Wall clock time and date at job start Wed Apr 1 2020 03:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.70234 * 2 1 4 4 C 1.53183 * 109.58696 * 120.36159 * 2 1 3 5 5 C 1.53041 * 109.31745 * 65.15096 * 4 2 1 6 6 H 1.08995 * 109.44850 * 301.35290 * 5 4 2 7 7 N 1.46497 * 109.46203 * 181.38359 * 5 4 2 8 8 C 1.34784 * 119.99554 * 154.93413 * 7 5 4 9 9 O 1.21594 * 120.00222 * 0.02562 * 8 7 5 10 10 C 1.47521 * 119.99447 * 180.02562 * 8 7 5 11 11 C 1.39809 * 120.21705 * 359.97438 * 10 8 7 12 12 C 1.37394 * 120.12577 * 180.36377 * 11 10 8 13 13 C 1.39765 * 120.39307 * 359.56022 * 12 11 10 14 14 C 1.39307 * 119.29048 * 0.20609 * 13 12 11 15 15 C 1.37421 * 120.65651 * 0.12497 * 14 13 12 16 16 C 1.51610 * 107.87678 * 180.22936 * 14 13 12 17 17 C 1.54604 * 102.71586 * 16.17960 * 16 14 13 18 18 N 1.39454 * 129.74190 * 179.89722 * 13 12 11 19 19 C 1.46897 * 111.00266 * 284.02391 * 18 13 12 20 20 C 1.53043 * 109.53550 * 61.36607 * 5 4 2 21 21 C 1.53197 * 109.31201 * 298.63403 * 20 5 4 22 22 N 1.46925 * 109.58531 * 239.64942 * 2 1 3 23 23 C 1.36944 * 120.62907 * 113.79714 * 22 2 1 24 24 H 1.07999 * 119.99756 * 27.70225 * 23 22 2 25 25 C 1.38813 * 120.00020 * 207.69654 * 23 22 2 26 26 N 1.31623 * 119.99871 * 17.35815 * 25 23 22 27 27 Si 1.86798 * 120.00196 * 197.35663 * 25 23 22 28 28 H 1.48504 * 109.47064 * 90.00007 * 27 25 23 29 29 H 1.48498 * 109.47288 * 210.00048 * 27 25 23 30 30 H 1.48493 * 109.47059 * 330.00485 * 27 25 23 31 31 H 1.09003 * 109.46996 * 180.34571 * 1 2 3 32 32 H 1.08992 * 109.47374 * 300.35019 * 1 2 3 33 33 H 1.09004 * 109.47429 * 60.35344 * 1 2 3 34 34 H 1.09004 * 109.49810 * 305.20078 * 4 2 1 35 35 H 1.09005 * 109.49654 * 185.10675 * 4 2 1 36 36 H 0.96991 * 120.00185 * 334.93641 * 7 5 4 37 37 H 1.08000 * 119.93857 * 0.15808 * 11 10 8 38 38 H 1.07994 * 119.79912 * 179.74981 * 12 11 10 39 39 H 1.07999 * 120.01664 * 179.79994 * 15 14 13 40 40 H 1.09000 * 110.76721 * 257.86581 * 16 14 13 41 41 H 1.09006 * 110.91914 * 134.55471 * 16 14 13 42 42 H 1.09003 * 110.77210 * 216.10575 * 17 16 14 43 43 H 1.08999 * 110.93853 * 92.75565 * 17 16 14 44 44 H 1.09003 * 109.47138 * 59.87652 * 19 18 13 45 45 H 1.09004 * 109.47070 * 179.87179 * 19 18 13 46 46 H 1.08996 * 109.47219 * 299.86967 * 19 18 13 47 47 H 1.08995 * 109.50334 * 58.58525 * 20 5 4 48 48 H 1.08997 * 109.49900 * 178.69010 * 20 5 4 49 49 H 1.08998 * 109.58720 * 174.41982 * 21 20 5 50 50 H 1.08993 * 109.58967 * 294.71034 * 21 20 5 51 51 H 0.97000 * 119.99676 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7295 1.2453 5 6 1.6415 -2.2042 1.1699 6 1 0.5566 -2.2814 1.0990 7 7 2.1024 -2.8979 2.3751 8 6 1.4742 -4.0155 2.7911 9 8 0.5253 -4.4481 2.1660 10 6 1.9381 -4.7138 4.0050 11 6 3.0291 -4.2206 4.7269 12 6 3.4642 -4.8766 5.8530 13 6 2.8162 -6.0348 6.2914 14 6 1.7266 -6.5200 5.5718 15 6 1.2897 -5.8733 4.4407 16 6 1.2252 -7.7680 6.2716 17 6 1.8898 -7.6677 7.6639 18 7 3.0893 -6.8470 7.3916 19 6 4.2620 -7.6956 7.1414 20 6 2.2801 -2.8464 -0.0637 21 6 1.7691 -2.1409 -1.3240 22 7 2.0225 -0.6994 -1.1945 23 6 2.7044 -0.0206 -2.1690 24 1 3.2696 0.8642 -1.9160 25 6 2.6692 -0.4699 -3.4820 26 7 1.7364 -1.3169 -3.8629 27 14 3.9454 0.1276 -4.7082 28 1 5.1162 -0.7857 -4.6888 29 1 3.3535 0.1447 -6.0700 30 1 4.3812 1.4987 -4.3406 31 1 -0.3633 -1.0277 0.0062 32 1 -0.3634 0.5192 0.8867 33 1 -0.3634 0.5083 -0.8931 34 1 1.6075 -0.2786 2.1367 35 1 3.1297 -0.6504 1.2912 36 1 2.8596 -2.5530 2.8736 37 1 3.5329 -3.3241 4.3970 38 1 4.3099 -4.4932 6.4044 39 1 0.4459 -6.2603 3.8889 40 1 1.5576 -8.6645 5.7484 41 1 0.1388 -7.7546 6.3602 42 1 2.1717 -8.6550 8.0297 43 1 1.2319 -7.1671 8.3744 44 1 5.1304 -7.0667 6.9449 45 1 4.4541 -8.3171 8.0160 46 1 4.0719 -8.3327 6.2777 47 1 3.3640 -2.7474 -0.0056 48 1 2.0123 -3.9022 -0.1041 49 1 2.2944 -2.5273 -2.1974 50 1 0.6992 -2.3176 -1.4333 51 1 1.7121 -1.6311 -4.7803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947899225.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:06 Heat of formation + Delta-G solvation = 6.664304 kcal Electronic energy + Delta-G solvation = -29998.838163 eV Core-core repulsion = 26090.736420 eV Total energy + Delta-G solvation = -3908.101743 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.97015 -40.97335 -39.38719 -37.50218 -36.07887 -34.35376 -33.43817 -32.57452 -31.71280 -30.79718 -29.91249 -28.50725 -27.02977 -26.21508 -24.83155 -23.67419 -23.46515 -22.88200 -21.99521 -21.20261 -20.07497 -19.00609 -18.24661 -17.67259 -17.45006 -16.75756 -16.59732 -16.38109 -15.99491 -15.87037 -15.51613 -15.32068 -15.04360 -14.78271 -14.67909 -14.36829 -14.26366 -14.13931 -13.94798 -13.91706 -13.73653 -13.36795 -13.15828 -13.01371 -12.90832 -12.74371 -12.66417 -12.54951 -12.29954 -12.14487 -12.03502 -11.98994 -11.89813 -11.76878 -11.49589 -11.20338 -10.90484 -10.56267 -10.53412 -10.02870 -9.93341 -8.98209 -8.68778 -7.84844 -5.29868 -0.26675 0.31653 1.47837 1.49228 1.57921 1.76146 2.12285 2.52532 2.61306 2.77123 3.30488 3.51109 3.60658 3.69949 3.78295 3.86346 3.96980 4.04624 4.09213 4.17896 4.23733 4.30384 4.44728 4.45822 4.50207 4.52174 4.57057 4.70982 4.71989 4.75492 4.78095 4.84832 4.88849 4.92831 4.96960 5.05461 5.09281 5.12672 5.16349 5.16829 5.27858 5.31951 5.34056 5.44510 5.48430 5.54350 5.58973 5.69277 5.76022 5.85636 6.14641 6.41547 6.57164 7.16246 7.22932 7.88334 8.40771 9.21803 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022918 B = 0.002121 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.473441 B =13195.857783 C =13411.854974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.160 3.840 3 H 0.073 0.927 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.063 0.937 7 N -0.704 5.704 8 C 0.555 3.445 9 O -0.587 6.587 10 C -0.162 4.162 11 C -0.059 4.059 12 C -0.120 4.120 13 C 0.111 3.889 14 C -0.162 4.162 15 C -0.045 4.045 16 C -0.109 4.109 17 C 0.050 3.950 18 N -0.506 5.506 19 C 0.025 3.975 20 C -0.132 4.132 21 C 0.185 3.815 22 N -0.599 5.599 23 C -0.255 4.255 24 H 0.074 0.926 25 C -0.055 4.055 26 N -0.937 5.937 27 Si 0.966 3.034 28 H -0.287 1.287 29 H -0.300 1.300 30 H -0.265 1.265 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.028 0.972 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.413 0.587 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.118 0.882 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.032 0.968 47 H 0.061 0.939 48 H 0.040 0.960 49 H 0.053 0.947 50 H -0.010 1.010 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.313 -10.855 27.727 30.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.091 0.909 4 C -0.157 4.157 5 C 0.057 3.943 6 H 0.081 0.919 7 N -0.355 5.355 8 C 0.344 3.656 9 O -0.469 6.469 10 C -0.166 4.166 11 C -0.078 4.078 12 C -0.140 4.140 13 C 0.014 3.986 14 C -0.164 4.164 15 C -0.064 4.064 16 C -0.147 4.147 17 C -0.076 4.076 18 N -0.223 5.223 19 C -0.120 4.120 20 C -0.172 4.172 21 C 0.058 3.942 22 N -0.321 5.321 23 C -0.385 4.385 24 H 0.091 0.909 25 C -0.250 4.250 26 N -0.584 5.584 27 Si 0.795 3.205 28 H -0.214 1.214 29 H -0.227 1.227 30 H -0.189 1.189 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.251 0.749 37 H 0.175 0.825 38 H 0.172 0.828 39 H 0.136 0.864 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.129 0.871 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.115 0.885 46 H 0.051 0.949 47 H 0.080 0.920 48 H 0.059 0.941 49 H 0.071 0.929 50 H 0.008 0.992 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.808 -10.914 27.626 30.091 hybrid contribution 0.102 -0.266 -2.060 2.080 sum 4.910 -11.179 25.566 28.332 Atomic orbital electron populations 1.22197 0.98297 1.00244 1.00596 1.20719 0.92135 0.95597 0.86245 0.90913 1.22145 1.02070 0.92550 0.98961 1.20754 0.98326 0.92223 0.83026 0.91911 1.45936 1.34922 1.26534 1.28115 1.18587 0.82035 0.80522 0.84438 1.90765 1.30283 1.67041 1.58816 1.19736 1.00684 0.98896 0.97246 1.21311 0.93590 0.99440 0.93430 1.20667 1.02113 0.93890 0.97338 1.20039 0.94680 0.94383 0.89500 1.21163 1.00558 0.98973 0.95757 1.20448 0.98209 0.93151 0.94629 1.21764 1.02672 0.94378 0.95881 1.23326 0.89838 0.98581 0.95902 1.59985 1.07213 1.20981 1.34087 1.22584 0.91357 0.96251 1.01833 1.22328 1.00377 0.98147 0.96372 1.20405 0.95422 0.83777 0.94576 1.44384 1.64113 1.03524 1.20095 1.19552 1.21601 1.10042 0.87310 0.90863 1.25828 0.99569 1.00862 0.98744 1.70216 1.33671 1.37648 1.16828 0.85275 0.78786 0.78511 0.77938 1.21432 1.22705 1.18919 0.94835 0.90664 0.95233 0.88940 0.90505 0.74908 0.82464 0.82762 0.86422 0.89266 0.88597 0.87067 0.88728 0.90506 0.88487 0.94911 0.91984 0.94101 0.92851 0.99222 0.94361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.91 9.03 71.98 0.65 -5.26 16 2 C 0.16 6.26 3.29 44.97 0.15 6.41 16 3 H 0.07 2.75 7.93 -2.39 -0.02 2.73 16 4 C -0.12 -3.59 5.02 30.67 0.15 -3.44 16 5 C 0.16 5.54 2.21 45.02 0.10 5.64 16 6 H 0.06 2.52 5.92 -2.39 -0.01 2.50 16 7 N -0.70 -19.35 5.03 -445.58 -2.24 -21.59 16 8 C 0.55 17.51 7.73 86.69 0.67 18.18 16 9 O -0.59 -24.13 16.01 -4.01 -0.06 -24.20 16 10 C -0.16 -4.03 5.88 -20.07 -0.12 -4.15 16 11 C -0.06 -1.03 9.51 22.45 0.21 -0.82 16 12 C -0.12 -1.91 10.05 22.44 0.23 -1.68 16 13 C 0.11 1.95 5.57 38.56 0.21 2.17 16 14 C -0.16 -3.18 6.21 -19.51 -0.12 -3.31 16 15 C -0.04 -1.11 9.58 22.46 0.22 -0.89 16 16 C -0.11 -1.44 6.98 30.68 0.21 -1.23 16 17 C 0.05 0.50 7.00 86.66 0.61 1.11 16 18 N -0.51 -6.90 5.30 -713.38 -3.78 -10.69 16 19 C 0.02 0.24 9.28 127.69 1.19 1.42 16 20 C -0.13 -5.42 5.65 30.67 0.17 -5.25 16 21 C 0.18 9.37 4.89 86.36 0.42 9.79 16 22 N -0.60 -29.58 2.70 -675.23 -1.82 -31.40 16 23 C -0.25 -13.79 9.59 84.03 0.81 -12.98 16 24 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 25 C -0.05 -3.09 4.91 84.86 0.42 -2.67 16 26 N -0.94 -56.83 11.19 21.65 0.24 -56.59 16 27 Si 0.97 45.16 29.59 68.60 2.03 47.19 16 28 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 29 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 30 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 31 H 0.03 1.37 5.73 -2.39 -0.01 1.36 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.41 8.07 6.63 -92.71 -0.61 7.45 16 37 H 0.16 1.85 6.40 -2.91 -0.02 1.83 16 38 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 39 H 0.12 3.22 7.65 -2.91 -0.02 3.20 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.10 1.13 8.14 -2.38 -0.02 1.12 16 42 H 0.11 0.58 7.76 -2.39 -0.02 0.56 16 43 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.10 0.55 8.10 -2.39 -0.02 0.53 16 46 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 48 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.05 3.07 6.04 -2.39 -0.01 3.05 16 50 H -0.01 -0.58 7.51 -2.39 -0.02 -0.59 16 51 H 0.25 14.63 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -74.16 397.02 0.85 -73.31 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.32 Total: 20.91 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 6.18 Total: 3.05 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -7.61 Total: -120.26 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.06 Total: -24.20 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -74.16 0.85 -73.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947899225.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.969 kcal (2) G-P(sol) polarization free energy of solvation -74.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds