Wall clock time and date at job start Wed Apr 1 2020 03:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.58125 * 2 1 4 4 C 1.53192 * 109.58641 * 120.43788 * 2 1 3 5 5 C 1.53040 * 109.31130 * 174.43826 * 4 2 1 6 6 H 1.09000 * 109.45931 * 58.62629 * 5 4 2 7 7 N 1.46495 * 109.46290 * 178.60251 * 5 4 2 8 8 C 1.34769 * 120.00605 * 205.02780 * 7 5 4 9 9 O 1.21283 * 119.99558 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00194 * 180.02562 * 8 7 5 11 11 N 1.46910 * 109.47163 * 174.53909 * 10 8 7 12 12 C 1.47907 * 110.99383 * 284.36742 * 11 10 8 13 13 C 1.54609 * 102.62469 * 265.42453 * 12 11 10 14 14 C 1.51576 * 102.82725 * 334.44897 * 13 12 11 15 15 C 1.37919 * 131.56267 * 196.24696 * 14 13 12 16 16 C 1.38298 * 120.07976 * 179.60747 * 15 14 13 17 17 C 1.38299 * 119.88482 * 359.92509 * 16 15 14 18 18 C 1.37909 * 120.26787 * 0.12839 * 17 16 15 19 19 C 1.38960 * 107.95459 * 16.02059 * 14 13 12 20 20 C 1.53043 * 109.52754 * 298.61945 * 5 4 2 21 21 C 1.53189 * 109.31588 * 61.36732 * 20 5 4 22 22 N 1.46923 * 108.77693 * 305.36946 * 21 20 5 23 23 C 1.36934 * 120.63051 * 233.58250 * 22 21 20 24 24 H 1.08006 * 120.00033 * 151.03896 * 23 22 21 25 25 C 1.38815 * 120.00090 * 331.04108 * 23 22 21 26 26 N 1.31617 * 120.00012 * 160.66455 * 25 23 22 27 27 Si 1.86794 * 119.99845 * 340.66046 * 25 23 22 28 28 H 1.48499 * 109.46969 * 95.04096 * 27 25 23 29 29 H 1.48500 * 109.47256 * 215.04067 * 27 25 23 30 30 H 1.48500 * 109.47333 * 335.04206 * 27 25 23 31 31 H 1.09004 * 109.47183 * 180.28221 * 1 2 3 32 32 H 1.09003 * 109.47365 * 300.27873 * 1 2 3 33 33 H 1.08998 * 109.47303 * 60.28232 * 1 2 3 34 34 H 1.09002 * 109.50391 * 54.48304 * 4 2 1 35 35 H 1.09000 * 109.48808 * 294.38367 * 4 2 1 36 36 H 0.97003 * 119.99638 * 25.02795 * 7 5 4 37 37 H 1.08998 * 109.47645 * 54.53902 * 10 8 7 38 38 H 1.09000 * 109.47415 * 294.53245 * 10 8 7 39 39 H 1.09000 * 110.77660 * 147.15113 * 12 11 10 40 40 H 1.08992 * 110.94432 * 23.78319 * 12 11 10 41 41 H 1.08992 * 110.73930 * 216.11532 * 13 12 11 42 42 H 1.09005 * 110.89203 * 92.85616 * 13 12 11 43 43 H 1.08001 * 119.95929 * 359.32262 * 15 14 13 44 44 H 1.08007 * 120.05753 * 179.97438 * 16 15 14 45 45 H 1.08011 * 119.86945 * 180.10328 * 17 16 15 46 46 H 1.07996 * 119.90374 * 180.02562 * 18 17 16 47 47 H 1.08997 * 109.49819 * 181.32773 * 20 5 4 48 48 H 1.09011 * 109.49269 * 301.42005 * 20 5 4 49 49 H 1.09003 * 109.58168 * 65.15198 * 21 20 5 50 50 H 1.09004 * 109.58762 * 185.57850 * 21 20 5 51 51 H 0.96998 * 120.00106 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7312 1.2444 5 6 3.5675 -0.8493 1.1691 6 1 4.0059 0.1462 1.0993 7 7 4.0653 -1.5185 2.3734 8 6 5.3292 -1.3048 2.7896 9 8 6.0547 -0.5587 2.1667 10 6 5.8414 -1.9937 4.0281 11 7 7.2717 -1.7025 4.1945 12 6 8.0866 -2.4880 3.2424 13 6 8.4815 -3.7274 4.0781 14 6 8.4155 -3.2089 5.5009 15 6 8.9225 -3.7097 6.6817 16 6 8.7245 -3.0248 7.8668 17 6 8.0183 -1.8357 7.8657 18 6 7.5083 -1.3312 6.6879 19 6 7.7006 -2.0173 5.4898 20 6 3.9570 -1.6654 -0.0656 21 6 3.4650 -0.9452 -1.3250 22 7 2.0225 -0.6980 -1.1954 23 6 1.1538 -1.1099 -2.1704 24 1 0.1357 -1.3640 -1.9143 25 6 1.5815 -1.2010 -3.4878 26 7 0.9090 -1.9351 -4.3488 27 14 3.1113 -0.2817 -4.0387 28 1 4.2857 -1.1878 -3.9679 29 1 2.9311 0.1866 -5.4364 30 1 3.3335 0.8871 -3.1499 31 1 -0.3634 -1.0277 0.0051 32 1 -0.3634 0.5182 0.8875 33 1 -0.3634 0.5094 -0.8925 34 1 1.6032 -1.7273 1.2888 35 1 1.7658 -0.1699 2.1365 36 1 3.4852 -2.1155 2.8714 37 1 5.6987 -3.0699 3.9307 38 1 5.2934 -1.6318 4.8981 39 1 8.9715 -1.9291 2.9380 40 1 7.4972 -2.7796 2.3732 41 1 9.4923 -4.0526 3.8323 42 1 7.7695 -4.5393 3.9296 43 1 9.4709 -4.6401 6.6816 44 1 9.1214 -3.4175 8.7913 45 1 7.8653 -1.3002 8.7912 46 1 6.9580 -0.4019 6.6939 47 1 5.0412 -1.7692 -0.1059 48 1 3.4983 -2.6527 -0.0086 49 1 3.9902 0.0040 -1.4317 50 1 3.6518 -1.5689 -2.1992 51 1 1.2076 -1.9984 -5.2695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948036538.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:36 Heat of formation + Delta-G solvation = 35.399344 kcal Electronic energy + Delta-G solvation = -30145.847940 eV Core-core repulsion = 26238.992242 eV Total energy + Delta-G solvation = -3906.855698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.23463 -39.65230 -37.98360 -36.84963 -34.66856 -32.80237 -32.38903 -31.74383 -30.65924 -29.87997 -29.19687 -27.10758 -26.39948 -24.50833 -23.36557 -22.67101 -21.80493 -21.54512 -20.74560 -20.22829 -19.31621 -17.28422 -17.08352 -16.52879 -16.37373 -16.00758 -15.54108 -15.44135 -15.13894 -14.88603 -14.52542 -14.07252 -13.97083 -13.76815 -13.61347 -13.43281 -13.35128 -13.09868 -12.89209 -12.61269 -12.49644 -12.21624 -11.96556 -11.85629 -11.82114 -11.50291 -11.35892 -11.19957 -11.16920 -11.00089 -10.60737 -10.39218 -10.19887 -10.14897 -9.97235 -9.83425 -9.48364 -9.35147 -9.13802 -8.81432 -8.60021 -8.19361 -6.94283 -5.93098 -3.30666 0.95843 1.05306 2.68807 2.94501 3.35874 3.39956 3.51487 3.54218 3.55561 4.24736 4.41894 4.55427 4.62722 4.64712 4.74704 4.77933 4.86939 4.89988 4.97441 5.09638 5.14003 5.17293 5.27089 5.30154 5.40486 5.41854 5.52694 5.61397 5.62431 5.75950 5.79610 5.97758 6.02341 6.04138 6.09770 6.10218 6.18192 6.20902 6.26117 6.36553 6.39622 6.42299 6.48385 6.54033 6.64134 6.71337 6.80498 6.94766 6.95872 7.04903 7.60971 7.98765 8.32915 8.36213 8.95330 9.74372 10.11945 11.22399 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.002280 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.356635 B =12276.786236 C =12980.774181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.175 3.825 3 H 0.032 0.968 4 C -0.135 4.135 5 C 0.152 3.848 6 H 0.082 0.918 7 N -0.726 5.726 8 C 0.509 3.491 9 O -0.519 6.519 10 C 0.039 3.961 11 N -0.473 5.473 12 C 0.058 3.942 13 C -0.114 4.114 14 C -0.138 4.138 15 C -0.090 4.090 16 C -0.133 4.133 17 C -0.105 4.105 18 C -0.111 4.111 19 C 0.092 3.908 20 C -0.140 4.140 21 C 0.130 3.870 22 N -0.603 5.603 23 C -0.258 4.258 24 H 0.092 0.908 25 C 0.024 3.976 26 N -0.910 5.910 27 Si 0.879 3.121 28 H -0.290 1.290 29 H -0.304 1.304 30 H -0.269 1.269 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.396 0.604 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.125 0.875 47 H 0.056 0.944 48 H 0.064 0.936 49 H 0.027 0.973 50 H 0.073 0.927 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.465 -3.797 24.880 28.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.068 3.932 3 H 0.049 0.951 4 C -0.175 4.175 5 C 0.049 3.951 6 H 0.100 0.900 7 N -0.378 5.378 8 C 0.293 3.707 9 O -0.393 6.393 10 C -0.090 4.090 11 N -0.189 5.189 12 C -0.068 4.068 13 C -0.152 4.152 14 C -0.140 4.140 15 C -0.109 4.109 16 C -0.152 4.152 17 C -0.123 4.123 18 C -0.131 4.131 19 C -0.004 4.004 20 C -0.180 4.180 21 C 0.004 3.996 22 N -0.327 5.327 23 C -0.386 4.386 24 H 0.109 0.891 25 C -0.175 4.175 26 N -0.553 5.553 27 Si 0.710 3.290 28 H -0.217 1.217 29 H -0.232 1.232 30 H -0.193 1.193 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.229 0.771 37 H 0.089 0.911 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.138 0.862 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.143 0.857 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.045 0.955 50 H 0.091 0.909 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.971 -2.723 24.070 27.478 hybrid contribution 0.595 -0.670 -0.075 0.899 sum 13.566 -3.393 23.995 27.772 Atomic orbital electron populations 1.21805 0.94986 1.01948 1.00602 1.20376 0.93738 0.93373 0.85722 0.95061 1.22374 0.93484 1.02025 0.99593 1.20970 0.94407 0.96612 0.83132 0.89966 1.46253 1.13307 1.49009 1.29235 1.20368 0.82151 0.82365 0.85822 1.90729 1.56008 1.36166 1.56405 1.22106 0.88867 0.99682 0.98332 1.59657 1.02369 1.55624 1.01264 1.23140 0.98288 0.91058 0.94336 1.21768 1.03297 0.99100 0.91065 1.21051 1.02172 0.95407 0.95406 1.20411 0.99453 0.99834 0.91157 1.21063 1.00362 0.96030 0.97710 1.20941 0.97730 0.96173 0.97491 1.20550 1.02201 0.99972 0.90353 1.19570 0.98034 0.93014 0.89820 1.22387 0.99926 0.99937 0.95766 1.21296 0.85177 0.97222 0.95888 1.44485 1.01970 1.65753 1.20493 1.18919 0.95691 1.38311 0.85697 0.89088 1.25315 0.97603 0.98757 0.95839 1.69815 1.41349 1.39544 1.04609 0.86985 0.83375 0.81521 0.77125 1.21745 1.23230 1.19346 0.92365 0.94075 0.91549 0.91349 0.92212 0.77105 0.91131 0.87753 0.88880 0.89510 0.89384 0.90019 0.86188 0.85775 0.85554 0.85717 0.92529 0.91711 0.95473 0.90865 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.94 37.16 0.30 -2.10 16 2 C 0.17 3.31 3.50 -67.60 -0.24 3.07 16 3 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 4 C -0.13 -2.06 4.84 -26.61 -0.13 -2.19 16 5 C 0.15 2.41 2.42 -67.89 -0.16 2.24 16 6 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 7 N -0.73 -9.03 5.08 -53.77 -0.27 -9.30 16 8 C 0.51 6.83 7.26 -10.99 -0.08 6.75 16 9 O -0.52 -9.22 15.61 5.55 0.09 -9.13 16 10 C 0.04 0.40 5.23 -4.97 -0.03 0.37 16 11 N -0.47 -5.47 4.60 -170.37 -0.78 -6.26 16 12 C 0.06 0.62 6.34 -2.42 -0.02 0.60 16 13 C -0.11 -0.96 6.92 -26.61 -0.18 -1.14 16 14 C -0.14 -1.30 6.23 -104.04 -0.65 -1.95 16 15 C -0.09 -0.72 10.03 -39.68 -0.40 -1.12 16 16 C -0.13 -0.97 10.06 -39.54 -0.40 -1.37 16 17 C -0.10 -0.79 10.02 -39.68 -0.40 -1.19 16 18 C -0.11 -1.02 10.05 -39.27 -0.39 -1.42 16 19 C 0.09 0.96 5.50 -83.41 -0.46 0.51 16 20 C -0.14 -2.54 5.65 -26.61 -0.15 -2.69 16 21 C 0.13 2.88 4.19 -3.71 -0.02 2.86 16 22 N -0.60 -13.89 2.75 -164.77 -0.45 -14.35 16 23 C -0.26 -6.95 9.04 -15.06 -0.14 -7.08 16 24 H 0.09 2.57 6.39 -52.48 -0.34 2.24 16 25 C 0.02 0.68 5.24 -17.43 -0.09 0.58 16 26 N -0.91 -27.64 13.97 55.49 0.78 -26.86 16 27 Si 0.88 22.60 24.36 -169.99 -4.14 18.46 16 28 H -0.29 -7.28 6.74 56.52 0.38 -6.90 16 29 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 30 H -0.27 -6.82 6.44 56.52 0.36 -6.45 16 31 H 0.06 1.07 7.45 -51.93 -0.39 0.68 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.29 7.62 -51.93 -0.40 0.89 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.40 3.72 8.60 -40.82 -0.35 3.37 16 37 H 0.07 0.60 7.95 -51.93 -0.41 0.19 16 38 H 0.10 0.90 7.96 -51.93 -0.41 0.48 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 0.95 7.30 -51.93 -0.38 0.58 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 45 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 46 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 49 H 0.03 0.62 6.94 -51.93 -0.36 0.26 16 50 H 0.07 1.77 4.68 -51.93 -0.24 1.53 16 51 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 393.38 15.07 5.93 5.93 Total: -1.00 -33.24 393.38 -10.85 -44.09 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -8.36 Total: 2.69 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -3.63 Total: -5.27 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.73 Total: -56.77 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.14 Total: 18.46 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.24 -10.85 -44.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948036538.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.492 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds