Wall clock time and date at job start Wed Apr 1 2020 03:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.58176 * 2 1 4 4 C 1.53191 * 109.58354 * 239.71822 * 2 1 3 5 5 C 1.53044 * 109.31007 * 185.57682 * 4 2 1 6 6 H 1.09009 * 109.46071 * 301.36105 * 5 4 2 7 7 N 1.46499 * 109.46104 * 181.38687 * 5 4 2 8 8 C 1.34773 * 120.00358 * 154.99710 * 7 5 4 9 9 O 1.21291 * 119.99655 * 0.02562 * 8 7 5 10 10 C 1.50702 * 120.00477 * 179.97438 * 8 7 5 11 11 N 1.46899 * 109.47356 * 186.02779 * 10 8 7 12 12 C 1.47902 * 110.99513 * 76.01881 * 11 10 8 13 13 C 1.54608 * 102.63173 * 94.68069 * 12 11 10 14 14 C 1.51577 * 102.81145 * 25.59675 * 13 12 11 15 15 C 1.37921 * 131.56101 * 163.78963 * 14 13 12 16 16 C 1.38300 * 120.07983 * 180.27765 * 15 14 13 17 17 C 1.38303 * 119.88280 * 0.02562 * 16 15 14 18 18 C 1.37913 * 120.26701 * 359.89656 * 17 16 15 19 19 C 1.38958 * 107.95018 * 343.80270 * 14 13 12 20 20 C 1.53041 * 109.53887 * 61.36675 * 5 4 2 21 21 C 1.53194 * 109.31021 * 298.63412 * 20 5 4 22 22 N 1.46921 * 108.77626 * 54.63566 * 21 20 5 23 23 C 1.36940 * 120.63202 * 126.36621 * 22 21 20 24 24 H 1.08004 * 120.00043 * 209.86739 * 23 22 21 25 25 C 1.38807 * 119.99715 * 29.87312 * 23 22 21 26 26 N 1.31612 * 120.00275 * 15.09204 * 25 23 22 27 27 Si 1.86804 * 119.99897 * 195.09248 * 25 23 22 28 28 H 1.48497 * 109.47007 * 359.97438 * 27 25 23 29 29 H 1.48493 * 109.47255 * 119.99867 * 27 25 23 30 30 H 1.48504 * 109.47205 * 240.00142 * 27 25 23 31 31 H 1.08995 * 109.46876 * 180.28234 * 1 2 3 32 32 H 1.08999 * 109.46974 * 300.28282 * 1 2 3 33 33 H 1.08998 * 109.47079 * 60.28163 * 1 2 3 34 34 H 1.09003 * 109.49689 * 65.62767 * 4 2 1 35 35 H 1.08993 * 109.52644 * 305.54373 * 4 2 1 36 36 H 0.97000 * 119.99945 * 335.00444 * 7 5 4 37 37 H 1.08999 * 109.46728 * 66.02837 * 10 8 7 38 38 H 1.09000 * 109.47036 * 306.03201 * 10 8 7 39 39 H 1.09008 * 110.77868 * 212.96250 * 12 11 10 40 40 H 1.08991 * 110.78368 * 336.20498 * 12 11 10 41 41 H 1.08997 * 110.74287 * 143.92582 * 13 12 11 42 42 H 1.08999 * 110.74003 * 267.08524 * 13 12 11 43 43 H 1.07997 * 119.95739 * 0.29132 * 15 14 13 44 44 H 1.07997 * 120.05977 * 179.97438 * 16 15 14 45 45 H 1.08003 * 119.87081 * 179.87039 * 17 16 15 46 46 H 1.08003 * 119.90268 * 179.97438 * 18 17 16 47 47 H 1.09003 * 109.49587 * 58.58490 * 20 5 4 48 48 H 1.08996 * 109.49427 * 178.68440 * 20 5 4 49 49 H 1.09000 * 109.58572 * 294.84740 * 21 20 5 50 50 H 1.09001 * 109.58500 * 174.41904 * 21 20 5 51 51 H 0.97006 * 120.00056 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 -1.2464 5 6 3.5675 -0.8465 -1.1713 6 1 4.0062 0.1488 -1.0989 7 7 4.0652 -1.5127 -2.3774 8 6 5.3294 -1.2985 -2.7926 9 8 6.0552 -0.5546 -2.1674 10 6 5.8416 -1.9843 -4.0329 11 7 7.2751 -1.7046 -4.1906 12 6 8.0792 -2.5098 -3.2459 13 6 8.4677 -3.7409 -4.0966 14 6 8.4135 -3.2019 -5.5123 15 6 8.9217 -3.6907 -6.6976 16 6 8.7339 -2.9886 -7.8742 17 6 8.0357 -1.7948 -7.8604 18 6 7.5241 -1.3025 -6.6781 19 6 7.7054 -2.0065 -5.4885 20 6 3.9570 -1.6658 0.0613 21 6 3.4651 -0.9486 1.3225 22 7 2.0227 -0.7011 1.1936 23 6 1.1537 -1.1163 2.1671 24 1 0.1399 -1.3836 1.9078 25 6 1.5759 -1.1936 3.4871 26 7 2.6904 -0.5994 3.8575 27 14 0.5623 -2.1409 4.7380 28 1 -0.6369 -2.7114 4.0734 29 1 1.3819 -3.2396 5.3093 30 1 0.1358 -1.2244 5.8258 31 1 -0.3633 -1.0276 0.0051 32 1 -0.3633 0.5182 0.8874 33 1 -0.3633 0.5094 -0.8925 34 1 1.7660 -0.1640 -2.1370 35 1 1.6030 -1.7236 -1.2941 36 1 3.4849 -2.1078 -2.8772 37 1 5.3009 -1.6123 -4.9032 38 1 5.6890 -3.0597 -3.9428 39 1 8.9672 -1.9624 -2.9298 40 1 7.4816 -2.8051 -2.3836 41 1 9.4745 -4.0782 -3.8503 42 1 7.7475 -4.5475 -3.9598 43 1 9.4669 -4.6229 -6.7069 44 1 9.1324 -3.3715 -8.8021 45 1 7.8909 -1.2457 -8.7790 46 1 6.9801 -0.3694 -6.6740 47 1 3.4983 -2.6529 0.0018 48 1 5.0412 -1.7697 0.1013 49 1 3.9904 0.0002 1.4316 50 1 3.6518 -1.5746 2.1951 51 1 2.9856 -0.6538 4.7800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948036536.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:25 Heat of formation + Delta-G solvation = 9.986827 kcal Electronic energy + Delta-G solvation = -30037.487977 eV Core-core repulsion = 26129.530310 eV Total energy + Delta-G solvation = -3907.957667 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.96303 -40.72481 -39.21837 -37.57089 -36.03324 -34.22824 -33.50721 -32.93003 -31.57394 -30.74210 -29.84949 -28.22432 -27.54644 -26.45164 -24.04907 -23.79035 -22.82157 -22.15362 -21.85819 -21.35925 -20.75276 -18.44141 -18.02656 -17.87681 -17.21188 -17.10910 -16.70473 -16.21297 -16.17127 -15.83874 -15.73687 -15.51744 -15.00668 -14.87145 -14.66255 -14.54072 -14.45162 -14.26123 -13.85312 -13.57651 -13.33630 -13.28583 -12.99309 -12.96533 -12.72935 -12.67344 -12.60674 -12.43919 -12.35306 -12.19157 -12.05158 -11.84167 -11.78738 -11.71861 -11.49264 -11.32281 -10.96889 -10.56418 -10.32465 -9.97981 -9.72415 -8.86718 -8.64080 -7.83598 -5.30920 0.35450 0.46316 1.46512 1.48348 1.58455 1.66279 2.02599 2.52560 2.71565 2.82254 3.32682 3.56766 3.61567 3.73905 3.79023 3.90829 3.96323 4.07350 4.12590 4.17293 4.24602 4.27951 4.29553 4.40162 4.53506 4.54068 4.61825 4.68791 4.72090 4.72918 4.76458 4.84078 4.90833 4.96062 4.97186 5.08326 5.11432 5.15540 5.17116 5.39179 5.40729 5.48849 5.51306 5.55593 5.59407 5.61950 5.71240 5.73484 5.79614 5.86337 6.29360 6.43589 6.65268 7.17271 7.34531 7.88918 8.42274 9.23899 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.002135 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.736768 B =13111.802687 C =13767.924656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.008 0.992 4 C -0.117 4.117 5 C 0.164 3.836 6 H 0.051 0.949 7 N -0.711 5.711 8 C 0.507 3.493 9 O -0.568 6.568 10 C 0.050 3.950 11 N -0.497 5.497 12 C 0.055 3.945 13 C -0.104 4.104 14 C -0.149 4.149 15 C -0.095 4.095 16 C -0.132 4.132 17 C -0.105 4.105 18 C -0.125 4.125 19 C 0.069 3.931 20 C -0.128 4.128 21 C 0.184 3.816 22 N -0.603 5.603 23 C -0.246 4.246 24 H 0.081 0.919 25 C -0.059 4.059 26 N -0.942 5.942 27 Si 0.964 3.036 28 H -0.260 1.260 29 H -0.295 1.295 30 H -0.297 1.297 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.415 0.585 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.139 0.861 44 H 0.151 0.849 45 H 0.150 0.850 46 H 0.124 0.876 47 H 0.063 0.937 48 H 0.042 0.958 49 H -0.016 1.016 50 H 0.054 0.946 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.715 -8.748 -26.743 29.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.026 0.974 4 C -0.156 4.156 5 C 0.059 3.941 6 H 0.069 0.931 7 N -0.364 5.364 8 C 0.294 3.706 9 O -0.446 6.446 10 C -0.078 4.078 11 N -0.214 5.214 12 C -0.072 4.072 13 C -0.142 4.142 14 C -0.152 4.152 15 C -0.114 4.114 16 C -0.150 4.150 17 C -0.124 4.124 18 C -0.145 4.145 19 C -0.027 4.027 20 C -0.168 4.168 21 C 0.057 3.943 22 N -0.327 5.327 23 C -0.376 4.376 24 H 0.099 0.901 25 C -0.254 4.254 26 N -0.589 5.589 27 Si 0.793 3.207 28 H -0.184 1.184 29 H -0.222 1.222 30 H -0.224 1.224 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.251 0.749 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.157 0.843 44 H 0.168 0.832 45 H 0.167 0.833 46 H 0.142 0.858 47 H 0.081 0.919 48 H 0.061 0.939 49 H 0.002 0.998 50 H 0.072 0.928 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.288 -7.645 -25.991 28.331 hybrid contribution -0.348 -0.845 1.373 1.650 sum 7.940 -8.490 -24.617 27.224 Atomic orbital electron populations 1.21707 0.93803 1.01743 1.01110 1.20656 0.94780 0.92808 0.86615 0.97398 1.22171 0.92443 1.02290 0.98700 1.20605 0.94905 0.95053 0.83524 0.93052 1.45993 1.13425 1.48959 1.27979 1.21031 0.81733 0.81520 0.86346 1.90725 1.57282 1.38502 1.58088 1.22062 0.88485 1.00507 0.96783 1.59589 1.03118 1.56259 1.02396 1.23081 0.97789 0.91883 0.94427 1.21687 1.04184 0.98044 0.90247 1.21210 1.02530 0.95322 0.96151 1.20712 0.99186 1.00617 0.90859 1.21431 0.99514 0.95445 0.98598 1.21250 0.97001 0.96480 0.97626 1.20739 1.02864 1.00056 0.90813 1.19718 0.99352 0.94127 0.89502 1.22284 0.98864 0.99597 0.96078 1.20427 0.83701 0.95302 0.94835 1.44430 1.02590 1.65464 1.20174 1.19582 0.95665 1.35873 0.86471 0.90147 1.25915 0.99173 1.01161 0.99130 1.70210 1.25911 1.46241 1.16505 0.85243 0.78594 0.77823 0.79045 1.18428 1.22178 1.22438 0.92510 0.94244 0.90429 0.89289 0.90414 0.74856 0.85832 0.88904 0.90320 0.90628 0.88238 0.88937 0.84296 0.83168 0.83269 0.85777 0.91868 0.93884 0.99801 0.92797 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 7.95 71.98 0.57 -3.75 16 2 C 0.16 6.26 3.50 44.98 0.16 6.42 16 3 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 4 C -0.12 -3.54 4.84 30.67 0.15 -3.39 16 5 C 0.16 5.53 2.41 45.02 0.11 5.63 16 6 H 0.05 2.07 7.58 -2.38 -0.02 2.06 16 7 N -0.71 -17.88 5.08 -442.38 -2.25 -20.13 16 8 C 0.51 14.27 7.26 87.66 0.64 14.91 16 9 O -0.57 -22.12 15.66 -3.06 -0.05 -22.17 16 10 C 0.05 1.02 5.23 85.56 0.45 1.46 16 11 N -0.50 -11.93 4.59 -692.96 -3.18 -15.11 16 12 C 0.05 1.24 6.37 86.66 0.55 1.79 16 13 C -0.10 -1.69 6.93 30.68 0.21 -1.48 16 14 C -0.15 -2.68 6.23 -19.49 -0.12 -2.80 16 15 C -0.10 -1.34 10.03 22.21 0.22 -1.12 16 16 C -0.13 -1.58 10.06 22.30 0.22 -1.35 16 17 C -0.11 -1.39 10.02 22.21 0.22 -1.17 16 18 C -0.12 -2.23 10.05 22.48 0.23 -2.01 16 19 C 0.07 1.43 5.49 38.29 0.21 1.64 16 20 C -0.13 -5.11 5.65 30.67 0.17 -4.94 16 21 C 0.18 9.32 5.28 86.36 0.46 9.78 16 22 N -0.60 -29.82 2.99 -675.22 -2.02 -31.84 16 23 C -0.25 -13.09 8.58 84.03 0.72 -12.37 16 24 H 0.08 4.06 6.23 -2.91 -0.02 4.04 16 25 C -0.06 -3.32 4.95 84.86 0.42 -2.90 16 26 N -0.94 -57.23 11.21 21.65 0.24 -56.99 16 27 Si 0.96 44.96 29.58 68.60 2.03 46.99 16 28 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 29 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 30 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 31 H 0.06 1.91 7.40 -2.39 -0.02 1.89 16 32 H 0.04 1.51 7.67 -2.39 -0.02 1.50 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.41 7.13 8.60 -92.71 -0.80 6.33 16 37 H 0.12 1.99 7.95 -2.39 -0.02 1.97 16 38 H 0.09 1.45 7.95 -2.39 -0.02 1.43 16 39 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.08 1.82 7.32 -2.39 -0.02 1.80 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.15 0.97 8.06 -2.91 -0.02 0.94 16 45 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 46 H 0.12 2.12 8.06 -2.91 -0.02 2.09 16 47 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 48 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 49 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 50 H 0.05 3.08 6.13 -2.39 -0.01 3.06 16 51 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 Total: -1.00 -74.57 400.04 0.49 -74.08 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.12 Total: 20.81 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.59 Total: 4.35 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -7.20 Total: -124.06 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.05 Total: -22.17 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -74.57 0.49 -74.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948036536.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.066 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds