Wall clock time and date at job start Wed Apr 1 2020 03:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.45146 * 2 1 4 4 C 1.53036 * 109.45840 * 240.03079 * 2 1 3 5 5 C 1.53195 * 109.31260 * 178.61509 * 4 2 1 6 6 N 1.46924 * 108.77507 * 54.63697 * 5 4 2 7 7 C 1.36933 * 120.63516 * 126.41465 * 6 5 4 8 8 H 1.08009 * 119.99786 * 332.61192 * 7 6 5 9 9 C 1.38816 * 120.00585 * 152.61304 * 7 6 5 10 10 N 1.31614 * 119.99881 * 159.34449 * 9 7 6 11 11 Si 1.86802 * 119.99612 * 339.34638 * 9 7 6 12 12 H 1.48499 * 109.47252 * 92.93224 * 11 9 7 13 13 H 1.48497 * 109.46759 * 212.93423 * 11 9 7 14 14 H 1.48504 * 109.46932 * 332.92880 * 11 9 7 15 15 C 1.46999 * 118.75559 * 306.39397 * 6 5 4 16 16 C 1.53047 * 109.45784 * 119.96443 * 2 1 3 17 17 H 1.08995 * 109.49587 * 301.37054 * 16 2 1 18 18 N 1.46500 * 109.49523 * 61.43338 * 16 2 1 19 19 C 1.34774 * 119.99532 * 204.93403 * 18 16 2 20 20 O 1.21508 * 120.00503 * 359.97438 * 19 18 16 21 21 C 1.48177 * 119.99743 * 180.02562 * 19 18 16 22 22 C 1.39177 * 119.81969 * 180.02562 * 21 19 18 23 23 C 1.38999 * 119.24812 * 180.31286 * 22 21 19 24 24 C 1.37872 * 118.55881 * 359.21687 * 23 22 21 25 25 C 1.39121 * 119.06558 * 0.85358 * 24 23 22 26 26 N 1.31317 * 121.20660 * 359.55044 * 25 24 23 27 27 C 1.50495 * 122.48865 * 180.73683 * 24 23 22 28 28 C 1.52792 * 110.48752 * 342.48962 * 27 24 23 29 29 C 1.53311 * 108.52044 * 51.10761 * 28 27 24 30 30 C 1.50351 * 118.62344 * 179.78621 * 23 22 21 31 31 H 1.08995 * 109.46798 * 300.03792 * 1 2 3 32 32 H 1.08996 * 109.46540 * 60.03234 * 1 2 3 33 33 H 1.08998 * 109.47151 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.50063 * 298.56799 * 4 2 1 35 35 H 1.09000 * 109.49756 * 58.67180 * 4 2 1 36 36 H 1.08996 * 109.58885 * 174.42043 * 5 4 2 37 37 H 1.09004 * 109.59175 * 294.71043 * 5 4 2 38 38 H 0.97009 * 119.99511 * 180.02562 * 10 9 7 39 39 H 1.09005 * 109.58066 * 293.82458 * 15 6 5 40 40 H 1.09004 * 109.63137 * 173.37796 * 15 6 5 41 41 H 0.97003 * 119.99899 * 24.93479 * 18 16 2 42 42 H 1.08001 * 120.37079 * 0.03327 * 22 21 19 43 43 H 1.08005 * 119.39518 * 179.56919 * 25 24 23 44 44 H 1.08999 * 109.29810 * 102.79616 * 27 24 23 45 45 H 1.08996 * 109.30162 * 222.38416 * 27 24 23 46 46 H 1.08995 * 109.62597 * 170.82042 * 28 27 24 47 47 H 1.08998 * 109.62563 * 291.20270 * 28 27 24 48 48 H 1.08997 * 109.63610 * 49.88025 * 29 28 27 49 49 H 1.08998 * 109.63794 * 170.50277 * 29 28 27 50 50 H 1.08997 * 109.47155 * 41.84427 * 30 23 22 51 51 H 1.09001 * 109.07327 * 282.48822 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5714 -0.6887 -1.2642 6 7 4.0679 -1.2489 0.0000 7 6 4.9764 -2.2734 0.0001 8 1 5.0129 -2.9629 -0.8304 9 6 5.8505 -2.4260 1.0677 10 7 6.4270 -3.5890 1.2851 11 14 6.2083 -0.9806 2.1956 12 1 5.2795 -1.0147 3.3538 13 1 7.6089 -1.0670 2.6816 14 1 6.0212 0.2888 1.4481 15 6 3.5714 -0.6886 1.2651 16 6 2.0399 -0.7208 1.2502 17 1 1.6567 -0.2210 2.1398 18 7 1.5801 -2.1116 1.2343 19 6 1.4527 -2.7924 2.3905 20 8 1.7197 -2.2528 3.4460 21 6 0.9882 -4.1994 2.3745 22 6 0.8576 -4.8987 3.5707 23 6 0.4271 -6.2201 3.5413 24 6 0.1276 -6.7888 2.3216 25 6 0.2829 -6.0301 1.1658 26 7 0.6993 -4.7859 1.2195 27 6 -0.3609 -8.2060 2.1886 28 6 -0.0583 -8.9975 3.4600 29 6 -0.5800 -8.2037 4.6635 30 6 0.2956 -6.9638 4.8414 31 1 -0.3633 0.5144 0.8896 32 1 -0.3632 0.5133 -0.8903 33 1 -0.3633 -1.0276 0.0005 34 1 1.6978 -1.7556 -1.2382 35 1 1.6573 -0.2207 -2.1398 36 1 3.9417 -1.2846 -2.0983 37 1 3.9144 0.3406 -1.3698 38 1 7.0376 -3.6957 2.0313 39 1 3.9143 0.3409 1.3683 40 1 3.9412 -1.2845 2.0996 41 1 1.3673 -2.5425 0.3917 42 1 1.0923 -4.4215 4.5107 43 1 0.0566 -6.4726 0.2069 44 1 -1.4369 -8.2013 2.0146 45 1 0.1385 -8.6815 1.3445 46 1 -0.5570 -9.9657 3.4160 47 1 1.0178 -9.1438 3.5528 48 1 -1.6115 -7.9010 4.4833 49 1 -0.5274 -8.8211 5.5602 50 1 -0.1528 -6.3106 5.5899 51 1 1.2862 -7.2678 5.1796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967289745.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:39 Heat of formation + Delta-G solvation = 4.553792 kcal Electronic energy + Delta-G solvation = -31358.323182 eV Core-core repulsion = 27450.129921 eV Total energy + Delta-G solvation = -3908.193261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.81413 -39.51254 -37.75127 -36.70976 -34.24160 -32.97994 -32.76097 -31.36698 -31.24623 -29.87000 -29.18417 -27.50789 -24.68874 -24.01054 -23.77595 -22.79361 -22.60417 -21.19939 -21.10166 -19.50007 -18.77440 -17.70378 -16.82490 -16.44405 -15.71020 -15.43916 -15.17548 -15.05966 -14.83126 -14.44185 -14.26390 -14.10691 -13.82850 -13.68900 -13.45194 -13.32419 -13.21359 -13.10020 -12.79576 -12.60592 -12.30051 -12.14132 -12.07167 -11.94528 -11.59057 -11.41279 -11.17186 -11.15582 -11.08080 -10.77514 -10.55132 -10.47906 -10.20995 -9.93349 -9.79369 -9.72747 -9.39348 -9.36207 -9.21816 -8.86163 -8.64947 -8.30779 -6.88125 -5.87537 -3.22389 0.82444 1.29696 3.08790 3.45681 3.55081 3.57040 3.58230 4.11094 4.32995 4.44516 4.47461 4.62307 4.63669 4.76919 4.82722 5.00677 5.04523 5.10263 5.17782 5.19297 5.25987 5.26884 5.29038 5.46544 5.50639 5.55466 5.59622 5.69815 5.74950 5.80434 5.81496 5.81549 5.88532 5.92202 6.03604 6.04515 6.07096 6.14420 6.16762 6.27779 6.30915 6.37880 6.45311 6.57369 6.67109 6.70438 6.74628 6.89214 7.09605 7.83147 8.02759 8.16967 8.39530 8.72517 9.00643 9.80224 10.16963 11.28328 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011786 B = 0.003786 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.174521 B = 7393.363929 C = 8384.705944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.132 4.132 5 C 0.147 3.853 6 N -0.601 5.601 7 C -0.256 4.256 8 H 0.084 0.916 9 C 0.027 3.973 10 N -0.908 5.908 11 Si 0.875 3.125 12 H -0.284 1.284 13 H -0.304 1.304 14 H -0.271 1.271 15 C 0.113 3.887 16 C 0.132 3.868 17 H 0.081 0.919 18 N -0.676 5.676 19 C 0.571 3.429 20 O -0.546 6.546 21 C 0.088 3.912 22 C -0.113 4.113 23 C -0.043 4.043 24 C -0.116 4.116 25 C 0.102 3.898 26 N -0.453 5.453 27 C -0.077 4.077 28 C -0.122 4.122 29 C -0.118 4.118 30 C -0.084 4.084 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.033 0.967 40 H 0.080 0.920 41 H 0.409 0.591 42 H 0.145 0.855 43 H 0.159 0.841 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.066 0.934 49 H 0.070 0.930 50 H 0.080 0.920 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.128 -6.209 1.540 19.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.097 0.903 4 C -0.171 4.171 5 C 0.021 3.979 6 N -0.324 5.324 7 C -0.384 4.384 8 H 0.101 0.899 9 C -0.172 4.172 10 N -0.551 5.551 11 Si 0.705 3.295 12 H -0.212 1.212 13 H -0.233 1.233 14 H -0.196 1.196 15 C -0.013 4.013 16 C 0.025 3.975 17 H 0.099 0.901 18 N -0.326 5.326 19 C 0.356 3.644 20 O -0.424 6.424 21 C -0.049 4.049 22 C -0.134 4.134 23 C -0.051 4.051 24 C -0.118 4.118 25 C -0.060 4.060 26 N -0.164 5.164 27 C -0.114 4.114 28 C -0.160 4.160 29 C -0.156 4.156 30 C -0.121 4.121 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.098 0.902 41 H 0.247 0.753 42 H 0.163 0.837 43 H 0.176 0.824 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.088 0.912 50 H 0.099 0.901 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.671 -5.361 1.588 18.535 hybrid contribution 0.321 0.068 1.037 1.088 sum -17.350 -5.293 2.625 18.329 Atomic orbital electron populations 1.21840 0.95509 1.01771 1.01073 1.21305 0.95118 0.99693 0.95118 0.90261 1.22095 0.98788 1.00127 0.96117 1.20945 0.90956 0.96583 0.89457 1.44299 1.48716 1.40318 0.99095 1.18835 1.09487 1.02726 1.07354 0.89882 1.25223 0.97409 0.96527 0.98013 1.69840 1.32688 1.21985 1.30539 0.87047 0.76295 0.84964 0.81195 1.21164 1.23256 1.19576 1.21800 0.91182 0.97476 0.90878 1.21563 0.96820 0.81283 0.97792 0.90130 1.45624 1.64875 1.13206 1.08929 1.17758 0.77869 0.84425 0.84394 1.90737 1.51595 1.68962 1.31082 1.21141 0.99094 0.95287 0.89364 1.22091 0.97634 0.93867 0.99782 1.19809 0.96538 0.93507 0.95257 1.20692 1.00202 0.97442 0.93500 1.22775 0.95695 0.89496 0.97985 1.67495 1.09136 1.11632 1.28133 1.20410 1.01232 0.90704 0.99066 1.21576 1.01884 0.98290 0.94207 1.21559 0.99381 0.96102 0.98552 1.20489 1.01378 0.96584 0.93626 0.93064 0.92880 0.92689 0.92001 0.92270 0.91854 0.95955 0.92966 0.94959 0.90155 0.75328 0.83722 0.82425 0.90251 0.90131 0.91228 0.91314 0.91542 0.91165 0.90111 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.05 37.16 0.34 -1.50 16 2 C -0.09 -1.42 2.48 -90.58 -0.22 -1.65 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 4 C -0.13 -2.06 5.20 -26.61 -0.14 -2.20 16 5 C 0.15 2.83 6.52 -3.71 -0.02 2.81 16 6 N -0.60 -14.37 2.69 -172.25 -0.46 -14.84 16 7 C -0.26 -7.28 10.03 -15.06 -0.15 -7.43 16 8 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 9 C 0.03 0.82 5.23 -17.43 -0.09 0.72 16 10 N -0.91 -28.83 13.97 55.49 0.78 -28.05 16 11 Si 0.87 23.68 24.34 -169.99 -4.14 19.54 16 12 H -0.28 -7.79 6.62 56.52 0.37 -7.42 16 13 H -0.30 -8.32 7.11 56.52 0.40 -7.91 16 14 H -0.27 -7.08 6.64 56.52 0.38 -6.70 16 15 C 0.11 2.62 3.80 -3.67 -0.01 2.60 16 16 C 0.13 2.50 2.24 -67.81 -0.15 2.35 16 17 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 18 N -0.68 -13.07 4.24 -54.53 -0.23 -13.31 16 19 C 0.57 11.85 7.78 -12.18 -0.09 11.75 16 20 O -0.55 -12.62 15.99 5.36 0.09 -12.54 16 21 C 0.09 1.61 6.75 -83.05 -0.56 1.05 16 22 C -0.11 -1.81 9.26 -38.95 -0.36 -2.17 16 23 C -0.04 -0.56 5.74 -104.64 -0.60 -1.16 16 24 C -0.12 -1.39 5.75 -104.53 -0.60 -1.99 16 25 C 0.10 1.37 10.79 -17.44 -0.19 1.19 16 26 N -0.45 -7.65 9.55 -9.73 -0.09 -7.74 16 27 C -0.08 -0.64 5.71 -28.09 -0.16 -0.80 16 28 C -0.12 -0.93 5.96 -26.68 -0.16 -1.09 16 29 C -0.12 -0.90 5.98 -26.66 -0.16 -1.06 16 30 C -0.08 -0.82 5.72 -28.14 -0.16 -0.98 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.72 7.54 -51.93 -0.39 0.33 16 34 H 0.06 1.01 6.40 -51.93 -0.33 0.68 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 39 H 0.03 0.73 7.08 -51.93 -0.37 0.37 16 40 H 0.08 2.16 4.50 -51.93 -0.23 1.93 16 41 H 0.41 7.59 5.97 -40.82 -0.24 7.35 16 42 H 0.15 2.28 7.64 -52.49 -0.40 1.88 16 43 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.61 8.13 -51.93 -0.42 0.18 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 48 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 389.95 15.07 5.88 5.88 Total: -1.00 -34.59 389.95 -9.99 -44.58 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -8.30 Total: 6.05 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -3.50 Total: 0.42 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -0.01 Total: -63.94 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -4.14 Total: 19.54 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.59 -9.99 -44.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967289745.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.138 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds