0.0064 34 1 1.7632 -0.1565 -2.1350 35 1 1.5963 -1.7169 -1.2937 36 1 3.6415 1.2240 -0.7074 37 1 7.9083 1.4414 -2.2300 38 1 5.2018 5.0518 -0.3751 39 1 7.1943 6.5694 -1.8593 40 1 7.2990 6.3565 -0.0989 41 1 9.4802 7.0211 -1.2095 42 1 9.5661 5.5121 -0.2663 43 1 9.0020 5.5873 -3.2664 44 1 10.6352 5.3843 -2.5838 45 1 9.4458 3.2075 -3.1345 46 1 9.9825 3.3496 -1.4472 47 1 5.0363 -1.7761 0.0965 48 1 3.4905 -2.6541 -0.0025 49 1 3.9929 -0.0050 1.4310 50 1 3.6504 -1.5799 2.1923 51 1 1.1807 -1.9291 5.2879 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947529701.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:41 Heat of formation + Delta-G solvation = -14.829427 kcal Electronic energy + Delta-G solvation = -30758.545525 eV Core-core repulsion = 26849.511744 eV Total energy + Delta-G solvation = -3909.033781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.03997 -40.95730 -39.38152 -37.73721 -36.05227 -34.17360 -33.87036 -33.32665 -32.51444 -31.62423 -30.41290 -28.16317 -26.75345 -25.61441 -24.94849 -24.33421 -23.72394 -22.70748 -22.10160 -20.61292 -20.34342 -18.94843 -18.45421 -17.64509 -17.38994 -16.76687 -16.58571 -16.44334 -16.23218 -16.18281 -15.66484 -15.38148 -15.26693 -15.12488 -14.77659 -14.67516 -14.47891 -14.25144 -14.06895 -13.69149 -13.60640 -13.36019 -13.30947 -13.27088 -13.00639 -12.85158 -12.67672 -12.28718 -12.18217 -11.90275 -11.88270 -11.79956 -11.78130 -11.51627 -11.44265 -11.34537 -11.16413 -10.71782 -10.50310 -10.47579 -10.19163 -9.88638 -8.85038 -8.14104 -5.47569 -0.43184 0.15695 1.25817 1.35727 1.44100 1.62406 2.05318 2.40941 2.76409 3.05289 3.10264 3.28423 3.52853 3.60957 3.77136 3.81392 3.84306 3.91207 4.02330 4.03380 4.08989 4.22474 4.32194 4.40252 4.43345 4.51050 4.54046 4.56865 4.60455 4.70457 4.74606 4.80238 4.86841 4.91341 4.91847 4.96573 5.00510 5.03087 5.03533 5.06458 5.13959 5.21049 5.25064 5.35081 5.44158 5.44438 5.48359 5.56604 5.64197 5.93333 6.21429 6.36677 6.75459 6.94274 7.08222 7.65395 8.07469 9.05552 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.002999 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.827059 B = 9334.871648 C =10014.324037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.163 3.837 3 H 0.035 0.965 4 C -0.127 4.127 5 C 0.156 3.844 6 H 0.090 0.910 7 N -0.695 5.695 8 C 0.566 3.434 9 O -0.569 6.569 10 C 0.046 3.954 11 C -0.117 4.117 12 C -0.047 4.047 13 C -0.100 4.100 14 C 0.093 3.907 15 N -0.481 5.481 16 C -0.079 4.079 17 C -0.121 4.121 18 C -0.117 4.117 19 C -0.084 4.084 20 C -0.137 4.137 21 C 0.129 3.871 22 N -0.612 5.612 23 C -0.230 4.230 24 H 0.072 0.928 25 C -0.031 4.031 26 N -0.958 5.958 27 Si 0.936 3.064 28 H -0.285 1.285 29 H -0.270 1.270 30 H -0.312 1.312 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.412 0.588 37 H 0.144 0.856 38 H 0.186 0.814 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.056 0.944 48 H 0.076 0.924 49 H 0.018 0.982 50 H 0.046 0.954 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.642 18.778 -17.263 30.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.058 3.942 3 H 0.052 0.948 4 C -0.166 4.166 5 C 0.052 3.948 6 H 0.108 0.892 7 N -0.345 5.345 8 C 0.352 3.648 9 O -0.448 6.448 10 C -0.090 4.090 11 C -0.138 4.138 12 C -0.054 4.054 13 C -0.102 4.102 14 C -0.069 4.069 15 N -0.192 5.192 16 C -0.116 4.116 17 C -0.159 4.159 18 C -0.155 4.155 19 C -0.121 4.121 20 C -0.177 4.177 21 C 0.004 3.996 22 N -0.337 5.337 23 C -0.360 4.360 24 H 0.089 0.911 25 C -0.225 4.225 26 N -0.605 5.605 27 Si 0.767 3.233 28 H -0.213 1.213 29 H -0.195 1.195 30 H -0.241 1.241 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.250 0.750 37 H 0.162 0.838 38 H 0.203 0.797 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.075 0.925 48 H 0.094 0.906 49 H 0.036 0.964 50 H 0.064 0.936 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.166 17.846 -17.181 29.581 hybrid contribution 0.985 0.145 1.067 1.460 sum 17.152 17.991 -16.113 29.623 Atomic orbital electron populations 1.21743 0.94188 1.01476 1.01354 1.20611 0.94618 0.93399 0.85561 0.94752 1.22179 0.92587 1.02944 0.98856 1.20909 0.93975 0.82209 0.97750 0.89250 1.46032 1.13837 1.12789 1.61856 1.18234 0.81923 0.87183 0.77428 1.90717 1.62141 1.44159 1.47810 1.20934 0.93380 0.93007 1.01629 1.22208 0.94492 0.98704 0.98389 1.20222 0.97984 0.91347 0.95863 1.21167 0.94342 0.98218 0.96480 1.23370 0.93920 0.93198 0.96411 1.67444 1.37995 1.01066 1.12683 1.20579 0.96934 0.89779 1.04345 1.21599 0.94186 1.01948 0.98147 1.21579 1.02717 0.92768 0.98393 1.20587 0.89908 0.99307 1.02321 1.22263 0.99977 0.99781 0.95679 1.21217 0.84845 0.96584 0.96950 1.44586 1.01826 1.66314 1.21010 1.18917 0.95907 1.35178 0.86004 0.91083 1.25844 1.00138 1.00263 0.96297 1.69911 1.43290 1.43230 1.04026 0.86113 0.81123 0.80494 0.75537 1.21268 1.19468 1.24114 0.94008 0.90045 0.93524 0.88744 0.90042 0.75047 0.83813 0.79697 0.88309 0.88745 0.89159 0.92007 0.91243 0.89443 0.89370 0.89305 0.92504 0.90578 0.96370 0.93580 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 7.95 71.98 0.57 -3.94 16 2 C 0.16 5.98 3.19 44.83 0.14 6.12 16 3 H 0.03 1.25 6.64 -2.39 -0.02 1.23 16 4 C -0.13 -3.81 5.05 30.53 0.15 -3.65 16 5 C 0.16 5.07 2.78 45.02 0.13 5.19 16 6 H 0.09 2.81 7.57 -2.39 -0.02 2.80 16 7 N -0.69 -22.62 4.25 -444.97 -1.89 -24.51 16 8 C 0.57 19.08 7.78 86.89 0.68 19.76 16 9 O -0.57 -21.44 15.99 -3.76 -0.06 -21.50 16 10 C 0.05 1.34 6.75 41.88 0.28 1.62 16 11 C -0.12 -2.85 9.26 22.68 0.21 -2.64 16 12 C -0.05 -0.85 5.74 -19.88 -0.11 -0.96 16 13 C -0.10 -1.63 5.75 -19.80 -0.11 -1.75 16 14 C 0.09 1.86 10.79 84.98 0.92 2.78 16 15 N -0.48 -13.17 9.55 -184.70 -1.76 -14.94 16 16 C -0.08 -0.70 5.71 29.72 0.17 -0.53 16 17 C -0.12 -0.88 5.96 30.63 0.18 -0.69 16 18 C -0.12 -0.89 5.98 30.63 0.18 -0.70 16 19 C -0.08 -0.99 5.72 29.68 0.17 -0.82 16 20 C -0.14 -5.19 5.77 30.67 0.18 -5.01 16 21 C 0.13 5.82 3.94 86.36 0.34 6.16 16 22 N -0.61 -28.39 2.73 -676.02 -1.85 -30.24 16 23 C -0.23 -12.76 9.00 84.03 0.76 -12.00 16 24 H 0.07 4.18 6.44 -2.91 -0.02 4.16 16 25 C -0.03 -1.83 5.26 84.86 0.45 -1.39 16 26 N -0.96 -60.67 13.97 21.65 0.30 -60.36 16 27 Si 0.94 48.76 24.34 68.60 1.67 50.43 16 28 H -0.29 -14.51 6.42 99.48 0.64 -13.87 16 29 H -0.27 -13.70 6.90 99.48 0.69 -13.02 16 30 H -0.31 -16.45 7.11 99.48 0.71 -15.75 16 31 H 0.04 1.63 7.63 -2.39 -0.02 1.61 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.05 1.71 7.44 -2.39 -0.02 1.69 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.41 13.32 6.21 -92.71 -0.58 12.75 16 37 H 0.14 3.45 7.64 -2.91 -0.02 3.43 16 38 H 0.19 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.09 0.66 8.13 -2.39 -0.02 0.64 16 41 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.06 0.54 8.11 -2.38 -0.02 0.52 16 43 H 0.07 0.53 8.10 -2.39 -0.02 0.51 16 44 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 45 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 49 H 0.02 0.84 6.75 -2.39 -0.02 0.83 16 50 H 0.05 2.32 4.60 -2.39 -0.01 2.31 16 51 H 0.26 15.77 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -73.05 386.69 1.96 -71.09 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.27 Total: 22.48 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 5.28 Total: 7.54 kcal Atomic # 7 Polarization: -124.84 SS G_CDS: -5.20 Total: -130.05 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.06 Total: -21.50 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 1.67 Total: 50.43 kcal Total: -73.05 1.96 -71.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947529701.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.265 kcal (2) G-P(sol) polarization free energy of solvation -73.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds