Wall clock time and date at job start Wed Apr 1 2020 03:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.44497 * 2 1 4 4 C 1.53037 * 109.46151 * 240.03239 * 2 1 3 5 5 C 1.53188 * 109.31382 * 178.61548 * 4 2 1 6 6 N 1.46930 * 108.77546 * 54.63541 * 5 4 2 7 7 C 1.36928 * 120.63021 * 126.41559 * 6 5 4 8 8 H 1.08007 * 120.00317 * 331.80456 * 7 6 5 9 9 C 1.38819 * 120.00077 * 151.80634 * 7 6 5 10 10 N 1.31616 * 119.99694 * 343.08185 * 9 7 6 11 11 Si 1.86803 * 119.99900 * 163.08524 * 9 7 6 12 12 H 1.48500 * 109.47067 * 59.99925 * 11 9 7 13 13 H 1.48506 * 109.46848 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47080 * 299.99887 * 11 9 7 15 15 C 1.46926 * 118.73652 * 306.39059 * 6 5 4 16 16 C 1.53035 * 109.45870 * 119.96347 * 2 1 3 17 17 H 1.09001 * 109.52802 * 61.41423 * 16 2 1 18 18 N 1.46500 * 109.50060 * 301.33516 * 16 2 1 19 19 C 1.34774 * 120.00366 * 155.16079 * 18 16 2 20 20 O 1.21519 * 120.00198 * 0.02562 * 19 18 16 21 21 C 1.48170 * 120.00564 * 180.02562 * 19 18 16 22 22 C 1.39174 * 119.82569 * 180.02562 * 21 19 18 23 23 C 1.39007 * 119.25018 * 179.97438 * 22 21 19 24 24 C 1.37859 * 118.56159 * 359.82264 * 23 22 21 25 25 C 1.39123 * 119.07177 * 0.25580 * 24 23 22 26 26 N 1.31323 * 121.19777 * 359.81599 * 25 24 23 27 27 C 1.50500 * 122.48775 * 180.29785 * 24 23 22 28 28 C 1.52786 * 110.49229 * 342.42944 * 27 24 23 29 29 C 1.53319 * 108.50833 * 51.05553 * 28 27 24 30 30 C 1.50354 * 118.60788 * 179.72733 * 23 22 21 31 31 H 1.09008 * 109.47353 * 300.03657 * 1 2 3 32 32 H 1.09001 * 109.47117 * 60.03641 * 1 2 3 33 33 H 1.09000 * 109.47203 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.49693 * 58.65974 * 4 2 1 35 35 H 1.09006 * 109.52409 * 298.58519 * 4 2 1 36 36 H 1.09001 * 109.58843 * 294.84522 * 5 4 2 37 37 H 1.08997 * 109.70225 * 174.49389 * 5 4 2 38 38 H 0.96998 * 119.99655 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.58674 * 293.82399 * 15 6 5 40 40 H 1.08999 * 109.58260 * 173.39788 * 15 6 5 41 41 H 0.97003 * 119.99900 * 335.16920 * 18 16 2 42 42 H 1.07998 * 120.37411 * 359.96522 * 22 21 19 43 43 H 1.08001 * 119.40240 * 179.81378 * 25 24 23 44 44 H 1.09003 * 109.30356 * 222.11148 * 27 24 23 45 45 H 1.09001 * 109.29890 * 102.74286 * 27 24 23 46 46 H 1.08994 * 109.63307 * 170.76207 * 28 27 24 47 47 H 1.09004 * 109.62801 * 291.35126 * 28 27 24 48 48 H 1.08991 * 109.64258 * 49.83189 * 29 28 27 49 49 H 1.09003 * 109.63659 * 170.46074 * 29 28 27 50 50 H 1.09006 * 109.29898 * 282.97247 * 30 23 22 51 51 H 1.08992 * 109.31039 * 42.57163 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2642 6 7 4.0678 -1.2488 0.0001 7 6 4.9764 -2.2733 0.0001 8 1 5.0042 -2.9705 -0.8243 9 6 5.8617 -2.4159 1.0598 10 7 6.0661 -1.4121 1.8861 11 14 6.7628 -4.0325 1.3130 12 1 7.5865 -4.3330 0.1144 13 1 7.6422 -3.9276 2.5050 14 1 5.7756 -5.1222 1.5211 15 6 3.5713 -0.6885 1.2643 16 6 2.0398 -0.7207 1.2501 17 1 1.6977 -1.7556 1.2390 18 7 1.5256 -0.0486 2.4459 19 6 1.4001 -0.7312 3.6012 20 8 1.7140 -1.9041 3.6512 21 6 0.8795 -0.0516 4.8106 22 6 0.7520 -0.7599 6.0018 23 6 0.2628 -0.1104 7.1292 24 6 -0.0772 1.2217 7.0269 25 6 0.0750 1.8662 5.8034 26 7 0.5381 1.2297 4.7522 27 6 -0.6087 2.0121 8.1922 28 6 -1.1086 1.0751 9.2906 29 6 -0.0061 0.0554 9.5995 30 6 0.1251 -0.8910 8.4069 31 1 -0.3634 0.5144 0.8897 32 1 -0.3633 0.5133 -0.8903 33 1 -0.3633 -1.0277 0.0005 34 1 1.6572 -0.2207 -2.1399 35 1 1.6978 -1.7557 -1.2388 36 1 3.9143 0.3409 -1.3673 37 1 3.9437 -1.2830 -2.0985 38 1 6.6844 -1.5118 2.6268 39 1 3.9142 0.3410 1.3674 40 1 3.9417 -1.2844 2.0985 41 1 1.2753 0.8878 2.4062 42 1 1.0299 -1.8024 6.0497 43 1 -0.1926 2.9089 5.7165 44 1 -1.4312 2.6427 7.8546 45 1 0.1851 2.6437 8.5911 46 1 -1.3366 1.6510 10.1875 47 1 -2.0034 0.5547 8.9488 48 1 0.9385 0.5747 9.7608 49 1 -0.2721 -0.5130 10.4908 50 1 -0.7611 -1.5231 8.3491 51 1 1.0065 -1.5176 8.5431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967289744.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:35 Heat of formation + Delta-G solvation = -24.044727 kcal Electronic energy + Delta-G solvation = -30492.657106 eV Core-core repulsion = 26583.223720 eV Total energy + Delta-G solvation = -3909.433386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.99536 -40.77779 -39.18220 -37.71263 -36.14363 -34.74035 -33.85817 -32.88270 -32.29624 -30.88755 -30.09102 -28.99658 -26.12541 -25.54989 -24.93339 -23.77741 -23.63223 -22.69665 -21.89819 -21.16392 -20.25856 -18.87114 -18.71527 -17.85881 -16.96039 -16.78896 -16.50136 -16.37783 -16.06802 -15.65540 -15.58047 -15.29828 -15.18390 -14.97605 -14.76186 -14.60416 -14.40611 -14.13069 -14.03931 -13.66730 -13.50854 -13.31862 -13.26271 -13.08633 -12.99412 -12.72704 -12.60522 -12.38082 -12.21833 -11.94287 -11.89397 -11.76507 -11.66780 -11.61673 -11.44997 -11.24320 -11.17576 -10.57624 -10.50421 -10.46671 -10.19298 -9.87051 -8.71839 -7.91196 -5.37824 -0.41605 0.17125 1.38501 1.45027 1.49664 1.67109 2.05556 2.47363 2.78526 3.09970 3.25455 3.52938 3.62004 3.73368 3.78235 3.81281 3.85341 3.97097 4.03531 4.04492 4.14759 4.33055 4.40875 4.44490 4.53275 4.56771 4.62361 4.63995 4.71430 4.72769 4.77271 4.89789 4.91550 4.95362 5.02130 5.04052 5.09986 5.14900 5.18471 5.22472 5.24289 5.26531 5.36876 5.40477 5.42045 5.45757 5.50329 5.59058 5.65655 5.73738 6.32577 6.43609 6.79194 7.08104 7.18497 7.81781 8.32165 9.13679 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012477 B = 0.003012 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.550089 B = 9294.988126 C =10933.794294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.077 0.923 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.608 5.608 7 C -0.266 4.266 8 H 0.070 0.930 9 C -0.052 4.052 10 N -0.932 5.932 11 Si 0.964 3.036 12 H -0.265 1.265 13 H -0.294 1.294 14 H -0.284 1.284 15 C 0.182 3.818 16 C 0.138 3.862 17 H 0.052 0.948 18 N -0.686 5.686 19 C 0.559 3.441 20 O -0.578 6.578 21 C 0.053 3.947 22 C -0.124 4.124 23 C -0.046 4.046 24 C -0.100 4.100 25 C 0.098 3.902 26 N -0.472 5.472 27 C -0.078 4.078 28 C -0.119 4.119 29 C -0.119 4.119 30 C -0.086 4.086 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.021 0.979 37 H 0.059 0.941 38 H 0.247 0.753 39 H -0.004 1.004 40 H 0.042 0.958 41 H 0.415 0.585 42 H 0.131 0.869 43 H 0.198 0.802 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.852 10.685 13.319 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.095 0.905 4 C -0.153 4.153 5 C 0.010 3.990 6 N -0.332 5.332 7 C -0.396 4.396 8 H 0.088 0.912 9 C -0.248 4.248 10 N -0.577 5.577 11 Si 0.792 3.208 12 H -0.190 1.190 13 H -0.220 1.220 14 H -0.211 1.211 15 C 0.054 3.946 16 C 0.032 3.968 17 H 0.070 0.930 18 N -0.336 5.336 19 C 0.345 3.655 20 O -0.458 6.458 21 C -0.082 4.082 22 C -0.146 4.146 23 C -0.054 4.054 24 C -0.102 4.102 25 C -0.064 4.064 26 N -0.184 5.184 27 C -0.115 4.115 28 C -0.157 4.157 29 C -0.156 4.156 30 C -0.123 4.123 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.014 0.986 40 H 0.061 0.939 41 H 0.252 0.748 42 H 0.149 0.851 43 H 0.214 0.786 44 H 0.122 0.878 45 H 0.114 0.886 46 H 0.110 0.890 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.105 0.895 50 H 0.111 0.889 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.380 10.252 12.580 25.277 hybrid contribution 1.122 -1.238 0.789 1.848 sum -18.258 9.015 13.369 24.359 Atomic orbital electron populations 1.21760 0.93034 1.01658 1.02679 1.21270 0.96937 0.99324 0.92879 0.90472 1.21965 0.95712 1.00281 0.97387 1.21195 0.93557 0.96236 0.87983 1.44228 1.48176 1.39893 1.00911 1.19484 1.09384 1.03895 1.06818 0.91217 1.25855 0.98640 1.00418 0.99877 1.70181 1.38224 1.30912 1.18425 0.85383 0.78011 0.79970 0.77421 1.19022 1.21999 1.21094 1.20740 0.89543 0.94829 0.89461 1.21614 0.95036 0.95894 0.84272 0.92959 1.45740 1.63581 1.15119 1.09170 1.18429 0.77636 0.85744 0.83735 1.90774 1.52086 1.17851 1.85080 1.20772 1.02215 0.91671 0.93577 1.22180 0.98327 1.01588 0.92482 1.20188 0.95294 0.94369 0.95525 1.21204 0.97438 0.93718 0.97849 1.23503 0.94529 1.01347 0.87055 1.67434 1.10060 1.07470 1.33427 1.20589 1.01930 0.97267 0.91682 1.21599 0.97966 0.97225 0.98878 1.21606 0.99857 0.97319 0.96821 1.20600 1.03507 0.97861 0.90349 0.92506 0.90007 0.93711 0.88287 0.92952 0.96099 0.92285 0.94453 0.98597 0.93924 0.74773 0.85107 0.78563 0.87801 0.88596 0.88958 0.91543 0.91676 0.89467 0.88938 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 9.02 71.98 0.65 -2.81 16 2 C -0.08 -2.80 2.27 -10.77 -0.02 -2.82 16 3 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 4 C -0.11 -3.80 5.36 30.67 0.16 -3.64 16 5 C 0.14 5.73 6.52 86.36 0.56 6.30 16 6 N -0.61 -32.90 2.99 -699.09 -2.09 -34.99 16 7 C -0.27 -15.75 9.58 84.04 0.81 -14.94 16 8 H 0.07 3.97 7.89 -2.91 -0.02 3.95 16 9 C -0.05 -3.19 4.92 84.86 0.42 -2.77 16 10 N -0.93 -60.00 11.20 21.65 0.24 -59.76 16 11 Si 0.96 48.91 29.59 68.60 2.03 50.94 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 14 H -0.28 -14.37 7.11 99.48 0.71 -13.66 16 15 C 0.18 9.76 4.88 86.36 0.42 10.18 16 16 C 0.14 5.91 2.06 45.07 0.09 6.01 16 17 H 0.05 2.57 7.58 -2.39 -0.02 2.55 16 18 N -0.69 -26.45 4.36 -444.73 -1.94 -28.39 16 19 C 0.56 23.50 7.78 86.88 0.68 24.18 16 20 O -0.58 -29.44 15.99 -3.77 -0.06 -29.50 16 21 C 0.05 1.79 6.75 41.87 0.28 2.07 16 22 C -0.12 -3.76 9.26 22.68 0.21 -3.55 16 23 C -0.05 -1.00 5.74 -19.88 -0.11 -1.12 16 24 C -0.10 -1.75 5.75 -19.80 -0.11 -1.86 16 25 C 0.10 1.93 10.79 84.98 0.92 2.85 16 26 N -0.47 -13.36 9.55 -184.69 -1.76 -15.12 16 27 C -0.08 -0.69 5.71 29.71 0.17 -0.52 16 28 C -0.12 -0.93 5.97 30.63 0.18 -0.74 16 29 C -0.12 -1.22 5.98 30.64 0.18 -1.04 16 30 C -0.09 -1.35 5.71 29.68 0.17 -1.18 16 31 H 0.06 1.41 7.36 -2.38 -0.02 1.39 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 35 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 2.42 7.93 -2.39 -0.02 2.41 16 38 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 40 H 0.04 2.73 6.06 -2.39 -0.01 2.71 16 41 H 0.41 13.68 7.64 -92.71 -0.71 12.97 16 42 H 0.13 4.23 7.64 -2.91 -0.02 4.21 16 43 H 0.20 2.27 8.06 -2.91 -0.02 2.24 16 44 H 0.10 0.53 8.13 -2.39 -0.02 0.51 16 45 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.07 0.56 8.10 -2.39 -0.02 0.54 16 48 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 49 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 51 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -80.88 399.53 2.28 -78.60 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.21 Total: 23.61 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 5.65 Total: 14.60 kcal Atomic # 7 Polarization: -132.70 SS G_CDS: -5.55 Total: -138.26 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.06 Total: -29.50 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.03 Total: 50.94 kcal Total: -80.88 2.28 -78.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967289744.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.555 kcal (2) G-P(sol) polarization free energy of solvation -80.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds