Wall clock time and date at job start Wed Apr 1 2020 03:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 110.72793 * 2 1 4 4 C 1.54934 * 110.66557 * 236.90101 * 2 1 3 5 5 C 1.54591 * 102.92522 * 204.15346 * 4 2 1 6 6 C 1.53999 * 105.13937 * 21.95766 * 5 4 2 7 7 N 1.47898 * 107.05621 * 1.22534 * 6 5 4 8 8 C 1.46901 * 111.00423 * 214.15305 * 7 6 5 9 9 C 1.50702 * 109.46970 * 294.27978 * 8 7 6 10 10 O 1.21271 * 120.00000 * 353.79627 * 9 8 7 11 11 N 1.34781 * 119.99506 * 173.79984 * 9 8 7 12 12 C 1.46496 * 119.99507 * 179.97438 * 11 9 8 13 13 H 1.08998 * 110.73175 * 31.59280 * 12 11 9 14 14 C 1.54340 * 110.82365 * 267.96699 * 12 11 9 15 15 C 1.51370 * 105.17363 * 268.12373 * 14 12 11 16 16 C 1.38490 * 130.39582 * 162.80548 * 15 14 12 17 17 C 1.38107 * 120.21931 * 180.02562 * 16 15 14 18 18 C 1.38253 * 119.93013 * 359.97438 * 17 16 15 19 19 C 1.38107 * 119.93660 * 0.02562 * 18 17 16 20 20 C 1.38213 * 109.75601 * 342.81275 * 15 14 12 21 21 C 1.51368 * 109.75968 * 359.97438 * 20 15 14 22 22 H 1.09000 * 110.38475 * 136.15777 * 21 20 15 23 23 N 1.46499 * 110.30308 * 258.26860 * 21 20 15 24 24 C 1.36943 * 120.00067 * 270.74519 * 23 21 20 25 25 H 1.08002 * 119.99621 * 359.97438 * 24 23 21 26 26 C 1.38811 * 120.00144 * 180.02562 * 24 23 21 27 27 N 1.31619 * 119.99760 * 180.02562 * 26 24 23 28 28 Si 1.86799 * 119.99834 * 359.97438 * 26 24 23 29 29 H 1.48507 * 109.46876 * 90.00171 * 28 26 24 30 30 H 1.48503 * 109.46987 * 210.00034 * 28 26 24 31 31 H 1.48490 * 109.47497 * 330.00316 * 28 26 24 32 32 H 1.09007 * 109.46820 * 296.90587 * 1 2 3 33 33 H 1.08997 * 109.46876 * 56.90018 * 1 2 3 34 34 H 1.09001 * 109.47417 * 176.90821 * 1 2 3 35 35 H 1.09005 * 110.72257 * 85.79391 * 4 2 1 36 36 H 1.09005 * 110.87959 * 322.58278 * 4 2 1 37 37 H 1.09006 * 110.31274 * 263.04713 * 5 4 2 38 38 H 1.09003 * 110.31295 * 140.87022 * 5 4 2 39 39 H 1.08998 * 109.92049 * 241.87317 * 6 5 4 40 40 H 1.08995 * 109.91689 * 120.57806 * 6 5 4 41 41 H 1.08995 * 109.47386 * 174.27683 * 8 7 6 42 42 H 1.09010 * 109.46563 * 54.27749 * 8 7 6 43 43 H 0.96995 * 119.99738 * 359.97438 * 11 9 8 44 44 H 1.09002 * 110.30299 * 27.05023 * 14 12 11 45 45 H 1.08998 * 110.30754 * 149.19835 * 14 12 11 46 46 H 1.08007 * 119.89337 * 0.02807 * 16 15 14 47 47 H 1.07995 * 120.03446 * 179.97438 * 17 16 15 48 48 H 1.07999 * 120.03268 * 180.02562 * 18 17 16 49 49 H 1.07994 * 119.88621 * 179.97438 * 19 18 17 50 50 H 0.96995 * 120.00715 * 90.74834 * 23 21 20 51 51 H 0.97003 * 119.99516 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0194 0.0000 4 6 2.0768 -0.7916 -1.2144 5 6 3.4852 -1.2198 -0.7423 6 6 3.4278 -1.1648 0.7956 7 7 2.0543 -0.7589 1.1643 8 6 2.0580 0.0719 2.3758 9 6 2.5226 -0.7524 3.5487 10 8 2.7132 -1.9426 3.4158 11 7 2.7261 -0.1667 4.7454 12 6 3.1772 -0.9681 5.8858 13 1 3.8071 -1.7930 5.5526 14 6 1.9744 -1.4858 6.7026 15 6 1.7399 -0.4384 7.7699 16 6 0.6349 -0.2055 8.5715 17 6 0.6476 0.8253 9.4905 18 6 1.7670 1.6276 9.6117 19 6 2.8700 1.3970 8.8132 20 6 2.8589 0.3639 7.8909 21 6 3.9221 -0.0900 6.9138 22 1 4.3747 0.7694 6.4190 23 7 4.9470 -0.8750 7.6061 24 6 6.0351 -0.2492 8.1538 25 1 6.1378 0.8230 8.0748 26 6 7.0066 -0.9931 8.8093 27 7 8.0520 -0.3916 9.3361 28 14 6.8292 -2.8477 8.9452 29 1 7.4774 -3.4939 7.7757 30 1 7.4810 -3.3171 10.1943 31 1 5.3886 -3.2065 8.9736 32 1 -0.3633 0.4651 0.9165 33 1 -0.3633 0.5612 -0.8609 34 1 -0.3634 -1.0262 -0.0554 35 1 2.1429 -0.1513 -2.0941 36 1 1.4570 -1.6645 -1.4201 37 1 4.2373 -0.5260 -1.1178 38 1 3.7043 -2.2339 -1.0766 39 1 4.1440 -0.4324 1.1680 40 1 3.6485 -2.1482 1.2108 41 1 1.0501 0.4401 2.5670 42 1 2.7328 0.9164 2.2351 43 1 2.5739 0.7853 4.8515 44 1 1.0957 -1.5788 6.0643 45 1 2.2132 -2.4456 7.1607 46 1 -0.2398 -0.8322 8.4777 47 1 -0.2159 1.0044 10.1139 48 1 1.7789 2.4339 10.3301 49 1 3.7437 2.0245 8.9082 50 1 4.8551 -1.8380 7.6767 51 1 8.7311 -0.9115 9.7939 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960303872.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:45 Heat of formation + Delta-G solvation = -6.025972 kcal Electronic energy + Delta-G solvation = -30265.962542 eV Core-core repulsion = 26357.310508 eV Total energy + Delta-G solvation = -3908.652034 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.65688 -40.67604 -39.35230 -37.57370 -35.80013 -34.11695 -33.28620 -32.95537 -32.26752 -31.62605 -29.48107 -27.92589 -27.39017 -26.31599 -24.74786 -23.43182 -22.29749 -21.80183 -21.65927 -21.21705 -20.99077 -19.83662 -18.05217 -17.68561 -17.26851 -17.03004 -16.60629 -16.27247 -16.13324 -15.82443 -15.75236 -15.53403 -15.34268 -14.85520 -14.72939 -14.43192 -14.34872 -14.16979 -14.01592 -13.75974 -13.58831 -13.33354 -13.05779 -12.87468 -12.84166 -12.64117 -12.58852 -12.43156 -12.23252 -12.20441 -12.07428 -12.02728 -11.83217 -11.68820 -11.61058 -11.45806 -11.08582 -10.83117 -10.17906 -9.66597 -9.50408 -9.38726 -9.33892 -8.07255 -5.41689 0.51771 0.56620 1.34378 1.35895 1.42125 1.64871 1.98839 2.43007 2.88972 3.01174 3.24158 3.36220 3.60420 3.64715 3.68968 3.83850 3.95684 4.02429 4.05516 4.14921 4.23282 4.24746 4.29773 4.30641 4.37469 4.45696 4.48718 4.57936 4.64846 4.72493 4.79512 4.80293 4.87528 4.89087 4.93476 4.94868 5.04766 5.11083 5.18373 5.22527 5.28179 5.31060 5.42952 5.47014 5.63025 5.68226 5.70299 5.86535 5.89162 6.02511 6.15299 6.20057 6.58443 6.99153 7.28577 7.72780 7.91292 9.13501 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010258 B = 0.003171 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.914535 B = 8826.726827 C =10713.532753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 H 0.065 0.935 4 C -0.114 4.114 5 C -0.130 4.130 6 C 0.038 3.962 7 N -0.513 5.513 8 C 0.034 3.966 9 C 0.512 3.488 10 O -0.563 6.563 11 N -0.706 5.706 12 C 0.146 3.854 13 H 0.083 0.917 14 C -0.080 4.080 15 C -0.100 4.100 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.128 4.128 19 C -0.109 4.109 20 C -0.117 4.117 21 C 0.210 3.790 22 H 0.063 0.937 23 N -0.735 5.735 24 C -0.225 4.225 25 H 0.064 0.936 26 C -0.054 4.054 27 N -0.977 5.977 28 Si 0.943 3.057 29 H -0.279 1.279 30 H -0.294 1.294 31 H -0.257 1.257 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.035 0.965 40 H 0.057 0.943 41 H 0.129 0.871 42 H 0.082 0.918 43 H 0.413 0.587 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.139 0.861 47 H 0.151 0.849 48 H 0.139 0.861 49 H 0.101 0.899 50 H 0.365 0.635 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.526 4.461 -17.071 27.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.050 4.050 3 H 0.083 0.917 4 C -0.151 4.151 5 C -0.168 4.168 6 C -0.090 4.090 7 N -0.239 5.239 8 C -0.097 4.097 9 C 0.300 3.700 10 O -0.441 6.441 11 N -0.358 5.358 12 C 0.040 3.960 13 H 0.101 0.899 14 C -0.118 4.118 15 C -0.101 4.101 16 C -0.133 4.133 17 C -0.137 4.137 18 C -0.146 4.146 19 C -0.128 4.128 20 C -0.120 4.120 21 C 0.101 3.899 22 H 0.081 0.919 23 N -0.377 5.377 24 C -0.355 4.355 25 H 0.082 0.918 26 C -0.246 4.246 27 N -0.627 5.627 28 Si 0.770 3.230 29 H -0.205 1.205 30 H -0.220 1.220 31 H -0.182 1.182 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.147 0.853 42 H 0.100 0.900 43 H 0.249 0.751 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.157 0.843 47 H 0.169 0.831 48 H 0.157 0.843 49 H 0.119 0.881 50 H 0.198 0.802 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.529 3.315 -17.011 26.866 hybrid contribution 1.414 -0.044 0.817 1.633 sum -19.115 3.271 -16.194 25.265 Atomic orbital electron populations 1.21681 0.92723 1.02253 1.02419 1.22938 0.96795 0.95967 0.89308 0.91686 1.22530 0.95123 1.00298 0.97199 1.22413 0.98471 1.02524 0.93397 1.22799 0.89130 1.00474 0.96592 1.64488 1.19683 1.37323 1.02391 1.22200 1.04487 0.94254 0.88776 1.21077 0.76480 0.88373 0.84114 1.90688 1.51722 1.17268 1.84396 1.45720 1.68508 1.12818 1.08791 1.21493 0.94970 0.93977 0.85597 0.89904 1.21343 0.98517 0.96959 0.95006 1.20618 0.94500 0.96844 0.98113 1.20856 0.97750 0.98735 0.95938 1.21314 0.98804 0.95089 0.98521 1.21287 0.93249 1.00817 0.99256 1.20748 0.98310 0.97753 0.95982 1.21378 0.95905 0.95678 0.99069 1.19904 0.86924 0.93388 0.89656 0.91934 1.42585 1.22513 1.05347 1.67251 1.18943 0.96761 0.92814 1.27019 0.91832 1.25345 0.96737 1.01906 1.00600 1.69849 1.12989 1.36345 1.43561 0.85595 0.78428 0.81764 0.77168 1.20547 1.22045 1.18190 0.92423 0.90389 0.92868 0.89001 0.90995 0.90400 0.91082 0.94625 0.92405 0.85335 0.90038 0.75108 0.89346 0.90208 0.84305 0.83093 0.84328 0.88116 0.80166 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.50 71.98 0.68 -0.91 16 2 C 0.06 0.82 2.92 45.26 0.13 0.96 16 3 H 0.07 0.81 8.02 -2.39 -0.02 0.79 16 4 C -0.11 -1.52 6.50 31.80 0.21 -1.31 16 5 C -0.13 -2.15 6.93 31.47 0.22 -1.93 16 6 C 0.04 0.87 5.65 86.45 0.49 1.36 16 7 N -0.51 -10.71 4.69 -862.79 -4.04 -14.76 16 8 C 0.03 0.63 5.17 85.56 0.44 1.07 16 9 C 0.51 13.66 7.51 87.66 0.66 14.32 16 10 O -0.56 -20.00 14.68 -3.00 -0.04 -20.05 16 11 N -0.71 -17.86 5.11 -438.21 -2.24 -20.10 16 12 C 0.15 4.69 3.03 45.91 0.14 4.82 16 13 H 0.08 3.09 7.48 -2.39 -0.02 3.07 16 14 C -0.08 -2.33 6.48 30.52 0.20 -2.14 16 15 C -0.10 -3.00 6.14 -19.60 -0.12 -3.12 16 16 C -0.11 -2.90 10.04 22.30 0.22 -2.68 16 17 C -0.12 -2.83 10.05 22.24 0.22 -2.60 16 18 C -0.13 -3.52 10.05 22.24 0.22 -3.30 16 19 C -0.11 -3.74 10.04 22.30 0.22 -3.52 16 20 C -0.12 -4.09 5.77 -19.60 -0.11 -4.20 16 21 C 0.21 7.91 3.13 44.92 0.14 8.05 16 22 H 0.06 2.41 8.03 -2.39 -0.02 2.39 16 23 N -0.74 -34.43 4.93 -323.28 -1.60 -36.02 16 24 C -0.22 -12.63 10.44 84.03 0.88 -11.75 16 25 H 0.06 3.87 8.06 -2.91 -0.02 3.84 16 26 C -0.05 -3.17 5.50 84.86 0.47 -2.71 16 27 N -0.98 -62.37 13.97 21.65 0.30 -62.06 16 28 Si 0.94 46.38 27.73 68.60 1.90 48.29 16 29 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 30 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 31 H -0.26 -11.69 6.52 99.48 0.65 -11.04 16 32 H 0.06 0.66 7.35 -2.38 -0.02 0.64 16 33 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.77 8.11 -2.39 -0.02 0.75 16 35 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.07 1.03 8.03 -2.38 -0.02 1.01 16 37 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.04 0.82 7.64 -2.39 -0.02 0.80 16 40 H 0.06 1.69 7.33 -2.39 -0.02 1.68 16 41 H 0.13 1.77 7.30 -2.39 -0.02 1.75 16 42 H 0.08 1.23 7.94 -2.38 -0.02 1.22 16 43 H 0.41 8.29 8.66 -92.71 -0.80 7.48 16 44 H 0.09 2.32 8.09 -2.39 -0.02 2.30 16 45 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 47 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 48 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 49 H 0.10 3.73 8.06 -2.91 -0.02 3.71 16 50 H 0.36 16.91 5.69 -92.71 -0.53 16.38 16 51 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -73.97 405.67 -0.86 -74.83 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: -0.46 Total: 39.46 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 5.31 Total: -9.59 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -7.58 Total: -132.95 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.04 Total: -20.05 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.90 Total: 48.29 kcal Total: -73.97 -0.86 -74.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960303872.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.809 kcal (2) G-P(sol) polarization free energy of solvation -73.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds