Wall clock time and date at job start Wed Apr 1 2020 03:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.45146 * 2 1 4 4 C 1.53036 * 109.45840 * 240.03079 * 2 1 3 5 5 C 1.53195 * 109.31260 * 178.61509 * 4 2 1 6 6 N 1.46924 * 108.77507 * 54.63697 * 5 4 2 7 7 C 1.36933 * 120.63516 * 126.41465 * 6 5 4 8 8 H 1.08009 * 119.99786 * 332.61192 * 7 6 5 9 9 C 1.38816 * 120.00585 * 152.61304 * 7 6 5 10 10 N 1.31614 * 119.99881 * 159.34449 * 9 7 6 11 11 Si 1.86802 * 119.99612 * 339.34638 * 9 7 6 12 12 H 1.48499 * 109.47252 * 92.93224 * 11 9 7 13 13 H 1.48497 * 109.46759 * 212.93423 * 11 9 7 14 14 H 1.48504 * 109.46932 * 332.92880 * 11 9 7 15 15 C 1.46999 * 118.75559 * 306.39397 * 6 5 4 16 16 C 1.53047 * 109.45784 * 119.96443 * 2 1 3 17 17 H 1.08995 * 109.49587 * 301.37054 * 16 2 1 18 18 N 1.46500 * 109.49523 * 61.43338 * 16 2 1 19 19 C 1.34774 * 119.99532 * 204.93403 * 18 16 2 20 20 O 1.21508 * 120.00503 * 359.97438 * 19 18 16 21 21 C 1.48177 * 119.99743 * 180.02562 * 19 18 16 22 22 C 1.39177 * 119.81969 * 180.02562 * 21 19 18 23 23 C 1.38999 * 119.24812 * 180.31286 * 22 21 19 24 24 C 1.37872 * 118.55881 * 359.21687 * 23 22 21 25 25 C 1.39121 * 119.06558 * 0.85358 * 24 23 22 26 26 N 1.31317 * 121.20660 * 359.55044 * 25 24 23 27 27 C 1.50495 * 122.48865 * 180.73683 * 24 23 22 28 28 C 1.52792 * 110.48752 * 342.48962 * 27 24 23 29 29 C 1.53311 * 108.52044 * 51.10761 * 28 27 24 30 30 C 1.50351 * 118.62344 * 179.78621 * 23 22 21 31 31 H 1.08995 * 109.46798 * 300.03792 * 1 2 3 32 32 H 1.08996 * 109.46540 * 60.03234 * 1 2 3 33 33 H 1.08998 * 109.47151 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.50063 * 298.56799 * 4 2 1 35 35 H 1.09000 * 109.49756 * 58.67180 * 4 2 1 36 36 H 1.08996 * 109.58885 * 174.42043 * 5 4 2 37 37 H 1.09004 * 109.59175 * 294.71043 * 5 4 2 38 38 H 0.97009 * 119.99511 * 180.02562 * 10 9 7 39 39 H 1.09005 * 109.58066 * 293.82458 * 15 6 5 40 40 H 1.09004 * 109.63137 * 173.37796 * 15 6 5 41 41 H 0.97003 * 119.99899 * 24.93479 * 18 16 2 42 42 H 1.08001 * 120.37079 * 0.03327 * 22 21 19 43 43 H 1.08005 * 119.39518 * 179.56919 * 25 24 23 44 44 H 1.08999 * 109.29810 * 102.79616 * 27 24 23 45 45 H 1.08996 * 109.30162 * 222.38416 * 27 24 23 46 46 H 1.08995 * 109.62597 * 170.82042 * 28 27 24 47 47 H 1.08998 * 109.62563 * 291.20270 * 28 27 24 48 48 H 1.08997 * 109.63610 * 49.88025 * 29 28 27 49 49 H 1.08998 * 109.63794 * 170.50277 * 29 28 27 50 50 H 1.08997 * 109.47155 * 41.84427 * 30 23 22 51 51 H 1.09001 * 109.07327 * 282.48822 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5714 -0.6887 -1.2642 6 7 4.0679 -1.2489 0.0000 7 6 4.9764 -2.2734 0.0001 8 1 5.0129 -2.9629 -0.8304 9 6 5.8505 -2.4260 1.0677 10 7 6.4270 -3.5890 1.2851 11 14 6.2083 -0.9806 2.1956 12 1 5.2795 -1.0147 3.3538 13 1 7.6089 -1.0670 2.6816 14 1 6.0212 0.2888 1.4481 15 6 3.5714 -0.6886 1.2651 16 6 2.0399 -0.7208 1.2502 17 1 1.6567 -0.2210 2.1398 18 7 1.5801 -2.1116 1.2343 19 6 1.4527 -2.7924 2.3905 20 8 1.7197 -2.2528 3.4460 21 6 0.9882 -4.1994 2.3745 22 6 0.8576 -4.8987 3.5707 23 6 0.4271 -6.2201 3.5413 24 6 0.1276 -6.7888 2.3216 25 6 0.2829 -6.0301 1.1658 26 7 0.6993 -4.7859 1.2195 27 6 -0.3609 -8.2060 2.1886 28 6 -0.0583 -8.9975 3.4600 29 6 -0.5800 -8.2037 4.6635 30 6 0.2956 -6.9638 4.8414 31 1 -0.3633 0.5144 0.8896 32 1 -0.3632 0.5133 -0.8903 33 1 -0.3633 -1.0276 0.0005 34 1 1.6978 -1.7556 -1.2382 35 1 1.6573 -0.2207 -2.1398 36 1 3.9417 -1.2846 -2.0983 37 1 3.9144 0.3406 -1.3698 38 1 7.0376 -3.6957 2.0313 39 1 3.9143 0.3409 1.3683 40 1 3.9412 -1.2845 2.0996 41 1 1.3673 -2.5425 0.3917 42 1 1.0923 -4.4215 4.5107 43 1 0.0566 -6.4726 0.2069 44 1 -1.4369 -8.2013 2.0146 45 1 0.1385 -8.6815 1.3445 46 1 -0.5570 -9.9657 3.4160 47 1 1.0178 -9.1438 3.5528 48 1 -1.6115 -7.9010 4.4833 49 1 -0.5274 -8.8211 5.5602 50 1 -0.1528 -6.3106 5.5899 51 1 1.2862 -7.2678 5.1796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967289745.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:38 Heat of formation + Delta-G solvation = -18.017914 kcal Electronic energy + Delta-G solvation = -31359.301965 eV Core-core repulsion = 27450.129921 eV Total energy + Delta-G solvation = -3909.172044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.99802 -40.94818 -39.25415 -37.70203 -36.06604 -34.43877 -33.84972 -33.32922 -32.33119 -31.21035 -30.33813 -29.11422 -25.99180 -25.49123 -24.94149 -24.13018 -23.69271 -22.85152 -22.31433 -20.50059 -20.39839 -18.97734 -18.78843 -17.69962 -17.30661 -16.74678 -16.58894 -16.32363 -16.23537 -15.80368 -15.62503 -15.17523 -15.16018 -15.07085 -14.86565 -14.76356 -14.57638 -14.34617 -14.01919 -13.85024 -13.67169 -13.56534 -13.26897 -13.19066 -12.99773 -12.91615 -12.55529 -12.43998 -12.22442 -11.88744 -11.85142 -11.77218 -11.71456 -11.50274 -11.41113 -11.26869 -11.16415 -10.78308 -10.49112 -10.44631 -10.14636 -9.83924 -8.90044 -8.20974 -5.48903 -0.39127 0.18942 1.26347 1.28909 1.37896 1.67537 2.15487 2.37306 2.81293 3.01002 3.15983 3.33691 3.54748 3.62704 3.72697 3.81073 3.86551 3.91201 4.00122 4.03240 4.05698 4.30458 4.32975 4.41382 4.47514 4.56586 4.59824 4.61416 4.62887 4.68288 4.72649 4.78071 4.83562 4.86428 4.91178 4.99606 5.00974 5.04854 5.09695 5.17339 5.18791 5.21493 5.25847 5.36898 5.39702 5.45641 5.48773 5.56552 5.67172 5.84695 6.08850 6.44413 6.81285 6.89246 7.17637 7.60693 8.01534 8.98768 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011786 B = 0.003786 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.174521 B = 7393.363929 C = 8384.705944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.096 0.904 4 C -0.121 4.121 5 C 0.139 3.861 6 N -0.611 5.611 7 C -0.231 4.231 8 H 0.056 0.944 9 C -0.031 4.031 10 N -0.955 5.955 11 Si 0.932 3.068 12 H -0.298 1.298 13 H -0.309 1.309 14 H -0.252 1.252 15 C 0.111 3.889 16 C 0.133 3.867 17 H 0.079 0.921 18 N -0.671 5.671 19 C 0.560 3.440 20 O -0.584 6.584 21 C 0.049 3.951 22 C -0.126 4.126 23 C -0.047 4.047 24 C -0.102 4.102 25 C 0.093 3.907 26 N -0.474 5.474 27 C -0.076 4.076 28 C -0.122 4.122 29 C -0.114 4.114 30 C -0.086 4.086 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.041 0.959 38 H 0.256 0.744 39 H 0.042 0.958 40 H 0.036 0.964 41 H 0.412 0.588 42 H 0.134 0.866 43 H 0.192 0.808 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.056 0.944 48 H 0.073 0.927 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.089 -6.504 0.216 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.114 0.886 4 C -0.160 4.160 5 C 0.015 3.985 6 N -0.336 5.336 7 C -0.361 4.361 8 H 0.074 0.926 9 C -0.225 4.225 10 N -0.601 5.601 11 Si 0.763 3.237 12 H -0.227 1.227 13 H -0.238 1.238 14 H -0.176 1.176 15 C -0.015 4.015 16 C 0.027 3.973 17 H 0.097 0.903 18 N -0.320 5.320 19 C 0.346 3.654 20 O -0.465 6.465 21 C -0.086 4.086 22 C -0.148 4.148 23 C -0.055 4.055 24 C -0.104 4.104 25 C -0.069 4.069 26 N -0.185 5.185 27 C -0.113 4.113 28 C -0.160 4.160 29 C -0.151 4.151 30 C -0.123 4.123 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.251 0.749 42 H 0.152 0.848 43 H 0.209 0.791 44 H 0.122 0.878 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.075 0.925 48 H 0.092 0.908 49 H 0.106 0.894 50 H 0.105 0.895 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.670 -5.605 0.219 21.417 hybrid contribution 1.159 0.045 1.374 1.798 sum -19.511 -5.560 1.593 20.350 Atomic orbital electron populations 1.21759 0.93083 1.01798 1.02678 1.21317 0.97000 0.99668 0.92478 0.88577 1.21996 0.95636 1.00283 0.98046 1.21213 0.93550 0.96936 0.86820 1.44401 1.48144 1.39807 1.01225 1.18796 1.09010 1.02734 1.05546 0.92643 1.25757 0.98414 0.98279 1.00076 1.69957 1.34600 1.23763 1.31822 0.86117 0.75098 0.83181 0.79325 1.22686 1.23829 1.17571 1.21744 0.94118 0.96679 0.88945 1.21553 0.93846 0.81709 1.00183 0.90318 1.45631 1.64281 1.13382 1.08740 1.18305 0.77271 0.85607 0.84179 1.90686 1.53421 1.70136 1.32243 1.20911 1.02206 0.94616 0.90826 1.22186 0.98396 0.95446 0.98736 1.20207 0.95540 0.92370 0.97382 1.21194 0.97663 0.99147 0.92394 1.23448 0.94767 0.88562 1.00090 1.67420 1.10130 1.13405 1.27584 1.20577 1.02641 0.87943 1.00175 1.21616 1.01493 0.99308 0.93572 1.21576 0.99009 0.94968 0.99555 1.20600 1.02056 0.97615 0.91984 0.92720 0.90023 0.93484 0.93008 0.88166 0.92348 0.94132 0.93459 0.94071 0.94547 0.74941 0.84786 0.79132 0.87785 0.88671 0.88672 0.92498 0.90797 0.89363 0.89491 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.05 71.98 0.65 -2.37 16 2 C -0.09 -2.38 2.48 -10.76 -0.03 -2.41 16 3 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 4 C -0.12 -3.41 5.20 30.67 0.16 -3.26 16 5 C 0.14 5.11 6.52 86.36 0.56 5.67 16 6 N -0.61 -29.29 2.69 -698.89 -1.88 -31.17 16 7 C -0.23 -13.53 10.03 84.04 0.84 -12.69 16 8 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 9 C -0.03 -1.91 5.23 84.86 0.44 -1.46 16 10 N -0.95 -63.47 13.97 21.65 0.30 -63.17 16 11 Si 0.93 51.09 24.34 68.60 1.67 52.76 16 12 H -0.30 -16.90 6.62 99.48 0.66 -16.24 16 13 H -0.31 -16.99 7.11 99.48 0.71 -16.28 16 14 H -0.25 -12.79 6.64 99.48 0.66 -12.13 16 15 C 0.11 5.18 3.80 86.35 0.33 5.51 16 16 C 0.13 5.04 2.24 45.07 0.10 5.14 16 17 H 0.08 3.01 7.58 -2.39 -0.02 2.99 16 18 N -0.67 -26.61 4.24 -444.72 -1.89 -28.49 16 19 C 0.56 24.59 7.78 86.89 0.68 25.26 16 20 O -0.58 -28.86 15.99 -3.74 -0.06 -28.92 16 21 C 0.05 1.91 6.75 41.88 0.28 2.20 16 22 C -0.13 -4.30 9.26 22.68 0.21 -4.09 16 23 C -0.05 -1.22 5.74 -19.88 -0.11 -1.34 16 24 C -0.10 -2.28 5.75 -19.80 -0.11 -2.40 16 25 C 0.09 2.41 10.79 84.98 0.92 3.33 16 26 N -0.47 -16.31 9.55 -184.69 -1.76 -18.07 16 27 C -0.08 -1.01 5.71 29.71 0.17 -0.84 16 28 C -0.12 -1.45 5.96 30.63 0.18 -1.27 16 29 C -0.11 -1.40 5.98 30.64 0.18 -1.22 16 30 C -0.09 -1.59 5.72 29.68 0.17 -1.42 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 1.13 7.54 -2.39 -0.02 1.11 16 34 H 0.05 1.59 6.40 -2.39 -0.02 1.58 16 35 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 37 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.26 16.45 8.31 -92.70 -0.77 15.68 16 39 H 0.04 1.84 7.08 -2.38 -0.02 1.82 16 40 H 0.04 2.03 4.50 -2.38 -0.01 2.02 16 41 H 0.41 15.55 5.97 -92.71 -0.55 14.99 16 42 H 0.13 4.66 7.64 -2.91 -0.02 4.63 16 43 H 0.19 3.46 8.06 -2.91 -0.02 3.44 16 44 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.09 1.06 8.13 -2.39 -0.02 1.04 16 46 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 48 H 0.07 0.83 8.10 -2.39 -0.02 0.81 16 49 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -81.19 389.95 2.29 -78.90 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.28 Total: 25.80 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 5.63 Total: 12.36 kcal Atomic # 7 Polarization: -135.67 SS G_CDS: -5.23 Total: -140.90 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.06 Total: -28.92 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 1.67 Total: 52.76 kcal Total: -81.19 2.29 -78.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967289745.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.879 kcal (2) G-P(sol) polarization free energy of solvation -81.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds