Wall clock time and date at job start Wed Apr 1 2020 03:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.58176 * 2 1 4 4 C 1.53191 * 109.58354 * 239.71822 * 2 1 3 5 5 C 1.53044 * 109.31007 * 185.57682 * 4 2 1 6 6 H 1.09009 * 109.46071 * 301.36105 * 5 4 2 7 7 N 1.46499 * 109.46104 * 181.38687 * 5 4 2 8 8 C 1.34773 * 120.00358 * 154.99710 * 7 5 4 9 9 O 1.21291 * 119.99655 * 0.02562 * 8 7 5 10 10 C 1.50702 * 120.00477 * 179.97438 * 8 7 5 11 11 N 1.46899 * 109.47356 * 186.02779 * 10 8 7 12 12 C 1.47902 * 110.99513 * 76.01881 * 11 10 8 13 13 C 1.54608 * 102.63173 * 94.68069 * 12 11 10 14 14 C 1.51577 * 102.81145 * 25.59675 * 13 12 11 15 15 C 1.37921 * 131.56101 * 163.78963 * 14 13 12 16 16 C 1.38300 * 120.07983 * 180.27765 * 15 14 13 17 17 C 1.38303 * 119.88280 * 0.02562 * 16 15 14 18 18 C 1.37913 * 120.26701 * 359.89656 * 17 16 15 19 19 C 1.38958 * 107.95018 * 343.80270 * 14 13 12 20 20 C 1.53041 * 109.53887 * 61.36675 * 5 4 2 21 21 C 1.53194 * 109.31021 * 298.63412 * 20 5 4 22 22 N 1.46921 * 108.77626 * 54.63566 * 21 20 5 23 23 C 1.36940 * 120.63202 * 126.36621 * 22 21 20 24 24 H 1.08004 * 120.00043 * 209.86739 * 23 22 21 25 25 C 1.38807 * 119.99715 * 29.87312 * 23 22 21 26 26 N 1.31612 * 120.00275 * 15.09204 * 25 23 22 27 27 Si 1.86804 * 119.99897 * 195.09248 * 25 23 22 28 28 H 1.48497 * 109.47007 * 359.97438 * 27 25 23 29 29 H 1.48493 * 109.47255 * 119.99867 * 27 25 23 30 30 H 1.48504 * 109.47205 * 240.00142 * 27 25 23 31 31 H 1.08995 * 109.46876 * 180.28234 * 1 2 3 32 32 H 1.08999 * 109.46974 * 300.28282 * 1 2 3 33 33 H 1.08998 * 109.47079 * 60.28163 * 1 2 3 34 34 H 1.09003 * 109.49689 * 65.62767 * 4 2 1 35 35 H 1.08993 * 109.52644 * 305.54373 * 4 2 1 36 36 H 0.97000 * 119.99945 * 335.00444 * 7 5 4 37 37 H 1.08999 * 109.46728 * 66.02837 * 10 8 7 38 38 H 1.09000 * 109.47036 * 306.03201 * 10 8 7 39 39 H 1.09008 * 110.77868 * 212.96250 * 12 11 10 40 40 H 1.08991 * 110.78368 * 336.20498 * 12 11 10 41 41 H 1.08997 * 110.74287 * 143.92582 * 13 12 11 42 42 H 1.08999 * 110.74003 * 267.08524 * 13 12 11 43 43 H 1.07997 * 119.95739 * 0.29132 * 15 14 13 44 44 H 1.07997 * 120.05977 * 179.97438 * 16 15 14 45 45 H 1.08003 * 119.87081 * 179.87039 * 17 16 15 46 46 H 1.08003 * 119.90268 * 179.97438 * 18 17 16 47 47 H 1.09003 * 109.49587 * 58.58490 * 20 5 4 48 48 H 1.08996 * 109.49427 * 178.68440 * 20 5 4 49 49 H 1.09000 * 109.58572 * 294.84740 * 21 20 5 50 50 H 1.09001 * 109.58500 * 174.41904 * 21 20 5 51 51 H 0.97006 * 120.00056 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 -1.2464 5 6 3.5675 -0.8465 -1.1713 6 1 4.0062 0.1488 -1.0989 7 7 4.0652 -1.5127 -2.3774 8 6 5.3294 -1.2985 -2.7926 9 8 6.0552 -0.5546 -2.1674 10 6 5.8416 -1.9843 -4.0329 11 7 7.2751 -1.7046 -4.1906 12 6 8.0792 -2.5098 -3.2459 13 6 8.4677 -3.7409 -4.0966 14 6 8.4135 -3.2019 -5.5123 15 6 8.9217 -3.6907 -6.6976 16 6 8.7339 -2.9886 -7.8742 17 6 8.0357 -1.7948 -7.8604 18 6 7.5241 -1.3025 -6.6781 19 6 7.7054 -2.0065 -5.4885 20 6 3.9570 -1.6658 0.0613 21 6 3.4651 -0.9486 1.3225 22 7 2.0227 -0.7011 1.1936 23 6 1.1537 -1.1163 2.1671 24 1 0.1399 -1.3836 1.9078 25 6 1.5759 -1.1936 3.4871 26 7 2.6904 -0.5994 3.8575 27 14 0.5623 -2.1409 4.7380 28 1 -0.6369 -2.7114 4.0734 29 1 1.3819 -3.2396 5.3093 30 1 0.1358 -1.2244 5.8258 31 1 -0.3633 -1.0276 0.0051 32 1 -0.3633 0.5182 0.8874 33 1 -0.3633 0.5094 -0.8925 34 1 1.7660 -0.1640 -2.1370 35 1 1.6030 -1.7236 -1.2941 36 1 3.4849 -2.1078 -2.8772 37 1 5.3009 -1.6123 -4.9032 38 1 5.6890 -3.0597 -3.9428 39 1 8.9672 -1.9624 -2.9298 40 1 7.4816 -2.8051 -2.3836 41 1 9.4745 -4.0782 -3.8503 42 1 7.7475 -4.5475 -3.9598 43 1 9.4669 -4.6229 -6.7069 44 1 9.1324 -3.3715 -8.8021 45 1 7.8909 -1.2457 -8.7790 46 1 6.9801 -0.3694 -6.6740 47 1 3.4983 -2.6529 0.0018 48 1 5.0412 -1.7697 0.1013 49 1 3.9904 0.0002 1.4316 50 1 3.6518 -1.5746 2.1951 51 1 2.9856 -0.6538 4.7800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948036536.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:27 Heat of formation + Delta-G solvation = 29.817691 kcal Electronic energy + Delta-G solvation = -30036.628046 eV Core-core repulsion = 26129.530310 eV Total energy + Delta-G solvation = -3907.097736 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.17227 -39.49909 -37.72298 -36.76362 -34.50856 -32.74650 -32.38890 -31.41709 -30.36212 -29.46211 -29.12920 -26.95998 -26.24022 -24.64603 -23.31553 -22.18859 -21.60819 -21.48656 -20.70370 -20.00312 -19.16638 -17.20455 -17.00710 -16.45342 -16.25030 -15.83117 -15.43696 -15.32085 -15.07928 -14.77355 -14.08321 -13.92480 -13.87438 -13.68296 -13.52771 -13.27172 -13.20642 -12.85532 -12.82294 -12.68605 -12.53432 -12.09464 -11.81188 -11.59839 -11.44695 -11.21434 -11.15032 -11.10247 -10.91156 -10.89071 -10.66032 -10.29229 -10.15344 -10.04850 -10.01420 -9.72641 -9.59602 -9.23178 -9.09500 -8.68085 -8.41813 -8.13451 -6.62741 -5.76585 -3.21199 1.00459 1.09625 2.80560 3.04122 3.36873 3.44786 3.44926 3.46408 3.63248 4.29910 4.47241 4.49189 4.69492 4.70369 4.80145 4.84421 4.95764 5.04036 5.14047 5.19612 5.28733 5.31758 5.38992 5.43308 5.47449 5.58026 5.60324 5.66307 5.78642 5.84900 6.00399 6.07156 6.14480 6.16090 6.22279 6.26611 6.32039 6.42399 6.43579 6.45060 6.51954 6.59494 6.65810 6.79489 6.91554 7.00558 7.04330 7.10490 7.39011 7.68737 7.75015 7.83368 8.45393 8.48179 9.23170 9.86667 10.44140 11.32023 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.002135 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.736768 B =13111.802687 C =13767.924656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.133 4.133 5 C 0.152 3.848 6 H 0.081 0.919 7 N -0.727 5.727 8 C 0.507 3.493 9 O -0.517 6.517 10 C 0.039 3.961 11 N -0.473 5.473 12 C 0.058 3.942 13 C -0.114 4.114 14 C -0.138 4.138 15 C -0.090 4.090 16 C -0.134 4.134 17 C -0.105 4.105 18 C -0.111 4.111 19 C 0.093 3.907 20 C -0.145 4.145 21 C 0.175 3.825 22 N -0.587 5.587 23 C -0.250 4.250 24 H 0.070 0.930 25 C 0.002 3.998 26 N -0.902 5.902 27 Si 0.900 3.100 28 H -0.278 1.278 29 H -0.290 1.290 30 H -0.291 1.291 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.393 0.607 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.053 0.947 48 H 0.051 0.949 49 H 0.020 0.980 50 H 0.088 0.912 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.869 -6.733 -23.025 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.049 3.951 6 H 0.099 0.901 7 N -0.379 5.379 8 C 0.291 3.709 9 O -0.392 6.392 10 C -0.090 4.090 11 N -0.189 5.189 12 C -0.068 4.068 13 C -0.152 4.152 14 C -0.141 4.141 15 C -0.109 4.109 16 C -0.153 4.153 17 C -0.123 4.123 18 C -0.131 4.131 19 C -0.003 4.003 20 C -0.186 4.186 21 C 0.049 3.951 22 N -0.311 5.311 23 C -0.380 4.380 24 H 0.088 0.912 25 C -0.197 4.197 26 N -0.546 5.546 27 Si 0.730 3.270 28 H -0.203 1.203 29 H -0.217 1.217 30 H -0.218 1.218 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.226 0.774 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.138 0.862 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.143 0.857 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.038 0.962 50 H 0.106 0.894 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.483 -5.599 -22.203 24.784 hybrid contribution -0.755 -1.555 0.303 1.755 sum 8.728 -7.154 -21.900 24.637 Atomic orbital electron populations 1.21791 0.95785 1.01401 1.00289 1.20361 0.93060 0.93587 0.86666 0.95570 1.22373 0.93752 1.01566 0.99634 1.21022 0.94160 0.96767 0.83134 0.90107 1.46312 1.13181 1.49109 1.29250 1.20342 0.82251 0.82433 0.85834 1.90737 1.55971 1.36186 1.56288 1.22110 0.88698 0.99721 0.98438 1.59641 1.02546 1.55278 1.01430 1.23152 0.98494 0.90842 0.94362 1.21759 1.03263 0.99070 0.91093 1.21045 1.02228 0.95397 0.95395 1.20404 0.99464 0.99820 0.91167 1.21053 1.00502 0.95924 0.97772 1.20937 0.97767 0.96216 0.97415 1.20556 1.02224 0.99901 0.90438 1.19584 0.97945 0.93002 0.89808 1.22559 0.99600 0.99520 0.96901 1.20732 0.83262 0.97294 0.93803 1.44165 1.02975 1.64782 1.19168 1.19195 0.95180 1.37514 0.86094 0.91239 1.25122 0.97878 0.99634 0.97037 1.70029 1.23851 1.44059 1.16651 0.86265 0.79621 0.79546 0.81580 1.20296 1.21659 1.21771 0.92787 0.91883 0.94327 0.92732 0.91869 0.77379 0.87856 0.91239 0.88862 0.89467 0.89397 0.90050 0.86220 0.85815 0.85584 0.85715 0.92787 0.93012 0.96169 0.89382 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.95 37.16 0.30 -2.17 16 2 C 0.17 3.45 3.50 -67.60 -0.24 3.22 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.19 4.84 -26.61 -0.13 -2.32 16 5 C 0.15 2.61 2.41 -67.89 -0.16 2.45 16 6 H 0.08 1.59 7.58 -51.92 -0.39 1.20 16 7 N -0.73 -9.82 5.08 -53.76 -0.27 -10.10 16 8 C 0.51 7.31 7.26 -10.99 -0.08 7.23 16 9 O -0.52 -9.78 15.66 5.55 0.09 -9.69 16 10 C 0.04 0.43 5.23 -4.98 -0.03 0.40 16 11 N -0.47 -5.77 4.59 -170.38 -0.78 -6.55 16 12 C 0.06 0.65 6.37 -2.43 -0.02 0.63 16 13 C -0.11 -1.00 6.93 -26.61 -0.18 -1.19 16 14 C -0.14 -1.36 6.23 -104.04 -0.65 -2.01 16 15 C -0.09 -0.75 10.03 -39.67 -0.40 -1.15 16 16 C -0.13 -1.02 10.06 -39.53 -0.40 -1.42 16 17 C -0.10 -0.83 10.02 -39.68 -0.40 -1.23 16 18 C -0.11 -1.08 10.05 -39.26 -0.39 -1.47 16 19 C 0.09 1.02 5.49 -83.41 -0.46 0.56 16 20 C -0.15 -2.85 5.65 -26.61 -0.15 -3.00 16 21 C 0.18 4.22 5.28 -3.71 -0.02 4.20 16 22 N -0.59 -14.28 2.99 -164.77 -0.49 -14.78 16 23 C -0.25 -6.61 8.58 -15.06 -0.13 -6.74 16 24 H 0.07 1.79 6.23 -52.48 -0.33 1.46 16 25 C 0.00 0.05 4.95 -17.44 -0.09 -0.03 16 26 N -0.90 -26.13 11.21 55.49 0.62 -25.51 16 27 Si 0.90 21.47 29.58 -169.99 -5.03 16.45 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 31 H 0.05 0.99 7.40 -51.93 -0.38 0.60 16 32 H 0.06 1.25 7.67 -51.93 -0.40 0.85 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.39 4.09 8.60 -40.82 -0.35 3.73 16 37 H 0.10 0.96 7.95 -51.93 -0.41 0.55 16 38 H 0.07 0.63 7.95 -51.93 -0.41 0.22 16 39 H 0.09 1.07 8.14 -51.92 -0.42 0.64 16 40 H 0.09 1.02 7.32 -51.93 -0.38 0.64 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 46 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 47 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.09 2.37 6.13 -51.93 -0.32 2.05 16 51 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 LS Contribution 400.04 15.07 6.03 6.03 Total: -1.00 -32.22 400.04 -11.89 -44.11 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -8.43 Total: 4.08 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -3.62 Total: -4.04 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.92 Total: -56.93 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.22 -11.89 -44.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948036536.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.930 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds